RNA id: TCONS_00052776


Basic Information

Item Value
RNA id TCONS_00052776
length 1798
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id XLOC_025689
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 47395535 ~ 47409399 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAGCATGCTCCTCAGCAAAGTTGCATCTGGCTCGCCCCTGGACATTTCGATCTGCCTGATTGAGTCCTAATCGGAGCCTGTGAAACATTTCAGACCTTTCACCCCTCGTTATCAAGGAAAACAAAGATTACCAAATGTTCTTCTTTGACCAACACATGGCTCGTACCGCATGGGAATGACATTGATAAGAAATTAGGTGAACAAACATTCAAAAATAGCTGCCCTCATCAATGAAAGTGACGTCTTTGAGATAAGAATCGAATACGATGGAGGATTTCTTCTGCATGTATTCTTCCACCTTATGACGGTGGCGTTAATCTGCTCTGGGAAAAGCTGAACCTCAGCACTGCCAAAATGAGCTGTACGGGATATCAGGACTGTTCTCGCCACGCTCCGTGGCTCATGGCTTCAACTCTGCGTGATGCCAGCTCAATTCCTAATAGAATTAGCTTGGATTAATTGGCTGTTTATATTCAAGAGTTCCAGTCTTGTTCCTTTCCCTGATACGGAGAGCATTGCTCCATTTATCCCAGTAATGAAAGTGGAGAATGCAGTGGCAGCGGTCATTACCGCTCCCCGACCAGAACAATGTGTTCTGACTCCAGCCTGTGAAAGACATTAACTAGGCCGTCTGAGAACACTGATGACTAAATATCTCAGTCTCTTTGCTCCGCAGCTGACTGCAGGGACTGCACTAGGGTCAAAAGCACTGCAACACTGCAAAAAACAACCCTTACCAGTTTCAAAATAGCTCAATGCCCTTGAGGGCGGAAGTGTGATGGGAATCTGATGTGTTGAGGAGATCTGCGGTGTCTGTGTTGAACATAGACACGTACATCACCTCCACACCTGTCTGGCTGGAGCCTGCCAGCCCATACCTGAGAGGACAAACCCACAGAGGTATACACCGCCACACATCAGATCTCAACGCTCCTCTCCGTCATGTCCATATTTGCGCAACAGAAAGGTAGATCACTTGCTGTACGTATCAGCCAGAACATCAAGTGTGAACTATTTACAGTGCTAAGTGAAGTATCTCCAAACATCTACGGAGGCCCTCAGCATTTCATTGAATTCAGTATATTATGAAAACAGCTTCAGAATTcatggaaatgtgttgaaattgtCGGTTACACTTTGTTCAGATTTTTCCCTTTAAATCGATTATATAAATACAGTACATTTGTAGCTATCACCTACTGGATTATTGATAGAGTTTTGGTCAACTGAATCAGATCGGGTAAGCAAAATGAGTTGAGGTACAGTACTTGGAAAGTTACTTTTTCCATGcagtttattattacattattaatactGTAATTGATAATTGTATTGAGGATGTAATGTATTAAAACCAAATAGACCACTTTCATGGTATTCGACTGTGTTAGTGTCCTTGGGAAGGGTAGTGCATTCTGTGATGGCACTCAATGCTGAAAAGCACATAGAGATTTTGTAGCACAATATGCTTgctggttgccatacctgatggaTAAAAGTCATCATTTGTCGTCAATATGACATCGGTTTAAGGTGTTGGCgtgatgttgaattttggtcactttccaacacctgcctaaaatcaatcaaatatcaacgtcattttatTGGAcagcaaaataacattgtccttagatgcctAATATTAGCCTaacctaacctaatattaacgtctaatgaatTTGCAAAGTCCAGCTGCGGAGAAAGAGGATAGAGGTAATTCattggcctgtctgcagtcccgacctgtctccaatagggAATGGGTGGCACATTTTGACGTAAAAACTGCATCA

Function

GO:

id name namespace
GO:0071840 cellular component organization or biogenesis biological_process
GO:0001501 skeletal system development biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0016043 cellular component organization biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0050840 extracellular matrix binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052370 lncRNA upstream 197556 47175094 ~ 47198612 (+) True XLOC_025686
TCONS_00052771 lncRNA upstream 286695 47107770 ~ 47109473 (+) True XLOC_025685
TCONS_00052769 lncRNA upstream 557530 46834857 ~ 46838638 (+) False XLOC_025684
TCONS_00052770 lncRNA upstream 557530 46837552 ~ 46838638 (+) True XLOC_025684
TCONS_00052768 lncRNA upstream 593121 46798512 ~ 46803047 (+) True XLOC_025683
TCONS_00052778 lncRNA downstream 94609 47494522 ~ 47498343 (+) False XLOC_025691
TCONS_00052777 lncRNA downstream 94609 47494522 ~ 47498343 (+) True XLOC_025691
TCONS_00052779 lncRNA downstream 640425 48040338 ~ 48041913 (+) True XLOC_025693
TCONS_00052372 lncRNA downstream 897593 48297506 ~ 48315584 (+) True XLOC_025696
TCONS_00052780 lncRNA downstream 1039153 48439066 ~ 48442896 (+) True XLOC_025697
TCONS_00050560 mRNA upstream 8791 47322494 ~ 47387377 (+) True XLOC_025688
TCONS_00050559 mRNA upstream 137724 47245764 ~ 47258444 (+) True XLOC_025687
TCONS_00050557 mRNA upstream 183053 47130912 ~ 47213115 (+) False XLOC_025686
TCONS_00050558 mRNA upstream 183560 47131112 ~ 47212608 (+) False XLOC_025686
TCONS_00050556 mRNA upstream 190440 47130912 ~ 47205728 (+) False XLOC_025686
TCONS_00050562 mRNA downstream 152440 47552353 ~ 47554777 (+) True XLOC_025692
TCONS_00050563 mRNA downstream 806556 48206469 ~ 48215187 (+) True XLOC_025694
TCONS_00050564 mRNA downstream 821500 48221413 ~ 48229972 (+) True XLOC_025695
TCONS_00050565 mRNA downstream 834532 48234445 ~ 48327160 (+) False XLOC_025696
TCONS_00050566 mRNA downstream 1073433 48473346 ~ 48489887 (+) True XLOC_025699
TCONS_00050528 other upstream 1760982 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050515 other upstream 2508015 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050507 other upstream 3679253 43716827 ~ 43716915 (+) True XLOC_025656
TCONS_00050506 other upstream 3681385 43714699 ~ 43714783 (+) True XLOC_025655
TCONS_00050499 other upstream 4011990 43373895 ~ 43384178 (+) False XLOC_025650
TCONS_00050561 other downstream 60575 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050573 other downstream 1732428 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050578 other downstream 2669682 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050613 other downstream 5220145 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050620 other downstream 5428999 52828912 ~ 52829006 (+) True XLOC_025751

Expression Profile

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