RNA id: XM_036957240.1


Basic Information

Item Value
RNA id XM_036957240.1
length 2739
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110501024
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21018207 ~ 21039654 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGTATTCGTGTAGCCAGCTGGTGGTAATTGTAGTTGAATGAGCAGAGCTCACTGTGGCAGTGAAAGACGGAcgtgctgagacagagagagcaattCGCCGTGGAACTGTTTTCATTTACAGCTATTTATGCCACGACGAGAGAAATAGCTTACACTGACTGAAAGCGTAGGAATATAGTGGACTAAAGAAGCACACTCCtggtccttttttttttttatcttaaaaaaaaaagtataaatccAAGCGACCCGATAGCTTTCACACAAGGGCGTGTGTGGGTCTCCGGGAGCAGCGGCTCGCTTTTTAACTCTTGCATGTTGGTTCTgtatatatttgatatttttgcATCACTTGGGTCCGGACAATTTGCTTGAGGATGGGGTGTACCCTGAGCACGGACGATAAGGCGGCGGTGGAGCGCAGTAAAATGATCGACAGGAATCTGCGGGACGACGGGGAGAAAGCCGCAAGAGAGGTCAAGCTACTGCTTCTCGgtgcTGGTGAGTCGGGGAAGAGCACAATAGTCAAGCAGATGAAGATTATCCACGAGGCAGGCTACTCGGAGGAGGAGTGTAAACAGTACAGGGCTGTGGTCTACAGCAACACCATCCAGTCCATCATCGCCGTCATCCGAGCCATGGGAAGACTCAAGATCGACTTTGGAGACGCCGCCAGAGCCGATGATGCGAGACAGCTGTTTGTGCTGGCGGGGTCGGCAGAGGAAGGCTTCATGACAGCGGAGCTGGCCGGGGTCATCAAACGCCTGTGGAAGGACGGAGGGGTACAGGCCTGCTTCAGCCGCTCACGAGAGTACCAGCTCAACGACTCTGCAGCATatTACTTAAACGATTTGGACAGGATATCCCAAGCCACCTATATCCCGACCCAGCAGGATGTCCTGAGGACTAGAGTCAAAACCACAGGCATTGTGGAGACACATTTCACCTTCAAGGACCTCCACTTTAAGATGTTTGATGTTGGAGGTCAGAGGTCCGAGAGGAAGAAGTGGATCCACTGCTTCGAGGGTGTCACTGCCATCATCTTCTGTGTGGCGCTCAGCGACTATGATCTGGTGCTGGCTGAAGATGAGGAGATGAATCGGATGCATGAGAGCATGAAGCTGTTTGACTCCATCTGCAACAACAAGTGGTTCACAGACACCTCCATCATCCTCTTCCTTAACAAGAAAGACCTGTTTGAGGAGAAGATCAAGAAGAGTCCTCTAACTATCTGTTACCCAGAATACGCAGGCTCCAACACTTACGAGGAAGCTGCGGCCTACATCCAGTGTCAGTTTGAGGACCTGAACAAGAGGAAGGACACCAAGGAGATCTACACTCACTTCACCTGCGCCACCGACACCAAGAACGTGCAGTTTGTCTTCGATGCCGTCACTGACGTCATCATCAAGAACAACCTGAAGGACTGTGGACTCTTCTAAGACCTGGATTTCATCGATGGAAGTTTTCTGgtggTGAAAAGCCAGCATAATGTGCGTTTTCGGGGAGAAGTTCACAAGAATCTGATTGGGGAGAATCAATTATGGACCATTGCTGTACTATATGCCACTTTTAACagatttatttatgtttttgtcTTGGAACATTTTGAATTGGCGTTTAAACATTTGTGTTGGATGTTTGTGTCGTTGTAAAATCATTttcacactttttttttctttttttggaaGAGCAAGCTTGTTTTATTTAGTTTGTTCCTTTTTTAAGCCCTCTCTGGAAAAGGAAGCTTGTTTTATTTAGTTTGTTCCTTTTTTAAGCCCTCTCTGGAAAAGGAAGCTTGTTTTATTTAGTTTGTTCCTTTTTTAAGCCCTCTCTGGAAAAGGAAGCTTGTTTTATTTAGTTTGTTCCTTTTTTAAGCCCTCTCTGGAAAAGGAAGCTTGTTTTATTTAGTTTGTTCCTTTTTTAAGCCCTCTCTGGAAAAGGAAGCTTGTTTTATTTAGTTTGTTTCTTTTTTAAGCCCTCTCTGGAAAAGGAAGCTTGTTTTATTTAGTTTGTTCCTTTTTTAAGCCCTCTCTGGAAAAGGAAGCTTGTTTTATTTAGTTTGTTCCTTTTTTAAGCCCTCTCTGGAAAAGGAAGCTTGCATTTTGGTGGAAATattctttttctccctccccaATTGTTAGGGGAAAGGGATTTGAGCTCAGTTTGTTTGTACTTGTGCCTTTTGCATGTCCTTTTTCTCTGCAGTCACTGACCAAATTGCTATTTTTTTTGCCTGCTGAAATCGTTCCAACATAAACGGTGAAACGTTTCCTGAGGGATATTAACAATCTTTTGTGCACATTCCCAACCAATTTAGTGGCGAGATTCCTCGTGGTCcaaaggtgtgtatgtgtgtctcgaTGGTGACCATCACCAGCCCTGCCCACAGGCTGTCCCATACTGACAAAGGGATGTGGTTTTTAACAGTACACCATATCCTATGTGTATCCAATATGAACCCTAGCTAGGTCAGGGAGCTTACGTTAtgctgtgtaatgacagaatagcTCAATCGGAGTCATATTTTACTGTATATTTTAAGATTTATTTAAGGTGGCTTCGGGGACTTGGTCTCTGCGATCACTGCAGAATCACAATTGTAAAGTAAAAATGAATGGGGAACAAACACATGGTTATGGTCTGTAACCAGCCACAGCTGTCTGTGTTCTCCAACAGACAGGGAGCCTTTGTACACTCATTCCCTTATTTTGCTAATAAAACCCTTTACAAACCA

Function

GO:

id name namespace
GO:0007193 adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0031821 G protein-coupled serotonin receptor binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function

KEGG:

id description
K04630 GNAI; guanine nucleotide-binding protein G(i) subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1965936 lncRNA upstream 2112 21015845 ~ 21016095 (+) True G1715859
TU1965932 lncRNA upstream 2703 21012293 ~ 21015504 (+) True G1715855
TU1965927 lncRNA upstream 8883 21007162 ~ 21009324 (+) False G1715851
TU1965928 lncRNA upstream 9952 21007162 ~ 21008255 (+) True G1715851
TU1965903 lncRNA upstream 13771 21002851 ~ 21004436 (+) True LOC110499980
TU1966031 lncRNA downstream 98997 21138651 ~ 21139053 (+) False G1715945
TU1966032 lncRNA downstream 98997 21138651 ~ 21139053 (+) False G1715945
TU1966033 lncRNA downstream 98997 21138651 ~ 21139053 (+) False G1715945
TU1966034 lncRNA downstream 98997 21138651 ~ 21139053 (+) True G1715945
TU1966064 lncRNA downstream 127257 21166911 ~ 21167360 (+) True G1715966
XM_036957238.1 mRNA upstream 13768 20954576 ~ 21004439 (+) False LOC110499980
XM_021577068.2 mRNA upstream 13768 20962781 ~ 21004439 (+) False LOC110499980
XM_021577067.2 mRNA upstream 13768 20962819 ~ 21004439 (+) False LOC110499980
XM_021577065.2 mRNA upstream 74917 20931473 ~ 20943290 (+) False LOC110499979
XM_021577066.2 mRNA upstream 74917 20931500 ~ 20943290 (+) True LOC110499979
XM_036957236.1 mRNA downstream 47700 21087354 ~ 21346670 (+) False LOC110499983
XM_036957235.1 mRNA downstream 47701 21087355 ~ 21346731 (+) False LOC110499983
XM_036957237.1 mRNA downstream 47701 21087355 ~ 21346731 (+) False LOC110499983
XM_036957227.1 mRNA downstream 47703 21087357 ~ 21350552 (+) False LOC110499983
XM_036957228.1 mRNA downstream 47703 21087357 ~ 21350552 (+) False LOC110499983
TU1965907 other upstream 18070 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 459456 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 904316 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 1394293 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 1394293 19617394 ~ 19623914 (+) False G1714090
TU1967360 other downstream 1136309 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 1679265 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 1742831 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 1781098 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 1810238 22849892 ~ 22851407 (+) True G1717517

Expression Profile