RNA id: XM_021577047.2


Basic Information

Item Value
RNA id XM_021577047.2
length 5497
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC110499967
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20502117 ~ 20536425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTCAGAAGGCACTGTTGCTCGAGAAGACTGATGCTAGTTTGGCTAATgttaggctagctagctaacgtttctTGCTTGCCTGAAGATAGCCGAGCACGCTGAGTGGTAAATCAATCATGGAAGATAATACCAAGCAAAaactaaaatacatattttccacaaCTTGAAATGTAGCTAACTATTATATATAAGAATCAAGCAGAGTTAAACGCGTATCATTAACCATTTGGGCAGTGAATTGGGCAGTGAATTGTAGCTAGGAAAACCCCATCGATTGttggctagctaatgttagcgtgCTTGTTAACGGTAAAGCAGAAAGCGCACAATTCTTCACGGATTGCTCGTAaactttttaatatttttttgtaacaGGAATGTGTTTGAAAATGAGggaatctttttttttattttaactagctatctagctataaCGTTCCATCTGAAAAATGTCCAAATTGTATGAACATACATGTTGACAACGAAGCTATAACGACGTTATAAACATCTAAGGCTCAAGTCTTGAATATGTTGGGTTGCTAACGTTACATTATTGCGTCACGAAAGCCATCAGATGGGGAATATATTACACTCGATTTCTCGAGTTACTGTGTCTTTGTCATAGGAGCTTGCGCCATTCTCCTTAGAGACGGCATCGCAGAAATGTGGGTAGCTTGCTAAAAAATACAGTGTTAGGGCCTATGAGGGGGGGCAATCTTGGCAACATCACTTGGCACGGTCACTACCGAAGAAGTCTCCCGAAACGGAAGAAGTGACAGGATGAACAACATCAACAAAAGCAGACCCTCCAGCTCCGCCAGTTTCTCCCCTACCTCAACAGCAAGTGCCTTTGATGATGAAAGCACCAGCCTCAGGCAGCAGAAGCTGGAAAAGCAGAGGGCGCTGTTGGAGCAGAAGCAGCGGCGGAAGCGGCAGGAGCCTCTGATGGTGCAGCCCAACCCAGAGCCCCGGCCCAGGCGCTCCAGGCCTCGGCGCAGTGAGGAGCAGGCCCCGCTGGTGGAGTCGCGCCTCAGCATCACCAGCGATGTCATCATGGACGGTATCGACGGCCCTGCTGCCTTCATGGGCTCTGAGGCCCCAGACCTGGGTACCAAGATCCAGATTCTGTCGGTGAGCAAGTCCCAGCCCCTGTCGCTGTCCCAGCCGCTGCACCAGTCTCCCCTCGCCGAGGAGCCTGACCGGGACGGGGACACGGAGACTCTGCTGGAGCCCAAGACGGACATCCACGAGCTGCTGCAGAAACGAGGTCTGTCAGGCAGTATGAACTACGAAGAGGCTGGTGAGGATGAAGAACACGTTGATGAAGACCGGCCACGCTCGCTGTCCCCCAACCCAGAGACAACACGGCCTGCGTCTGCCTCCAGCTCAAAGTCCAACACAGAGTGCGTGACACCGGGGTCGCCCACGGCGGAGAGCGCCCTGATCGAAGTGGACAACCTGGAGGAGTTTGTGGTGCGTCCCGCCCTCCGCGGCGTCACCGTCAAGTGCCGCATATCCCGGGACAAGAAGGGAATGGACCGCGGCCTGTACCCCACCTACTTTAtgcacatggagagagaggacggCAGGAAGCTGTTTCTTCTggctgggaggaagaggaaaaaGAGCAAGACGTCCAACTACCTGATCTCAGTGGACGCCACGGACCTGTCACGCGAGGGAGAGAGCTTCATGGGGAAACTGAGGTCTAACCTGATGGGGACCAAGTTCACGGTGTATGACCAAGGCACCAACCCCTGTAAGAACCCTGGAGCTTTGCTGGAGGAGAGCAACACACGACAGGAACTCGCAGCCATCTGCTATGAGACCAACGTTCTGGGGTTCAAAGGTCCCCGCAAGATGACCGTCATCATCCCAGGCATGAACATGAACTTTGAGAGGGTTCCTGTCCGTCCAAACTGTGAACAGGACAGCCTTCTAAGTAAGTGGCAGAACCATTCACTGGAGAACCTGATCGAGCTGCACAACAAGGCCCCCGTGTGGAATGACGACACCCAGTCCTACGTGCTCAATTTCCACGGCCGCGTCACACAGGCCTCCGTCAAGAACTTTCAGATCGTCCACGACAACAATCcGGACTACATCGTAATGCAGTTTGGCAGAGTGGCCGAGGACGTATTCACCTTAGACTACAACTACCCCATGTGTGCCCTGCAAGCCTTCGCCATTGGCCTGTCCAGTTTCGACAGCAAACTGGCCTGCGAGTGACCAACCCCATCACGACTCCTAACTCGCCATTCCCTCCATGGCcttttcaaccccccccccccctcctccaggaCAACGCCAACTCCACAACACcgcccctccacctccccctcacaGGATTCAGCGCCTTCCTtgtacagctcaccaacagtctGCCACTATGAAAATAATCATGAATTATGACCTCTCACCCGTACGTGGTACATCCAATCATGGCACACAAATCACGCTGACTTGGAGAGCGGATGAAGAGAGTGGGTGTGTGAAAGAGAGGACTAAAGCAAGTAGATTTGGGTGGAGGATATAGGATTTTCCTTATCGGCAGAAAAATGAAATTACCGTCCGCAAAGGGAAACTTGTCAAATCATCAAGGCGCCTTtgttttcatttgtatttatctgTAGTTCTGTTTCATTGAGTTTGTATTGCTTTTTGTTGCTTTAGCTGTTGTATATTGGTGATTTTATGTGTATTGAAATTGGTTGAAAGGGAAAAATGACACCAAGCATCATAGACCAAACTGTCGTGGGTACTCCCTGTTAGGGACAGGACTTCTAACACAGACTAGACCAGGTCACAGGAGATGGTGTCTTTGATTTATATCAGATTTGAATGTTTTATAGGCCTCAAAACATGTCTGATGAACTTATGAGTTTGTTCgtttttagcagatgtttttaaaGTTGCCTTTAATGTTGGTTCCAAGTGTCATTTTACTCCCATTTTACATTCTGTTGCCTTCTACAATCACTGTTGTGCGATTCTTTTGACGAACTCTGGAAACTTTATGGTCTATATCCTAAAATTGACCTCACTGTCTTCAAATGGTCACGTGGCTTTGGTTTCCAGACATTTAGCAGCATCAAGATGTTCAATAAGTCTAACGTTAATAGCAGCATCAAGATGTTCAATAAGTCTAACGTTAATAAAAAAGGGTTGACATCGTTTTTCTTCCTCTTGAAGATGAATTTCTCGTAATCACATTTATTTGCCTGCATATCAGAAAGTCTTGAAGTCATGCATGTCCATCCAATGTGTCCTCATCTTGTTTCCTTGTTTTAAAAAAACACGTTAGTAAAAGTATCTCAGTAGCATTCTGAGGAGTTTGGAAGGGAACATTTCTTACTGCAATTCCTTTGTACATGTCATTTTGTGATGTCTTAGCCCCATGTCAAGTTAAAACCACACGGGAAAGTCAATAGAGTTGCCCAGCAAGCACGATTAAAGGATTTCACTATAGTTTTATATAAGATATATCTTAATGTTTGGACATACGGCTCATTTTCAAATATCATGAAATATCAGTCTAAATGTCATTTCAATGTGTGGAATACATAAGTTGGAATCCAAACAATAGAGGAATATTCCGTTTGGATTCCAAGTGACAACGGTCGCCCTGTACTCAGTCTACATTATATGCCAAACTTATCTACCCATGTTAAATGATACCAGATTGAATAATAACACATTTTATTTGTACTGTAACTGGAAGTGTTACTCTGTTCAGCAGACTACACTTGTACTGTACCATGAGGTCATTGAGAACCCACTGGGCAAGAACTGGTTGAATCCACAATGTTTCTACGTCATTTCAACCCCAACATTTGAGGTGATGACCCTGAATCAACGTGGaacactgattggatttgcaaaagggatttttttttaaccCAACCTTTAAATCCAATgactgggtcaaatgttttgttgatttcacgttgaattcacgactcaaccaaatgtaaatcaaaactagatgttgaactgacgtctgtgccccgTGGGAAATTACTTTTGGGGCGACATTTAAGGTGCAAAATAGTTCAAATATgtgcaaaaaatatatttaaaggtGATAAATAAAAAGTCATTTAAGTAGAGTTTTTAGTACACTGAAAAATGAATAAATAGTGGCCTTTTTTACAACGCTCGTTGCTGAAGAAAAGTTTAAAATTACATCACAATGCCAAATTATTACTTTTACAGTATTTTTTTGCACAGGTTTGAACTATTTTGCTTTGATTGAAGTTTCAGCTGGATGGATATGCTATAGAGATGCTTCTGTCCAGTAGTGTGATTCTTGTTCTTGGAGGATGAGGAACATTCCTGGGGTAGCCTGCAGGATGCATTTGATTCCTGGCCACTGATTATGTGTGACAGTGTCGGGAAACAAAGTTAATTCACAAGATGTACCGTTAGAAAGAGGGAAAGGGTTTGTTTGTACAAAATATATAAAAGAGAAATATACAGTTTTACTACAAGATACTTAAGGGGAATTGCATTCCATTCATAACTTAACTTTCTGACGATTTTGGGGGAATTGAATTTCAGAAATATGACTGTAAATAGAATAAATGAAGATATTGTAAAGTGAACAAGACTCCCCTTGTAAGTTTAAGTAATGAATGTATTCagtaaaaaacatttatttgcaCCCTTTCTAattctctacttttgcatatttttttatactaaatgttatcagatcttcaaccaaaacctaatattagataaagggaacctgagtgaacaaataacacaattaCATACTTATATAATTTATTtaataaacaaagttatgcaacatccAATGCCCCTGTGGGAAAAAGTGTCCCCTTAAGCTCAATTACTGGTTGTGCCAGTTAGCtacaatgactccaaccaaacgcttcctgtagttgttgatcagtctctcacgtcactgtggaggaattttggccttCTTGCATGCACAACTGGTTTAACTCTGACAATTGAGATTAGGTCCTGACTTTGACTAgaccattccaaaacttcaaattggTTGCCTTTTAGCAATTTATTTTTGCTTTTTTTATCTAATAttgggttttggttgaagatctgataacattcagtatcaaaaatagaAAGGTGGCAAAAACTTTTTCACAGCACGACTGTATAAACTTCCATTCATAGgccaggttgtagcaacctcatgatgggtacagggagaatgttagtatcatgtagtagcctaaacctatcggtGTTACATtcaactgggtgaatggaatatgaatgacagttatCCAATattctgtaatagaaataaggccatgcttgttttaaaaaaataataatgtcctCCCTAATCATAAACGGAACCGACTGCCCCTGATGTATTCAGTAAACCCATTTATTTTCAATAACATGTTGAAAGCAACATCTAGAACTTTACAGTTATTTTTTCTATATGACCAAGTGTTACAATTGCTTTGATTATTAAAACATTTAGAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1965071 lncRNA upstream 32890 20469208 ~ 20469540 (+) True G1715053
TU1965069 lncRNA upstream 35059 20467078 ~ 20467371 (+) True G1715051
TU1964855 lncRNA upstream 43907 20458130 ~ 20458523 (+) True G1714871
TU1965058 lncRNA upstream 100624 20401589 ~ 20401806 (+) True G1715040
TU1965057 lncRNA upstream 101427 20400799 ~ 20401003 (+) True G1715039
TU1965085 lncRNA downstream 3805 20540230 ~ 20540450 (+) True G1715066
TU1965439 lncRNA downstream 10440 20546865 ~ 20547140 (+) True G1715383
TU1965769 lncRNA downstream 259587 20796012 ~ 20796250 (+) True G1715696
TU1965776 lncRNA downstream 264195 20800620 ~ 20801129 (+) True G1715703
TU1965778 lncRNA downstream 269195 20805620 ~ 20805915 (+) True G1715705
XM_021577058.2 mRNA upstream 460 20499181 ~ 20501970 (+) False rhno1
XM_021577056.2 mRNA upstream 460 20500250 ~ 20501970 (+) False rhno1
XM_021577055.2 mRNA upstream 460 20500261 ~ 20501970 (+) True rhno1
XM_021577050.2 mRNA upstream 7718 20486567 ~ 20494712 (+) False si:ch73-352p4.8
XM_021577060.2 mRNA downstream 50805 20587230 ~ 20631763 (+) False LOC110499976
XM_036957225.1 mRNA downstream 50814 20587239 ~ 20631763 (+) True LOC110499976
XM_021577064.2 mRNA downstream 335641 20872066 ~ 20890939 (+) True LOC110499978
XM_021577065.2 mRNA downstream 395048 20931473 ~ 20943290 (+) False LOC110499979
XM_021577066.2 mRNA downstream 395075 20931500 ~ 20943290 (+) True LOC110499979
TU1964921 other upstream 388539 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 878516 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 878516 19617394 ~ 19623914 (+) False G1714090
TU1963834 other upstream 914610 19580122 ~ 19587820 (+) False G1714090
TU1963821 other upstream 1003207 19498128 ~ 19499223 (+) False G1714090
TU1965448 other downstream 21997 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 462173 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 1639538 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 2182494 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 2246060 22782485 ~ 22784445 (+) True G1717516

Expression Profile