RNA id: TCONS_00050559


Basic Information

Item Value
RNA id TCONS_00050559
length 3537
RNA type mRNA
GC content 0.33
exon number 4
gene id XLOC_025687
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 47245764 ~ 47258444 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ataaaatatcaCTGTTAGCTTTTTTCattgcacattttttttccttctcataTTTGATTGCACGTTTTCCCTCACCCACATAATTTCTTGAGCATGCATTATTGGCTTTACCCATCACTTGTGAGACAGCACTAACAGGTACAGTTTTGTTTCCAGATACTGAAAGTGGtctgacgtttttttttttttttttctcacttgcACCGTCCGCCCACCCAAGGGCTTTATGAGTGATGGTTATCTCTCAGTCTCATTGTGCAGTGGGTCTTTTCACACTACTTTGGATGTGCAGTTGTCATTTCTGAATTGGCCAAAGACGCTGTGCATATGGCTTCAGGTAACGTGTCGTATCCTTCAGTTTTTGTGGTTGACGGACACATGAGACCCCCTCCTCTACCCCCCAAGCCGGCCAGTAGACATCGGAAGGAAGCCATCCAGACTTTGCTGTTCATCCTGGTGACTTTGGCTCTGTTTGGCATGGCTGTGGAAGCCTGCTTCATCTACCGTCTGTACTCAGTCAAAGAAACTATTATCCGGACAGATGAATCACACACTGCCATGAGCAAACAAGACAAAGTTGTTGCAGAACCTAAAAAAAATCGTCTTGGAGAAATGAAGCCATCAAAACCAATGGGACAGCTGACAACTGGTTTGCGTGTAAATAATGAAGTTGTGCTGTGGCATGAGAATCATGACTCCATCCTTCACTTCATCAAACACAAATCACAGGAGGGAAAACTCATCATAGAGAAGGAGGGATTCTATTCTGTCTACTCTAAGATCAACTACAAGGAGGAGAGCATCTTATTCACCCACTCTGTAGTCAGAAATACACAGCGATTCGCAGGCGAAGAGATTCTGCTTTTGCAATCCTCCAGCTTACATCCAAAAATCCCAAGACCAAGCATCGAAAACAGCTTTCTCAATGGCGTGTTTCACCTTTACAAAGACGATGCGATTTTTGTCAGGGTAAAAAACTGCACAATTGTGTTGTCCAACTCTGCTGAAAACTACTTTGGGTTGTTTATGATTTAACTGAATTCTGAAGTCTGCCTTTTATCATATGACATTTAATAGCTTTGACGGGAAATTACATAATAGAAGGAGCAATATTTAGCTTTCCTTTGAGCCTGTCCTCAGATGTAAAACTTCTTTTGGACAAACATCTTTTTCTTTTAGAGCCACTAGCCTATGGAATAATTTTACAACAGAACAGATCACATGCACAGACTACAGAATGTTTTCAAGCCTGACCAGGAGGTAGTTTTTATGGAGGCAGATTAGtctaacacaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttacaaaatgaaattcacacgtccacaacacaattcacatttacaaaattaaatttgtaaatttgtaaacacaATTTGTGAGTTtacaagtaaaaatcataaatattttcggcaaatgaattggatttgcatatttatgaattgtgtgttGAGTTTATGAATTTGATCTGTGAATTCTCGAATCatgttttgtatttataaattggatttgtgtgtttatggaGCGTGATTTGAATTTAcgaaatggatttgtgtattttcaaatcatgttttgaattgacgaattggatttgtgtttataaatcgtgttttgaatttacaaaatggttttgtgtgtttatgaagcttgttttgaatttacaaattggttttgtgtatttttaaatcatgtttgaatttacaaattggactGGTGTgtttataaatcgtgttttgaattatgaattagatttgtgtgtttataaagcgtgttttaaatttatgaattgagGCGGcgcagttgcgcagtaggtagtgctgtcgcctcaaagcaagaaggtcgctggttcgagcctcggatgggtcagttggcgtttctgtaaggagtttgcatgttctctctgtgttcgagtgggtttcctccaggtgctccggtttccctcacaagacatgtggtacaggtgaattgggtaagctaaaaaaattgtctgtagtatatgtgtgtgtgaataagagtgcatgggtgtttcccagtgatgggttacagttgtaagggcatccgctatgtaaaacatgtgctcattccgctgtggtgacgccagattaataatgaatgaacaaatgaatttacattttttttcaatgtaatagGATACTAATAGGATGTTCATGCTGAACATTATTCTAATGGTATGaaaaatgcaaaagtaactcacgTAAGTAACATAATGTATTACTTTCCATATaatgtaactaagtaatgcaactagttacttttttggggagtaactcaatattgtaatgtgttactttcaattaaataaaaataaataaattcaataaattttTGCATCTAAAAATAAACTAGACACTGAACGAATGATGAAATGAATAGCGCATTTAGGTGGACAAACCTTTCTCAATATTTTGTGACGAGAGAGTTTCTTGTACAGGATCACAGGATGGATGTTTTTATTCCTAAACATAAAACTAACAAATtatgagagtaaaaaaaaacaaaaaaaacagcctgatctcacgaggacgcataactattttacgttttgtaagtttagcggctaattcgtacgagttcagccatacgaaaatgtatgattttaaaaaggagacgtggcatCCAACCCCACTCCTAAACCTTACCATCATTGgaagatgagcaaatcgtactaaactgtacaaaagagattgtacgaattagcaactaaatcaaaGTTCCGAAttactgtgagattgtgttgaaaaaaacttaaaaactttatttgttttgcaCTTAGCAGCTTCTGCTCTTTAGATCCTTGTTAAAGGATCACTATTTCAAAATAAAGCAACTGAAGTTGTAATTTTTATAGGATTTTAGTTCAGTAAATGTAATATTGGTAACTTGTGTGCATTGAATGTATAAGGGTTAGGgtaataattattgtaataaacaaaTCTATTTTCGACTAGAAATGTACAATTTATATGCTATGTGTTTtggttattcatttaattttcaatGGTGAAATCATCTAATTATGTAACTAGtgtttaaataaattcaataaatgttataaaaagaACATGAgctttttattacactttaaattTGTTCAAAATACTGCTGCATATTTTAATATTGCAGTTCCTTTTGTATGTATCTTTGCATGTCATATTTTTGTATTCTTTTCAGATACGTggttacaaatattttattaaattaagtattgattatatttttaatacactttTTGTCTGAAAACtgttttctaataaaataaataaatttatttcacTCTGCttcaaaatttttgttttttgtttgcaattatttaatGTTGTAGTAAATTTtagtggaaacacacacacacacacacacacacacacacacacacacacatacacacacacacatatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04061 Viral protein interaction with cytokine and cytokine receptor
ko05168 Herpes simplex virus 1 infection
ko04052 Cytokines and growth factors
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-101109-3 Predicted to enable tumor necrosis factor receptor binding activity. Predicted to act upstream of or within immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gill; heart; liver; and pleuroperitoneal region. Orthologous to human TNFSF14 (TNF superfamily member 14).

Ensembl:

ensembl_id ENSDART00000193581

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052370 lncRNA upstream 47152 47175094 ~ 47198612 (+) True XLOC_025686
TCONS_00052771 lncRNA upstream 136291 47107770 ~ 47109473 (+) True XLOC_025685
TCONS_00052769 lncRNA upstream 407126 46834857 ~ 46838638 (+) False XLOC_025684
TCONS_00052770 lncRNA upstream 407126 46837552 ~ 46838638 (+) True XLOC_025684
TCONS_00052768 lncRNA upstream 442717 46798512 ~ 46803047 (+) True XLOC_025683
TCONS_00052371 lncRNA downstream 137091 47395535 ~ 47399494 (+) False XLOC_025689
TCONS_00052772 lncRNA downstream 137091 47395535 ~ 47399913 (+) False XLOC_025689
TCONS_00052774 lncRNA downstream 137130 47395574 ~ 47409399 (+) False XLOC_025689
TCONS_00052773 lncRNA downstream 137130 47395574 ~ 47409399 (+) False XLOC_025689
TCONS_00052775 lncRNA downstream 137438 47395882 ~ 47409399 (+) False XLOC_025689
TCONS_00050557 mRNA upstream 32649 47130912 ~ 47213115 (+) False XLOC_025686
TCONS_00050558 mRNA upstream 33156 47131112 ~ 47212608 (+) False XLOC_025686
TCONS_00050556 mRNA upstream 40036 47130912 ~ 47205728 (+) False XLOC_025686
TCONS_00050552 mRNA upstream 449981 46763745 ~ 46795783 (+) False XLOC_025682
TCONS_00050555 mRNA upstream 449981 46764300 ~ 46795783 (+) True XLOC_025682
TCONS_00050560 mRNA downstream 64050 47322494 ~ 47387377 (+) True XLOC_025688
TCONS_00050562 mRNA downstream 293909 47552353 ~ 47554777 (+) True XLOC_025692
TCONS_00050563 mRNA downstream 948025 48206469 ~ 48215187 (+) True XLOC_025694
TCONS_00050564 mRNA downstream 962969 48221413 ~ 48229972 (+) True XLOC_025695
TCONS_00050565 mRNA downstream 976001 48234445 ~ 48327160 (+) False XLOC_025696
TCONS_00050528 other upstream 1610578 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050515 other upstream 2357611 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050507 other upstream 3528849 43716827 ~ 43716915 (+) True XLOC_025656
TCONS_00050506 other upstream 3530981 43714699 ~ 43714783 (+) True XLOC_025655
TCONS_00050499 other upstream 3861586 43373895 ~ 43384178 (+) False XLOC_025650
TCONS_00050561 other downstream 202044 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050573 other downstream 1873897 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050578 other downstream 2811151 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050613 other downstream 5361614 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050620 other downstream 5570468 52828912 ~ 52829006 (+) True XLOC_025751

Expression Profile

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