RNA id: XM_036956487.1



Basic Information


Item Value
RNA id XM_036956487.1
length 1212
RNA type mRNA
GC content 0.46
exon number 5
gene id med21
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20417487 ~ 20421625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGATACTAGCTAGCGAATCAACaaaattagctagctacagtagctagttaAATGCTACGGAAATCAGGTGAATCGGTCACTGAAAATACAAGCAAACAAAATCTGCAAGAGTCTCATGTTGAAACATTTAGTCTGCCCGGAAATCCAATTTAGGAGAAGTAGGAGAAACAACAAAGATGGCGGACAGGCTAACGCAACTTCAAGATGCAGTCAATTCGCTTGCTGATCAGTTTTGCAATGCAATCGGGGTGCTGCAGCAGTGTGCGCCGCCAGCTTCGTTCGGCAACATACAGACAGCAATCAACAAGGACCAGCCATCGAACCCCACTGAGGAGTATGCCCAACTATTTGCTGCACTCATTGCCCGGACAGCTAAGGATGTGGACGTGCTGATTGACTCACTGCCTAGTGAGGAGTCCACGGCAGCTCTACAGGCGGCCAGTCTGCGGCAGTTGGAGGAGGAGAATCATGATGCAGCGGCACGTCTCGAAGAGGTGGTATACCGAGGGGACTTGCTACTGGAGAAGATCCAAAGCGCCCTGGCTGATATTGCTCAGTCACAACTTCGTACTCGCAGTGGAGGGCCCAGCCAGACCACACCGCCTGACTCATGACCCCCACACATGGGGCAAAGACATTCTCACATCACTTTCTCACATAAATACACCAGAGGGCGCAAATGTGTACAGGAAATCAAATAAAGAACCCGCTGGGTGGACCTGAACGGCTGACCTCTCAAGGATGTAAATCTATGGAAAATACTTCTTGCAATATGTGAGTGGGACATTGGGAAGTTGGTGCTTGGGGAATTCAGTGAGGCAAGCCATTAACCCACATGTTTCTTTACACAAGGACCTTGAGTTCTTCCAGCAAGGAACTGTTTACTCTGTCCTTTTCTTAGCACACTCTATTTTGGATTAAAAAGCACTGCTCCGGTGTCAACATCTGCTGTCAATTTCTTAACCCTGGTTATTTTGAGGATGCTAGTTATGGGTCTGCTGAGTGCTGTTGGTAGCCATTTTTGTACATACTGAAAGCAGCTGGTGAAAGGAACAACAATCCTAAATTGATAGAAGACCATGCTGCACACCAACAAATACTACCCCTTTACAAGCAAGCCCTGTTGTTTTAGAAAGTCAGgttttgtattattttataccAATGTTTTTGTCAACAGTTTATTTCAAGGCATAAATGGCATTTTAAAATGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1965058 lncRNA upstream 16796 20401589 ~ 20401806 (+) True G1715040
TU1965057 lncRNA upstream 17599 20400799 ~ 20401003 (+) True G1715039
TU1965038 lncRNA upstream 25783 20391274 ~ 20392819 (+) True LOC110499962
TU1965022 lncRNA upstream 80981 20337098 ~ 20337621 (+) True G1715009
TU1965023 lncRNA upstream 83981 20334293 ~ 20334621 (+) True G1715010
TU1964855 lncRNA downstream 36505 20458130 ~ 20458523 (+) True G1714871
TU1965069 lncRNA downstream 45453 20467078 ~ 20467371 (+) True G1715051
TU1965071 lncRNA downstream 47583 20469208 ~ 20469540 (+) True G1715053
TU1965085 lncRNA downstream 118605 20540230 ~ 20540450 (+) True G1715066
TU1965439 lncRNA downstream 125240 20546865 ~ 20547140 (+) True G1715383
XM_021577027.2 mRNA upstream 4272 20403689 ~ 20414330 (+) True LOC110499963
XM_036957213.1 mRNA upstream 25789 20364847 ~ 20392813 (+) False LOC110499962
XM_021577025.2 mRNA upstream 25789 20364848 ~ 20392813 (+) False LOC110499962
XM_021577026.2 mRNA upstream 25789 20375596 ~ 20392813 (+) False LOC110499962
XM_021577019.2 mRNA upstream 123606 20283536 ~ 20294996 (+) True LOC110499958
XM_021577053.2 mRNA downstream 1711 20423336 ~ 20432065 (+) False LOC110499971
XM_036957215.1 mRNA downstream 2881 20424506 ~ 20432065 (+) True LOC110499971
XM_036957216.1 mRNA downstream 18227 20439852 ~ 20456984 (+) False LOC110499965
XM_036957217.1 mRNA downstream 18227 20439852 ~ 20456984 (+) False LOC110499965
XM_021577040.2 mRNA downstream 18234 20439859 ~ 20456984 (+) False LOC110499965
TU1964921 other upstream 304711 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 794688 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 794688 19617394 ~ 19623914 (+) False G1714090
TU1963834 other upstream 830782 19580122 ~ 19587820 (+) False G1714090
TU1963821 other upstream 919379 19498128 ~ 19499223 (+) False G1714090
TU1965448 other downstream 136797 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 576973 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 1754338 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 2297294 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 2360860 22782485 ~ 22784445 (+) True G1717516

Expression Profile