RNA id: XM_036957242.1


Basic Information

Item Value
RNA id XM_036957242.1
length 3258
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC110499985
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21357023 ~ 21410835 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcatcaacaaaactaaggacgGCATCCGGAAAGGGGCCGTCTCAGGTGAaccaaaagaaaaaagaaaacaacGATTTCCATAACTGAGAAAAGgtgcgtctctgtctgtctggaacaCGCCCTCCAGTTTCTCTCATCCCATATCATCCATAACCACGCTCCTCCTCTGTATTCCGTTGGGAGACATGAGAGAGGCCGGCTGGCGCGGTCTAGGACAGTGAAAGTATTCCACAACGAGACTGTTCGTAGGAGCAGGCAGCAATATCTACATTCCCCAGGTGAGAGGTGCATGTTTCAGTTCTGGGTCGCAAACCTACAGCCAAAACATACATACAAGGATATCCTATCCAAGcCACCCCTTTAtctatctctctaggagctgCCTAGACCAGGACAAGCTACACAGATGGGAAAGACAGGAGAAGAGGCAGGGGCAGACGCCAGCATGGCATCTATCGCTGACTACTACGCAGGCAAGAATGTGCTGATCACTGGCGCCACGGGCTTCATGGGCAAGGTGCTGGTGGAGAAACTGCTGCGGTCCTGTCCAGAGGTCCGAACCCTCTACCTCCTGGTCAGGCCCAAGGCTGGACAGTCCATGCAGGAACGGGTCAGCGACATGATGAAGTGCAAGCTGTTTGACCGCGTGAGGGAGGACAACCCAGACTTCCACCAGAAGATAGTTCCTATCAGCAGTGAGTTGACACAGCCTGCCCTGGCCATCAGTCCTGAGGACGTAGAGAGACTGACCTCCTGCGTCAACATCATCTTCCACTGTGCTGCCACCATCCGCTTCGACGAACCCCTCAAACACGCCCTGCAGCTGAATGTGATTGCGACGCAGCAGCTCCTGAGTCTGGCCCAGCAGATGCACCACCTCCAGGCCTTCATCCACATCTCCACAGCCTACGCCAACTGCAACCGCAGGCACATCGACGAGATCATCTACCCACCGCCTGTAGAACCCAAGAAGCTCATCGACTCCCTGGAGTGGATGGAGGACAGCATTGTCCGTGACATCACACCGCGCCTCATCGGGGAGCGCCCCAACACCTACACCTACACCAAAGCCCTGGCAGAGTGCGTGGTTCAGAGGGAGAGCAGCAAGCTCAGCATCGGCATCATCAGACCCTCCATAGTGGGAGCCAGCTGGCAGGAGCCTTTCCCTGGCTGGATCGACAACTTCAATGGACCAAGCGGAGTCTTCATCGCCGCGGGGAAGGGCATCCTGCGCACCATGAGAGCCAACAATGATGCGGTGGCGGACCTCATCCCCGTGGACGTGGTCATCAACCTGACCCTGGCCGCTGGCTGGTACACGGCAGTGCACAGACCCAAAGCAGCGctggtttacaactgcacaacgGGCGGCATCAACCCTTTCCACTGGGGAGAGATCGAGCACCATGTGATGTCCAGCTTCAAGAGGAACcctctggagcaggctttcagAAGGCCCAACGCCAACATCACCTCCAACTACCTGATGAACCAGTATTGGGTCCTGGTCAGCCACAAGTTCCCTGCCCTCATCTACGACCTCTACCTGAGACTGTCTGGACAGAAACCCCAGATGATGCGTATCTTCAACCGGCTGCACAAGGCCATCGGCCTGCTGGAGTACTTCAGCAGTCAGGACTGGGAGTGGAACTCAGAGAACATGAACATGCTGATGAGCCAGCTCAGCCCTGAGGACAGGAAGACATTCAACTTTGACGTGCGTCAGCTGAACTGGCCGGAGTACATCGAGAACTACTGCATAGGCACCAAGAAGTACGTTCTGAATGAAGACATGTCCGACATCCCTGCAGCCAGGCAACACCTCAGGAAGCTGAGGAACATCCGCTACACATTCAACACTCTACTGCTGGTCTTCATCTGGAGGGTGTTCATCGCCCGCTCTCAGATGGCTAGGAACATCTGGTACTTTGTGGTCAGCCTCTGCTTCAAGTTCCTCTCCTACTTCAGGGCCTCCAGCACACTCACCAACTGATGACCAACTGACCGTTGACCAGCTGAACGCCCTGCTCACCACCTCAACCAGACCACACCCCTCAGACCTCCAGCAGCACCCAACCCCACCCCTCAGACCTCCAGCGGCACACAACCCCACTCCTCAACCAGACCTCACCCCTCAGACCTCCAGCAGCACACAACCCCACTCCTCAACCAGACCACACCCCTCAGACCTTCAGCAGCACACAACCCCACTCCTCAACCAGACCTCACCCCTCAGATCTCCAGAAGCACACAACCCCACTCCTCAACCAGACCACACCCCTCAGACCTCCAGCGGCACACAACCCCACTCCTCAACCAGACCTCACCCCTCAGACCTCCAGCAGCACACAACCCCACTCCTCAACCAGACCTCACCCCTCAGATCTCCAGAAGCACACAACCCCACTCCTCAACCAGACCACACCCCTCAGACCTCCAGCAGCACCCAACCCCACTCCTCAACCAGACCTCACCCCTCAGACCTCCAGCGGCACACAACCCCACTCCTCAACCAGACACTGTTCCTTCTGACCCTGTTGTACGTCATACAGTAAAACCACTATGTAAGTGTTATTTCTTTTCTAACTACGGCTTTTCTTAAAGCGACAGATTACATGTGCAACAATAAACTCATTGTATACTCTCCCCACATTTTTGCTCATAGTTTACATCCTCCCCAACCCAGACACAATGTCATAGAAGAGGATTTTTTTGCATACTTGAAATACTGTATGTCaggcctcctctcttcttccatggGCGAAGTGTTTTTACCTTGTATTGGTTTGTACTGACAGAATATTTGGGAACCTGCACTCTGTAGCGAGGCCAGCTAAGGATATCCGAGAGTAACTTCGGTGTTGATCACATTAAAGGCTTTATTCAATCTGTAAAGTTGAAGCGTTACAGACTCTGTGATATAAATTAAAAAAGGTCATTTCCAATTGAGCCAACACATGCAGcttttaccgtgaatgcagtctgcAAAAGCAGGTACATTCCCTTTTGTTTCAATCATgctgtaaagctgaacttctGTGATGTGGATTGAATGGAGCCCACTGGAGACTACTACTGAAGTACTACTAAcatctgacctggttgatgacTACTGAATATTGACATCGGTATGATTGACACAACGCATAAGACTCATTCTTTGTTTTACCGTTTGTCCACTTTTTACCTGTTTTGTACAGCAGTTTATTTTGAAACTAAGTTTACTATTTTTTCATCTTTATAAATAATTGCGTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1966159 lncRNA upstream 40386 21316403 ~ 21316637 (+) True G1716061
TU1966064 lncRNA upstream 189663 21166911 ~ 21167360 (+) True G1715966
TU1966031 lncRNA upstream 217970 21138651 ~ 21139053 (+) False G1715945
TU1966032 lncRNA upstream 217970 21138651 ~ 21139053 (+) False G1715945
TU1966033 lncRNA upstream 217970 21138651 ~ 21139053 (+) False G1715945
TU1966176 lncRNA downstream 9672 21420507 ~ 21423854 (+) True G1716078
TU1965984 lncRNA downstream 40285 21451120 ~ 21452381 (+) True G1715904
TU1965990 lncRNA downstream 139706 21550541 ~ 21553761 (+) True G1715907
TU1966223 lncRNA downstream 143429 21554264 ~ 21554515 (+) True G1716118
TU1965987 lncRNA downstream 180853 21591688 ~ 21593104 (+) True G1715905
XM_036957227.1 mRNA upstream 6471 21087357 ~ 21350552 (+) False LOC110499983
XM_036957228.1 mRNA upstream 6471 21087357 ~ 21350552 (+) False LOC110499983
XM_036957229.1 mRNA upstream 6471 21087357 ~ 21350552 (+) False LOC110499983
XM_036957230.1 mRNA upstream 6471 21087358 ~ 21350552 (+) False LOC110499983
XM_036957231.1 mRNA upstream 6471 21087358 ~ 21350552 (+) False LOC110499983
XM_021577079.2 mRNA downstream 14735 21425570 ~ 21448889 (+) True LOC110499986
XM_036957256.1 mRNA downstream 45010 21455845 ~ 21485720 (+) False LOC110501025
XM_036957257.1 mRNA downstream 45010 21455845 ~ 21485720 (+) False LOC110501025
XM_036957259.1 mRNA downstream 45010 21455845 ~ 21485720 (+) False LOC110501025
XM_036957247.1 mRNA downstream 45011 21455846 ~ 21485720 (+) False LOC110501025
TU1965907 other upstream 356886 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 798272 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 1243132 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 1733109 19602461 ~ 19623914 (+) False G1714090
TU1967360 other downstream 765128 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 1308084 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 1371650 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 1409917 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 1439057 22849892 ~ 22851407 (+) True G1717517

Expression Profile