RNA id: XM_036957227.1


Basic Information

Item Value
RNA id XM_036957227.1
length 8438
RNA type mRNA
GC content 0.54
exon number 22
gene id LOC110499983
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21087354 ~ 21350552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAACTCTGCATCCTACAACTGTGGAATTTCGGCAACAAAGTATCCATGTCTCTAAGAACTCGGAAAATGTGTCTGTGAGAGATGGAAGCGAGGCGGCTGCTTTCTGCTTCTTCCCAGGTCAGTCTGATCTGATGCGCGTGGCCATGCCAGTGGAAAATACCGTTAATTTTCTCTCCTTCATTTTTTCCTTTCTGCGGGAAGCTTCGGATTCGGGAGCCTTGCCTTCTCTCCTCCTACAGACATCACATCCGGGTCAGTTGGCTGCAACTGTGTGTATATCGAGCTCAGTACAGCAACGCAGGCTGAGACAGCTGCTGTGTATCCTGTGCTGACATGGATACGACCACTGGCGTTTGTTGAAACTGTTCACCATAACATCAAGCTGGGAAGCTAAAACCAGGGACGCCCGCGGAAAGGACCGATAATTTCTTGCATGGGTGCCCTCAAGGGATAGCCACTATTCAGCCATGTCCAAAAGCCTGAAGAAGAAAAACCACTGGACCAACAAAGTCTACGAGAGTGTCCTTTGCAGGAATAAGGAAGGGGAGCTTGGGTTCGAGTTGAAGGGAGGCGCGGAGAATGGACAGTTCCCATATCTTGGGGAGGTTAGGCAAGGCAAGGTGGCCTGCCAGAGCGGCAGACTGTCCCAAGATGAACTACTCCTTGAGGTCAATGAAACGCCAGTGGCCGGACTAACCATCAGGGACGTACATGCAGTGGTCAGACACAGCAAAGACCCTGTCCGCCTTAAGTGTGTCAAACAAGGGGGCGTCATAGACAAGGACCTGCGTCACTACCTCAACCTGCGCTTCCAGAAGGCCTCAGTGGACCACGAGCTCCAGCAGATCATTAGAGACAACCTCTACCTCCGCACCATACCCTGCACAACCAGGCAGCCCAAGGAAGGAGAGGTCCCGGGGGTGGACTACAACTTTGTGACTGTTGATCGGTTTATGGAATTGGAGAAAAGTGGAGCCTTACTAGAGAGCGGAACTTATGAAGaGAACTATTACGGTACCCCCAAGCCCCCGTGCGAGCCCAGCCCTCTGCTGCTAAATGTAACAGATCAACTCCTGCCGGGCGCCCGACCCAGCTCCAAGGGGAAGAGGAAACGGAACAAGTCGGTCAGCAACATGGAGAAGGCCGGCATCGAGCCACccgaggatgaggaagaggagaggcccGTTGTCAATGGCAACGGCAATGGCATCACCCCAGAGTCCAGTGAACATGAAGACAAGAGTACAGATGTCTCCTCGGGGGACGTCCCCACCCAGACCTGTCCCCCCACCGAGACCCCCACCACCCCTAACAATGAGGTCCCCCAGGAGGAGGGGGGCGAGCTAGCCAAGTCGCCCCCCAAGCCAGATGAGAATGAGAGTGAGCTTGGCCCCCTGCCAGAGAACTGGGAGATGGCCTACACAGAGAAGGGAGAGGTGTACTTTATCGACCACAACACCAAGACGACGTCGTGGCTGGACCCGCGGCTGGCGAAGAAGGCGAAGCCACCAGAAGAATGCAAAGAGGACGAGCTGCCGTATGGCTGGGAGAAGATCGATGACCCTATTTACGGAAGCTACTATGTGGACCACATAAACAGGCGGACACAGTTTGAGAACCCAGTCTTGGAAGCCAAGAGGAGAGTCCAGCAACACCAGCAAATGCAAGAGCAGGGTCTGTCCTCGCTgcccctacctactatctacagAGAGAAGCCCCTGTTCACACGGGACGCCACCCAGCTGAAGGGCAGCTTCCTGTCCACGGCCCTGCAGAAGAGCAACATGGGTTTTGGCTTCACCATCATCGGAGGAGACGAGCCAGATGAGTTCCTGCAGGTCAAGAGTGTCATACCTGACGGCCCCGCTGCACAAGACGGAAAGATGGACACAGGTGATGTCATCGTGTACATCAATGACGTGTGTGTCCTGGGCACCACCCATGCCGACGTGGTCAAGCTGTTCCAGTCAGTGCCCATCGGGCAGAGCGTAACCCTGGTGCTGTGCCGTGGCTACCAGCTGCCCTACGACCCCGAGGACCCGGGCGCCAGCGCcggcaccaccaccaccctcctctctcccctgggcCTGATGGAGCAGCGCCCCCTCCTGGTCAATGGACGCTCCAACTACGACAGCTACATGGACTACATCTCGCGCACGGCACGTTTCGTCCAGGAGCACGGTGACCAACATCTCAAcgcccaccaccaccatcaaccccCTCCGCCGCCGCACCCCGGCGACACCCACCTGGACGGCTCCTCCCTGACGCCCGGCGGGCCGCACGGCGAGGACTCGGTGTCCATGGCGTCATCGGGGGCGACGCAGGCGGAGCTGCTGACGCTGACCATGGTGAAGGGGGCGGAAGGGTTCGGGTTCACCATCGCAGACAGCCCGACGGGCCAGAGGGTGAAGCAGGTGCTGGAGCCCCAGGGGTGTCCTGGTCTCTGTGAAGGGGACCTGATCATAGACATCAACCAGCAGGGAGTGCAGGGCCTCAGTCACACCCAGGTGGTGGAGCTGCTCAAGGAGTGTGCCGTCGGGGCTGAGACCAGCCTGGTCAtccagaggggtggaggagGTCACTATTCACCCTGGAAGACCCCTAAACAGGTGTTGGAGCAGTGGGACGCGGCCCAAGGCCAGGGAGGGGGTCAGGGCAGCCCCCAGACCAGTCTGTCTGCCCCCGTTGTCCCCCACAACGCCCCCTTCCTGACCCGCCACCTCCACAGGGCCTCAGTCCCAGACTCTGCCCTCCCCGAGGGCTTTGATCTGAGCAGGCCCGACCCCTATGACCTCTATGAGAAGTCCAGGGCTATCTATGAGAATAGTAGGCAGCCAGGCCTGCCACGGACCATCTTCTCTGTGGACCACTCTGGGGCAGAGTACCAGGAGGTGGAGGTCCACCTGAGGAGGCAGAAGTCCGGCTTCGGCTTCCGCATCCTTGGGGGAGACGAGGCGGGTCAGCCTGTGAGTCCGGACACCCGTGAGAAGATTCTGATTGGGGCCATCATAGAGAAGAGCCCTGCAGACAGAGACGGGCGCCTGCGGCCAGGCGATGAGCTCATCTTCGTGGACGGGATCCCGGTGGCGGGGAAGCCCCACCGCTACGTCATCGACCTGATGCACGGCGCCGCCCGCAATGGACAGGTCAACCTCACCATCAGGAGGAGGCTACAGGGCCCAgGAGAGCCGTGTCCAGAGAACGGCCGCAGCCCCGGCTCTGTGTCCACCCAGCACAGCTCCCCACGCAGCGACTTCACCAACGTCACGTATCCTGGCAACAACGCAGCCCCACCCACTGACGCCATGGGTACAGGTAGCACCACAGACGGAGAGCCGACCTCCAGCGTGCAGCAGCCACCGAGTGATGTCATTATCCACCGCAAGGAGAGTGAAGGGTTTGGATTCGTCATCATCAGCTCGCTCAACCGGCCCGAGACCGCCGCCGCCATCAgCGTGCCCCATAAGATTGGGCGTATCATCGACGGCAGCCCGGCGGACCGCTGTGGCAAACTGAAGGTGGGTGACCGCATCCTGGCGGTAAACAGCCAGTCCATCATCAACATGCCCCACGCCGACATCGTTAAGCTCATCAAGGACGCCGGCCTCAGCGTCACCCTCCGGATCATACCACAGGAAGaGCTGAGCCCGTCAGCCCCTAGCTCAGAGAAGCAGAGCCCAGCAGTGACCCAGCAGCACAGTCCTCAGGCCCAGCCCAGTCCCGCCGTGGGCCAGCCCATCCCTGCAGTCACCCAGCCCAGCCCTGCAGTCACTCAGCCCAGCCCTGCAGTCACCCAACCCAGCTCCCTGACCCATCAGAGTCCCATCACACAGACCCCAGCCCCCCCACCCCAGATCTACACCCACGACAGCAGTTACAGGTCAGAGGTGAAAGCGAGGCAGGATGTGAAACCGGACATTCGACAGCCTCCATTCACAGACTACAGACAGCCCCCGTTGGACTACAGACACCCTCCTGTAGCAGACTACCGCCAGCCACCCACCCTGGACTACAGACACCCTCCTCTGATGGACTACAGACAGCTGTCCACTGACCCCAGGCACTTCCCTATGCCTGTGCCCCACGACTACAGACAGATCCAGCCACAGATGCCACAGGTCTACCAGGACTTTGACTTCTTCACCGTGGAGCTGGAGAAGAGTGTGAAGGGGTTTGGCTTCAGTATCCGTGGAGGGAGGGAGTACAAGATGGACCTGTTTGTCCTGCGACTGGCTGAGGACGGACCCGCCATCCGCAACGGGAGGATGAGGgttgGGGACCAGATTATTGAGATCAATGGGGACACAACCAGGGACATGACCCACGCCCGGGCCATCGAGCTCATCAAGTCAGGGGGCCGGCGGGTGCGTCTGCTCCTGAAGAGAGGCACAGGGCAGGTCCCAGAGTATGACAGTACCTCCCCCTGGGATGCACGCCCTTCAGCCTCCCCAAGTCTGTCGGAAGTAGCCCTGCCCCCAGACACTCTGACCATGCCATCGCCCTCATCTCATCTGACCCCGTCCCAGCAGCCCCCAGGCCCCGACCTGGCTCGCCTGCCACCACAGGAGGTCCCGCGGGAGCCGGCGGTGCAAGAGAGCAGGAAGGCGGATCGCTCCCAGAGCCCCCGGAAGGCCCCGACCGAGCCGCAAAATCCGGACCAGACCGGCCACGGGAGGAGGGACCGGGACCGGCCCAGTGGGAGTGGTTGCAGTAATGGGAGGGCCAAGCAGAAGGAAGGTGGCAGGTCCACCCGCAGAGGGAGCTGCCCCAAAGAGGGAGGGCCGGTGGGGAGGGATGAGCTGCTACCTGGGGGAGGGGAGCCCAAAAGCTCCTCCAGGGGGAGGTCTAAGGAGAGGATAGCTGGGGAGAGCAGCAGCACGTCCCACGGGAAAAGAGAACCCACACAGTCCCCGACGAAAGGCTCCAAGCCCTCATACACAAACTCTAACGGGAACGGCAGCAGCGGTGGTACTCAGAGCGGCAGCAGCAGTCACCCAGACGTTAGTGTCGGGCATCAGGGGGAGCCGGCGCAGGAGAAGCCCAGgcccagagaggcagagaggggccctggagagaccaggccctgccgccccaacaagagcaccagcagcagcagcacggcAGCGGGTAGGAAGGCCACTGTGTCCCCTGGGCCCTGGAAGATCCCCGGCTCTGACAAGCTGCCCAGCACCCTGCGCTCGGGCACGTCCACTGTGAGCAGATAACACCTTGGAGTATACCCACTACCAGGCACCCAGGCCGGGCTACACTAAGCCTGGCTAGCCCCTTCATTGGCTCCCCTCACCCTGCCTGCACTCCCCTACCCCACCCTCTAGACCTCAGATGTAAAGGGGGGTTCCTCCATGCGTTTTTAGAGAACCATTTTTATTTATATTGTACTCTAAATTATTTTGAGAGATATTTTACACCGACCACCTTAAGAACTGGAAAGCATCCACTTAAAAATTCAAAACAAGAAGAAACCAAGCAGAATGTGTGTAGCGTGACTGGATCCTTGAGCAGTGTTAAGGGGTCCGAATACAGGAACTTCATTTGGAAGTGCTCAAATCCCCACAGCACTCCAGTCCAGGACGTACATGCAAATTGAACCACTCACCGATTGGTTGACTGTGACACTGCAGTTTTTTTTATACAATGAAGTCTATTTTATGAAAGGAATGTTGAAGAGGGGTTGCCTGTTTTTGTGTATTTTAAAAAGAGAGAATGAAAACCAGAACTAGAAAAAGAGTATACGCATTAATGGGACTTTGCCTTAAATAAGAGACTGTACGAGACTGAAGAAGCTATCCCGAGGAATCTATCAAATGGTAtagaaataaatatattatatgaTGAGTATTAATATGTGGGACGTGATCATCTCTAATGCATACCTAGTCGGGCCAATGGTAGCTCTGAGACGCCTCATAAGCTAGACGAACGAAGGAGCACAACACCGTTTTTCAACACTCCCTTATAACTCCACAGCCACAAATCCACTATAATATTGCATTTCTAGTCTGTGTGGACCCATTCTACGAGACTGCAGTGGACTCTAAGGGCTGTACGTGCTTGAATCATCAACGGTTGGGTCACAGGAGATACATTTCCCCCTCACTGTGCTTCGCGAACAAAGCAATTTGCTGAGGTTTGTCTGGTGGACAATGTGGAGAGAGTGAAGGCTCATGGGATATCGGGGCAGAGTGCCTTACGATACGGACAGAGAGGTCTGTTATGGACTTAAAGAACCTAGAACACTCTCTAGACTGATGTGGTTCAATCCAGGCTGCTACCGTACAGTCAACACCAATGTCCCAATATTCATATACATCTGTGCCATGACGGACATTCATGGTTTTATATCTGATTGTTGAAATTTGTTCACTATATTTACAGACCCCACAGTATTTATTTGGTCAGAAAACATTAGCAAATCTTTCCATTTCCTTACAGATTGAAGATAGTTCCACAACTTTTGGGGTTCTGTTGGTATCTCATCGTCAGATATCGAAACGTCTAGGCAGAACATCTCTAACAGATGGTGTAATCAAGCTGTAGCTACACAGAATGACGTGTTTGGGTGAAAATATGGCACGGGTATGAAAGCAGGAAACTCCACTAGTATTTCTGGTGGggatcagagggagagagaaacattgCCATTTGTCACGAGCTCATTCATCACAATGTGTCTAATGGTCTGTGGCTTCACTTAACGCTGTTCATTTACACAACACATGAAACACGTTTATCTCCCAAAGACGCATATGTATACTTTACAACTGACAACTGTCTGGATATTCATTTCAACATTTGTTTAGTCTCTAAGTGTCTACATAGCCAGTGacgttaatatatatatacatctctctctaccaGATTGTGGCCCAATTAACTTCGGAGCTCTAGGCAGTGGAGGCTCTGTCAGGGGCTCTGTCTGCACTCCCCCATTaccagtttacacacacacacacacacacacacacacacacaggtacacagttaagacacacacagtaacacacacacacgcgtcccTCAGAACCGCCTTGTCATCCGATGACTAAGGTAGAGTTTTTTGGTTTTTTAAACCCTCTCAAACCCTCTCTCTGGGCCTGGGACTCACAGAAGCGAATTCATCTGTCACTCTGATAACTAGTATACTATACATGGAGATGTGGAGAGACTACAATCATCTAGACATTATGATCATTGACAGACACAAGAATCATTCTTGGCGATAAAAGAAAAGTCATTAAGGAGCAATCCGAATGTGTCCCCTTTAGTTTCTGCAGACATCTGATTTTTGAGTGGTAATTTGCAGTGTGTCGAGCTAacaatccagcaaagggaggacgACATTGGCAGAACAAAGCTGTCCCCCTCGGGTGGAAGAAATGCAGACAGTCTTTCAGAATAGCAGTAATTACGAGAGAGGTGAGTGATGCGCTGAGCCCATTGGAATCTCTATTTATGAGAGGAAAATATATTTCTTTAAAGCACAAAGTGGTTCAGAGAAATGGTATATAAATTGTGCTGGGCAACTGACCCTGAGTAGACAAGAGTCTGTGGCTCAGCCACTGTCTGGGCCTGTTTGAATACTTTAACAATgcatccttcctctcttccttctctctttcctaaCGTCTTGTAAGAACAATGGTTACTTCAAGTAagtaggcagcaggtagcctagatgttcagagcattgggccagtaactgaaaggttgctggtttgaatcccgagcTGAATAAGTGGAAAAtcttcccttgagcaaggcacttcaccccaattgctctggataagagcatctgttaaatgacaataaataaatatataataatggaaAGCAGGTACATGTTCATTCACTGGTTACTTCAAGAAAGGATTCATTTGAACAGTGCCACTGTGTTCACCCCACACACAACCATTCCTATAGTGTCTGGCCAGTCCTGACTGTCTACTGCACCTTCATCACTAAGCCTATCATGACTTCTGTGTAGACTAGAGACAAGAGAGAATGTCCTTCCTTCGTTGCACAGTTCGCCACTTTTTCTCGTCAGAGCAGTCCCCCATTGAGGCAAATATCAGTACTTTTCTATGGACAGATCAGAAGAGATAGGTATATCTAAAACGGTGAGTGTGTTGAAGACTGGCGGCACGTACAATACATGAACCCCCTGAGCCTACCTAATGCAGCAGGGTATCACTGTGTAGTGTTATTATTAGCCGTGGTATTGACCTTGTACAGGTGTGTCGCTATTATAAATATGACtcaatgtattattatggatAGTCCCAGACTATAAGTGAACGGCCTATTTTTATGAAATGCAACACTATGGATATATTAACTTTTGCAGAAATCTTGTTTACCGTATGATATTCTGAAATGCTGTCAAATAAAATCTTGACACGGTGTAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1965936 lncRNA upstream 71262 21015845 ~ 21016095 (+) True G1715859
TU1965932 lncRNA upstream 71853 21012293 ~ 21015504 (+) True G1715855
TU1965927 lncRNA upstream 78033 21007162 ~ 21009324 (+) False G1715851
TU1965928 lncRNA upstream 79102 21007162 ~ 21008255 (+) True G1715851
TU1965903 lncRNA upstream 82921 21002851 ~ 21004436 (+) True LOC110499980
TU1966176 lncRNA downstream 69955 21420507 ~ 21423854 (+) True G1716078
TU1965984 lncRNA downstream 100568 21451120 ~ 21452381 (+) True G1715904
TU1965990 lncRNA downstream 199989 21550541 ~ 21553761 (+) True G1715907
TU1966223 lncRNA downstream 203712 21554264 ~ 21554515 (+) True G1716118
TU1965987 lncRNA downstream 241136 21591688 ~ 21593104 (+) True G1715905
XM_036957240.1 mRNA upstream 47703 21018207 ~ 21039654 (+) True LOC110501024
XM_036957238.1 mRNA upstream 82918 20954576 ~ 21004439 (+) False LOC110499980
XM_021577068.2 mRNA upstream 82918 20962781 ~ 21004439 (+) False LOC110499980
XM_021577067.2 mRNA upstream 82918 20962819 ~ 21004439 (+) False LOC110499980
XM_021577066.2 mRNA upstream 144067 20931500 ~ 20943290 (+) True LOC110499979
XM_036957242.1 mRNA downstream 6471 21357023 ~ 21410835 (+) False LOC110499985
XM_036957241.1 mRNA downstream 6472 21357024 ~ 21410835 (+) True LOC110499985
XM_021577079.2 mRNA downstream 75018 21425570 ~ 21448889 (+) True LOC110499986
XM_036957256.1 mRNA downstream 105293 21455845 ~ 21485720 (+) False LOC110501025
XM_036957257.1 mRNA downstream 105293 21455845 ~ 21485720 (+) False LOC110501025
TU1965907 other upstream 87220 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 528606 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 973466 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 1463443 19602461 ~ 19623914 (+) False G1714090
TU1967360 other downstream 825411 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 1368367 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 1431933 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 1470200 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 1499340 22849892 ~ 22851407 (+) True G1717517

Expression Profile