RNA id: XM_021577025.2


Basic Information

Item Value
RNA id XM_021577025.2
length 3646
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110499962
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20364847 ~ 20392819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCGTCATTTGGGTCCGCCTACCAGCTCTTCCAGCAGGAGCTTCACCACGCCCCTTTTCCATGAAGAGCTTCGGCTGTGCTCTGGTTGGTTGTTTCGAACAGTGTATGCACGTTTGGAGAGAGGGTTAACTGACAACTAATGACAGAGAACTCAACCTTTTGGGAACTTTCAAAGAAAACTATACGAGAGACGGAACAGGATGAAAAGGTGAATCTCCTCTGATTGCAGCGATGGCAGTGCAGGCTGGCATACAGatGTGGTTCGGGGAGAAGTTTGACACGCCCCTGCAGAGTCCACGCAGCCCATTGACCCTGCGCCATGGGCCGGGCTTGGCCGATGTCTTCCAGTATGACCAGTGGCTGGCCGTGCGCCACGAAGCCACACTGGTACCCATGCAGGAGGACCTGGCCATCTGGCTCACCGGGATGCTGGgagaggaggtgagagcgGAGAGCTTCATGGCGGAGCTGAACAACGGTGTGAAGCTGTGTCGGCTAATTGGAGCTCTGCAGAGCAGGATCTCTCAGAGCAGGGCCTCGGATATGGGCAAGTTGTTTCCCATGAAGAAGGTGGCATGTAAGTGCAATGCCTCTCCAGGGTCCTTTTTCGCCCGCGACAACACTGCCAACTTCCTGGGCTGGTGTCGCCACATAGGCGTGGAGGAGACGTACCTGTTTGAGTCGGAGGGCCTGGttcTGCACAAGGATCCCCGGcaggtgtgtctgtgtctgctagAGATCGGCCGCATCGTCTCCAAGTATGGTGTGGAGCCTCCGGTGCTGGTGAAACTGGAGAAGGAGATTGAGCTGGAGGAGACCCTGCTGAAGACGACAGAGCCTGCTACTGCAGTCAAAACCTTCACTGTGTGCTGTCAGCATGGAGGCCTCTACCAGCCTGGGGAGCAACATCTGACGGACGAGCCTCCGTGTAACTGCTCCCAGAGAGTATCTATTGAATACCTGTCAGAGGGCCGTTACAGACTGGGAGACAAGACCCTCTTCATCCGGATGCTGCATGGGAAGCATGTGATGGTGCGTGTGGGGGGTGGCTGGGACACCCTAAGGGGTTTCCTGCTCAAGTACGACCCCGGCCGGGTGCTCCAGTTCACCACTCTGGAGCAGAAGATCCTGGCATACCAGAAGGGTCCACTGGTCCACGGCTCTGCAGCAGCAGCCCCTCCACCTGACATGGACCCTCTCGCTGCAGTCAACCTCATCCCCTCGTCTTCCTCCTCGTCTTCCTCTGGTTCGGCCTCCAAAGCCACCTGCACCCCCGTCTCGACCCCTACTCTGCCCAGGAAAGTAGCCGCAGCACCCAAAAAGATCCTGCAGATGCCCTTTCCTTCCCCCAAGAAGCCCACCCAGAAGCCCTTGCCAATCCCCAAGAAGGTGGCTGCTGTGTCGCCCACCCTGTCTTCGCAGCAGGGCCCAAGCCCTTCCATTCACAGTGGCAAGAGCCAGCAGACGGCACCACTGCTCCATTCCTCTTCTTCCCCAGCTGTGGCTCCTTCTGCCCCCAAGCTGAAGCTCAGGCCGTCCCCTCGCGGCGCCCTCTCCCAGCCTCGTAGCCCTGTGTGCCCCGAGCCCTCCTGTAAATTTCCTAAACCCTCCTCCACTCCATCCACCCACACCTCCATCACAGTGCCACGCCCCGCCACAGCCCCACCGAGGGTCCCCTTCCAGAAAGAGGGCAGACCCCCAACCGGTGCCACTCAACGCCGCCTGTCTCAGAGGCGGCCCGCCTCCCCGGCCTCGCGCCTTCGTCCGGATGCTGCCAGACGGGTCCGTCCAACCCCCCGTGTGACTGTGCAAACACCCAGGCCGGCAACGGCCCAACCCACCAggacactaacccctaaccccaggACTGCCACAACAGCCCTGCCCAAATCCACCATCTCGCTCCCCAAGAGCAAAGACACCACAGGCAAAAGCCAGGCCCAAACCAGGGCCATCCCCAAAGTGGTTGTGCCTCTACGTGGCGGCACCACTGGGCGGTTACATGGGGTCCCTAGTGGCTCTACCGCTGTTGGCAAGCCAAACCAGAGAACGGTACGGAGGCAAGCGCCCTCTGCCATCATCCCCTCTCTCAAACCGCTGCCCACCAAAACggccccccaaaataccagcccCAACATCAAAGCCCTCCCTTCCCAAAAGAACACTGCTCTCACGAAGAAGACCCAACTCAAGAACAAAAGCGAGGACCCTTATTTTGAAATGAACGGCAGAAGGCATCAGAAGACGTAGTTGGGCGACGTAGTAACGTGACGGGGAAGGACTGTACTGTCCTACTGAACATTAGTGCTTCCATCACGGTATTTGTCTGAATAAGTCCCCAACCAGGATTCAGCAGAACACCAATGTCCACACAAATGTATACCCAACCGGGTATAGATGCAGCAACTGTCAAGACACAAGCTAGTGTTTCACTTTCAAAACGCCATTTGCACCGCTACCATTTTTACATTTGTTTCTCAGTtggtcagattttttttaatctTACTTACTTTCTCATTTAATTGTCCTGTTGTCAAAAGTTCATGCTTCAAATAGCATCTGACAATAAGTCAGTTTTTATGCTGTCTTTGAATGGGTTGAGAAGTGAGTGATACTGATTTTATCTGAGGTCAGCTCAATTCAGTCTTAAGCCTAACACCGAAACACTCAATGGTTGTAAACCAACATCCCATCAACAGACTTTTGTTTTCTTATCCTTTTTCTATCATTTTGAGTGCTTTTGAAAGCTTTCTAACATCTATTCGTATGTCTTGAGGTTCTCTACAGAGGGCTCCATCTTTGTCCATCTGATCTGATAGATATTTTTCTCTGCATATAAAAGTTATACTTTTTAAACATTGGCATTTTCTTTTCAGAAAGGGTCATTTCTGTGCAAAGCAGAGCTAACTAAGGCAGCAcactttgaaaatgttaattattCATTACAAAGCAGGTCATTGTAACCAACTGTTTGACAGGAAATATAACTGGACTGAATGTTTGTCCTCGGTGTGGATAAGCTTTTCATTGATGGAGGTTTGATTGAATATAGACATTTGTTTTTCTTTCTCAGactggatgatgatgatgatggtggggtGTTTTCCATTTTAGAGGTCAAATTAAGCACTGTTGAAATGTTTCTCGTGTGCCTTTAGAAATGACTGTTGCTGAGTGGCGTTAGAATGTACTAGAAACTAgggttttaatattttttttacaaatgagaATTGCACAAAGTACAAGCGCTCGGACCACgtttctttattttgtatttttttattacatGGTCAAATCTCAAATGAATTACTACTGATAATATGCCTGTTACACGCCCTTTGAACTCGTAGAGGCGATGGCAACTAAGGGACAAGCAAAGCCATTAATCATTTTCCAGAGGCGGAAGTTATCGTGAGGTAGATTTTAATTTGTTTTGTCATCTGAGTCTTTTCATTGATCGTGTTTTTACTTTTCTATGTGGTTTTCATGTCTAAGTTACTTTGTCTGTTTTCTTGGTCAGCACTTTATGAAAACCTCTTGGTGCGTTTGTCACTTTGGATGTTGATTCTGTTGATTtgtgttgtctgatctacctttGTTACATTGTCCAATAAAAGGCCAAACGTTGGCAGACTTCCTGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1965022 lncRNA upstream 27227 20337098 ~ 20337621 (+) True G1715009
TU1965023 lncRNA upstream 30227 20334293 ~ 20334621 (+) True G1715010
TU1964945 lncRNA upstream 182652 20181834 ~ 20182196 (+) True G1714940
TU1964924 lncRNA upstream 246053 20118523 ~ 20118795 (+) True G1714922
TU1964875 lncRNA upstream 288815 20075820 ~ 20076033 (+) True G1714887
TU1965057 lncRNA downstream 7986 20400799 ~ 20401003 (+) True G1715039
TU1965058 lncRNA downstream 8776 20401589 ~ 20401806 (+) True G1715040
TU1964855 lncRNA downstream 65317 20458130 ~ 20458523 (+) True G1714871
TU1965069 lncRNA downstream 74265 20467078 ~ 20467371 (+) True G1715051
TU1965071 lncRNA downstream 76395 20469208 ~ 20469540 (+) True G1715053
XM_036957211.1 mRNA upstream 69852 20267697 ~ 20294996 (+) False LOC110499958
XM_021577019.2 mRNA upstream 69852 20283536 ~ 20294996 (+) True LOC110499958
XM_036957210.1 mRNA upstream 109683 20220449 ~ 20255165 (+) False LOC110499957
XM_021577027.2 mRNA downstream 10876 20403689 ~ 20414330 (+) True LOC110499963
XM_036956486.1 mRNA downstream 24674 20417487 ~ 20421625 (+) False med21
XM_036956487.1 mRNA downstream 25789 20418602 ~ 20421625 (+) False med21
XM_036956488.1 mRNA downstream 25800 20418613 ~ 20421625 (+) False med21
NM_001165050.2 mRNA downstream 26325 20419138 ~ 20421148 (+) True med21
TU1964921 other upstream 250957 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 740934 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 740934 19617394 ~ 19623914 (+) False G1714090
TU1963834 other upstream 777028 19580122 ~ 19587820 (+) False G1714090
TU1963821 other upstream 865625 19498128 ~ 19499223 (+) False G1714090
TU1965448 other downstream 165609 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 605785 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 1783150 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 2326106 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 2389672 22782485 ~ 22784445 (+) True G1717516

Expression Profile