RNA id: XM_021577066.2


Basic Information

Item Value
RNA id XM_021577066.2
length 1351
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110499979
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20931473 ~ 20943290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCTTGATGACTTCCAGATGACAGCCCAGACAGCCTGGCCCGAGAGAACTCAGCACTcagtcacagacagagagagaggggggaggcagagatagggtaggggaggagagagagaaacagacagacaaaggaaAGGATGAAGCAGTTGCATGTGAAGTGGTTTAGCAGTGCTCCAGTCAGCGTTCTTACCTCATTCTCCTGATGGTTGTTGGTACACAGCTCTCTCCAGCTGGGGCCTGGCTGGCTGCTGTGATTAGCTGGTGACTGATCCACATTCAGATCCcattgagacagacagacgacagggcagtgtcagtgtgtgtgtgctgggccGAGAGTCAGCATGATGCATCAGTGGGGTCTACTCATCACTGTGTTCTACTGCCAGCTGTTCCTGGCTGCTGCTCAACACTGGAGGAAAGCCCTTTACCCATCAGCCTTTAGAGTGAAGCGTGGCACACACTCATTGGTCAACCCCACCTTCCAGAACTCTGTGGAAGATGTTAACCTGCTGTTTGAGATCCTGCTGGCAGGCCTGCAGATCGAGGGTGAGGACAAGCCCTTCGTGATCCCAGACATGGAGCTGGCGTCTCTGAGGTCGGTCCAAAAGCTGGAGGTTATCTGTGAAGACGTCCTGCCCAAGAGACTATCCGAGATCAGACGTTTGACCTCCCACCTGTCCCAGCGCAGAGGTGCCCTGAGCAGGGAGGACTTTGAGCGCACAGTGCTCACTATGGTGTACACTGCCCAGACTCTGGCTCATACCACCTCCCAACACCAGAAGGCGCTGTGGGGAGACGCCCTGCTGCAgctgttcagggccatacaagaAGATCTGACGCCCCCACCCAGGACACCTCAGCACTAGTGTTATGGACATGTGGACACATTATTTtagataatataatatactgatTATTTTATACTGTAAAACAAGAGCATTTGAAGGATGTTTTCTATTGAGTTGTATTGTATTATCAAAATGACTGTTCTGATAATGTAATATGTTTGGTTATGATCAAATGTTATGATCTAATCATATTGCAAGGAGGGTGTGGGAAAAGGAGGGATGTGAACTATATCTTGTTCATGTTCTATCTATTGGATTCCGCCTTGTTCCAGGACTTCAGATGTaaacaaacattttaaatattttatcaGTCACTCTGTCATCATGATTCATAACAGGTCTTTATCAAATCTTCTGTCATAATCTTCTCAGCTGTTTATCACAATCACATAATCTTTCCCCAGCACAGTCCTATGGCGAAAAGGAGCTTCGGATGAAGACAGGGGAATCAATTTGCTCAGCTTATTTCTCTGTAATTGATattataataaaataatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1965835 lncRNA upstream 82985 20848238 ~ 20848515 (+) True G1715762
TU1965825 lncRNA upstream 89554 20841654 ~ 20841946 (+) True G1715752
TU1965824 lncRNA upstream 89924 20841359 ~ 20841576 (+) True G1715751
TU1965816 lncRNA upstream 97278 20834007 ~ 20834222 (+) True G1715743
TU1965801 lncRNA upstream 107059 20824103 ~ 20824441 (+) True G1715728
TU1965906 lncRNA downstream 57647 21000937 ~ 21001129 (+) False LOC110499980
TU1965903 lncRNA downstream 59561 21002851 ~ 21004436 (+) True LOC110499980
TU1965927 lncRNA downstream 63872 21007162 ~ 21009324 (+) False G1715851
TU1965928 lncRNA downstream 63872 21007162 ~ 21008255 (+) True G1715851
TU1965932 lncRNA downstream 69003 21012293 ~ 21015504 (+) True G1715855
XM_021577064.2 mRNA upstream 40561 20872066 ~ 20890939 (+) True LOC110499978
XM_021577060.2 mRNA upstream 299737 20587230 ~ 20631763 (+) False LOC110499976
XM_036957225.1 mRNA upstream 299737 20587239 ~ 20631763 (+) True LOC110499976
XM_021577047.2 mRNA upstream 395075 20502430 ~ 20536425 (+) False LOC110499967
XM_036957238.1 mRNA downstream 11286 20954576 ~ 21004439 (+) False LOC110499980
XM_021577068.2 mRNA downstream 19491 20962781 ~ 21004439 (+) False LOC110499980
XM_021577067.2 mRNA downstream 19529 20962819 ~ 21004439 (+) False LOC110499980
XM_036957240.1 mRNA downstream 74917 21018207 ~ 21039654 (+) True LOC110501024
XM_036957236.1 mRNA downstream 144064 21087354 ~ 21346670 (+) False LOC110499983
TU1965448 other upstream 372749 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 817609 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 1307586 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 1307586 19617394 ~ 19623914 (+) False G1714090
TU1963834 other upstream 1343680 19580122 ~ 19587820 (+) False G1714090
TU1965907 other downstream 55308 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 1232673 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 1775629 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 1839195 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 1877462 22820752 ~ 22879923 (+) True G1717520

Expression Profile