RNA id: XM_036957217.1


Basic Information

Item Value
RNA id XM_036957217.1
length 3882
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC110499965
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20439852 ~ 20456984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATATAGGAGGAGACAGATTGACCTCTTCCGCGTTTTCCTGGAGTTGTGTCCTCATTACCCAGGAGGCTACTTTATCCTTGCACGTGTAGGTCTACGTTTTTATGTCTACCCCCCTCCCCGCCTtagtacagagagaggaggaaaaaatAAAGTACGTTTACAATCCCCCGCCTCTTCTACAGTAGGCTATTTCTACCACATTTAGGCTACACTACCACTTCCTCATGTTCTGCGGCGCCGGGCTGCTGCTGACCGGCTCCAGCCATGTCCAAAGAGAATTTTGCCGCCGGCGGCAATGACGGGACCGCAGACAAACGAACAGGACCCTTGCAGTTAGGAGAAACCAATAGCCTTCCTGTTTCTCGGCCTGACGTCATAACGCCCCACCTGGCAGGAGCCATGCCTGATGTCATAACCCCCCACCTGGCAGGAGCCATGCCAATTCAAGAGCTGTCTAGGAAACGGAAGGGGGATCTAGATAACAGGGAAAATGGTGATGCTCAAATAGAGGAGGAACAGAGCAGATCGGAAGATGATGATCAACAGGTGAAAATAAAATGCTTCAGGGAGCCACACAGCCAAATTGAAAAGCGGCGGAGGGACAAAATGAACACCCTTATCGACGAGCTGTCAGCCATGATCCCCTCCTGTAACCCCATGGCCAGAAAGCTTGACAAACTCACTGTGCTGCGAATGGCTGTGCAGCACCTCAAAGCCCTGAAAGGTGCTAGCAGTTCCTTTACTGACGTTAACTACAAACGCAAGCCTTCGTTTCTGCCTCAGGATGATCTCAAGCACCTGGTGCTCACGGCTGCAGATGGGTTCCTGTTCGTGGTGAGTTGTGACAGGGGGAAGATCCTCTTTACCTCAGAATCCATCTTGAAGTTCCTCAACTACAGTCGGTTGGAACTAATTGGACAGAGTCTTTTTGATTATGTCCACCCGAAGGACATTAGTAAAGTGAAAGAGCAGCTGTCAGCCTCAGGATTATACCCTCGCGAACGGCTCATAGATGCCAAAACAGGGTTACAGGTGCAGGACCTTCCTGTGGGAGCAGTTCAACTGTGTACAGGGGCACGGCGCTCCTTCTTCTGCCGCATGAAGCACAGCAGAACAGTTATGAAGACAGAAGACAAAACCATCCAGCCCAGCAGCTCCAAGGAAAAGGAGTCTCAACGATACTGCACTGTCCATTGCACTGGTTACATGCGGAGTTGGCCTTCCACCCAGCTGGATGCTGAGAGTGACGATAACGAGTTCTCCCATCTGTCCTGCCTGGTCGCTGTGTGCCGTGTTCACCCTAACGATGCCTGTCAGCCCTCACTAGAGGTCAAGGTCAAACCCACCCAGTTTGTCACTCGCTTTGCAATTGACGGCAAGTTCACCTTCGTGGACCAACAAGCCACTACTGTTCTGGGCTACTTGCCACAGGAACTACTGGGGACGTCTTGTTATGAGTACTTCCACCAGGACGACCTGCGACCCCTCGCAGAGACACACAGGAAAGTTCTCCGCAGTAAAGAGAAGATTGAGACCAGCTGCTACAAGTTCAAAACAAAACTTGGCTCCTTCGTCATGCTTCAAAGTCAGTGGTTTAGTTTTATAAACCCGTGGACCAAAGAAATTGAGTTTATTGTGTCAACAAACCGAGTTTTTGGACCTGGTCACACAGAAGCTGAACAGCCGAGCAGCTCCAAGCTGTTGGACGAAGAGAGAAAACATACTATCCTTATCCCTGGCATCTCCAGTGGCATGGCCACTATGATCTACGCTGGCAGCATAGGGACCCAGATAGCAAACGAGCTCTTGGACTCCAACAGGGTCAATTGTTCTCCATCGAGTGAAACCTCCAGTCCTTTCTGTCCACCTCAGGACAGGTCTCCAATGGTCTCCTCTCATGCCAACATGTCAAATGAGGAGGTGACTGATACAGTGAGCAAGCCTAGATTACAGTCTGCTTCAAAGGGGGCCACATACGCTGGCAGCAACACACATATGGACACAGCCCGTTCTCCCCCAGCAGAGAGCTCCCAGATGGACCTGGACAGCATGGTGGGACCAGGCCTTGGTATCCTGAGCAACGACGAGGCTGCCATGGCCGTCATCATGAGCCTGCTGGAGACTGATGCCAACCTGGGGGACGCAGTAGACTTTGACAACATGCACTGGTCTCACTAGCATAGATTCAAATGCCATGAATTCAGGAGAAGAATTTAGATTCCAATTCAAGAATTGAAAAATGATATTTATTCTTATCTACATtacttcatttatttatttaagcaTTTTCAAAGAGGATTTCGTTCAATTCCTGAATTGGGATTTGAATTCACTTccagaattgaaatggaattgacccccaaCTCCATCAGTCCTTAACTCCGTAGTTTATGGTTAGACGAACTCCATCCAGGGACTATTTTCATGTGCTCCGCTACCAAGGAAACAGATTTATGTGCTTCTGAGGGACTTCTACAGCTCTCTGTTTAAGTTTCAGCAAGAGAAATCTAGCCTGCGCTAAAACCAGCTAACTCTTTGGTGGCTTACACAGCTGGTTCAATTGGTGGGAATTTTTTTGATCAATGTTTCAATGTAACTGAATGTGTACTAAAACCACCCGAGTTTGCCTATATCTGGGGGGGGGTCACAGATCGATAGCAGTTCGGTACTCTTGGGGTTCGCGCCGGTGTGAAAGTGATCAACCCAAATTCCAAGGTAGTGGACGGAGGCATAGGTTAATCAATTGCAAAGTATATTAACTCTGAACACTGATCACTTGTGTGAATAACTTGAAATGAAACATTACAAACGTGTCTTCACTCAAATTGTCATGGTCTATTATTACAAAGTGAAATTGTATATTGTTCTGTCTTTTTGCTCTTGCATTGTAGGCTTCTGTGTAGGTGTCTATTGTAAAGACACCAGCATTCCTTTTTCTGAAGTCACTCAAGAGGTAGAGCTGCTTCTCTTGAAATGTTTTCATTTACACTGAAACAGAACACCCTTAAGATGCACCTGCAGGGATGTAATGGAGGCTAAACGCACAGAAACAACTTTTTATTTTGTTGAAAGCATTTACACATTTATTCCGCAACGTTAGCGTTGTTAGCAATAGCATGTGCTTTGCCTATCCTAGAGGAACACAATGGAAATAAGCTCTCGGGCTTGATTGTGTTTTGTCCTCAATGGTTTTAAATATCTGTTCTTCAACTTTTTAATGATCAAATAAAATACTCACTGCCCGTCATCACAACCAGCATTCAGGTCTTACCCAGTTGAATCCTTTTCCACTACATCCCTGTGCATCTGCCTTATACAAACACATCCTAGTCTGTTTGAAATGTGGAGGTGTGAAACTAATCCAGACAAGGAAAATAATGCTTGCAAACAACCTTTTGATCCTCGCTTCAGCAAACTATTGCGAAAGCCTCTTTAGTCCCAGAACTAATCTCGATACCGTGTCTGCCTTTGCTATGAACAGAGCatcactttctctctgtgtgaAGTTTGCACACCTTCCAAATACTTCAAATCCAAGTGCTTGAAAATAAATGAAGTCTGTGTTGCTGGAATTCAATCTAAATGCACTGTACGTTTTGTTCTGCAATTTTGGTTGCGGAACAAAATGAGGGACAAAGGGGAGAAATATCAGTGAATCCGTAATGACTTGAATTGTAATGCCCGTGTGCACTCCTGCAGTGTTGATTATTATTACACGTTTTGGGTGAGGGAAGATCATGGCTTCATGTGCAAAGAATCAAGTAATCTGGCACAGAAAAGCAAATGAATAAACTGCATGTCAAACTTTGATATTCTTTGGCTCTGACCATGCAATGCAATTAAACATTAAAAACAAATCTGAACCCATTAACAAAGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1965058 lncRNA upstream 38046 20401589 ~ 20401806 (+) True G1715040
TU1965057 lncRNA upstream 38849 20400799 ~ 20401003 (+) True G1715039
TU1965038 lncRNA upstream 47033 20391274 ~ 20392819 (+) True LOC110499962
TU1965022 lncRNA upstream 102231 20337098 ~ 20337621 (+) True G1715009
TU1965023 lncRNA upstream 105231 20334293 ~ 20334621 (+) True G1715010
TU1964855 lncRNA downstream 1146 20458130 ~ 20458523 (+) True G1714871
TU1965069 lncRNA downstream 10094 20467078 ~ 20467371 (+) True G1715051
TU1965071 lncRNA downstream 12224 20469208 ~ 20469540 (+) True G1715053
TU1965085 lncRNA downstream 83246 20540230 ~ 20540450 (+) True G1715066
TU1965439 lncRNA downstream 89881 20546865 ~ 20547140 (+) True G1715383
XM_021577053.2 mRNA upstream 7787 20423336 ~ 20432065 (+) False LOC110499971
XM_036957215.1 mRNA upstream 7787 20424506 ~ 20432065 (+) True LOC110499971
XM_036956487.1 mRNA upstream 18227 20418602 ~ 20421625 (+) False med21
XM_021577051.2 mRNA downstream 29357 20486341 ~ 20494712 (+) False si:ch73-352p4.8
XM_021577050.2 mRNA downstream 29583 20486567 ~ 20494712 (+) False si:ch73-352p4.8
XM_036957223.1 mRNA downstream 29583 20486567 ~ 20494712 (+) True si:ch73-352p4.8
XM_021577058.2 mRNA downstream 42197 20499181 ~ 20501970 (+) False rhno1
XM_021577056.2 mRNA downstream 43266 20500250 ~ 20501970 (+) False rhno1
TU1964921 other upstream 325961 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 815938 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 815938 19617394 ~ 19623914 (+) False G1714090
TU1963834 other upstream 852032 19580122 ~ 19587820 (+) False G1714090
TU1963821 other upstream 940629 19498128 ~ 19499223 (+) False G1714090
TU1965448 other downstream 101438 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 541614 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 1718979 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 2261935 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 2325501 22782485 ~ 22784445 (+) True G1717516

Expression Profile