RNA id: XM_036957250.1


Basic Information

Item Value
RNA id XM_036957250.1
length 6971
RNA type mRNA
GC content 0.59
exon number 22
gene id LOC110501025
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21455845 ~ 21485720 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatattctagaACCAACTCGTTGCAACTGAACTAACAAATCCTGCATAGTGGCATTATAGCGGCAAGATTTGGACTACAGAAACAAAACTACAGAACAGAACGGACGCGTGAACGCGCATGTAGCCATCTCATTTCACGGCGCCCCTGTAATCTTGGCCTGTGGACCCCGGAGAGTGTAGGGGCGGGGCTCGGGTTAGGGGTTGATGGGCTGGAGGAGGCGGAGTCACGGCAGTCCTGCCAGGGCCGCCATTTTTGCAAAGGGAAAAGAGACAGGGTTGAGGGGATCTAATTTCTAACAGTCGGCGTAGGTAGGACACAATTTTAACGGTTCGGAACTGACTGTCATTATTGGGTTCCAATAATTACCAACGAAAACTAATTACAGTAGGGGGAGTCTCTAAAAAAGATTGCTATCAGTGTAAATATTTTTAAACCTTATAGAGCCGCAGTGTGGAGTGAAGTAGCTATTGTTTTGGTTGTGTAGAGAGCGAGGCTCTAGCGACGGGGGTCTCACCCAGGTCGCTGTTTCTTTATTCAGGGTATCTACAGTGGACTTTAACTGCCTTGTGGATGCACTTAGATGTCTGCAATGAGTGCTGTGGCTGGCATGCCTCAGTGTTTTGGACTCCCATGCTCTGGACTCAGTAGGACAAGAATTGATCAGCAAAGAACGTCATGAGCATAGTGATCCCTGTAGGGGTGGACACAGCAGACACCTCATACCTGGAAATGGCTGCAGGCTCAGAaCCAGAATCGGTAGAGGCCAGCCCTGTGGTGGTGGAGAAGTCCAGCTACCCGCACCAGATCTACAGCATTAGCTCTCACCACTCCCACAGTTACATTGGGCTGCCCTACGCCGACCACAACTATGGGGCGCGCCccccgcccactcccccggcctcccctcccccctccatgcTGATCCGTCCAGGCGAGGGGCTGTTTGTGCCGGGGGGCCTGCAGGACGAGGCTTCCAGGGGCACCACACTCAGCACCTCGGAGGACGGCAGCTACGGGGCCGACATCACCCGCTGCATCTGTGGCTTCACCCACGACGACGGCTACATGATCTGCTGCGACAAGTGCAGTGTGTGGCAGCACATAGACTGCATGGGGATCGACAGGCAGCACATTCCTGAGACGTACCTGTGTGAGCGCTGCCAGCCGCGCATCCTGGACAGAGACCGGGCCATCGTGCTGCAGACCCGCAAGAGGGAGAACATGTCCGGTGAGTGGAGAGATGGCATACCGGTATGTATCTCTGCAGACGGGGACACCAGTGCCACAGAGAGTGGGGACGAGGTGCCGCTGGAGTTGTACACGGCCTTCCAGCACACGCCCACCAGCATCACACTCACCACCGGCCGCCTGGCGGGCAACAAGCAGGCCGACAAGAAACGCAAGAGGAGCGGAGACAAGGAGCCCGTCGCCACGTCAGCCCGAGCCAAGAAGGCGTTCCGTGAGGGCTCCAGGAAGTCCTCCAGAGTGAAGGGTGGCTCTCCAGAAATGGAGCCCGGAGAGCACCCGTCTCTGTGGGAGAACAAGATGAAGGCTTGGATGGAGGCCTACGAGGATGCCGGCAGCAACCAGTACAGCGAGGACGTCCAGATCCTGCTCCGCGTCAAGGAGGCCGGCGACGGCAAGACCCTggcctacaacacacacacagccaccttCAAACCGCCCGTGGAGagCCAGGTTCAGAAGAACAAGAAGATCCTGAAGGCAGTGAGGGATTTGGCTCCAGACTCCCTCATCATAGAGTACAGGGGCAAGTTCATGCTGCGACAGCAGTTTGAGGCCAACGGATGCTTCTTCAAGAGGCCATACCCCTTTGTGTTGTTCTACTCAAAGTTTGACGGGCTGGAGATGTGTGTGGACGCCCGCAGCTTTGGCAATGAGGCCCGCTTCATCCGACGCTCCTGCACCCCCAACTCTGAGGTGCGTCATGTATTAGAGGATGGTATGCTCCATTTGTACATTTACTCTTTGAGGTCCATCAGCAAAGGCACTGAGATCACCATAGGCTTCGACTATGACTATGGCTGCTGtaAATACAAGGTGGACTGTGCATGTGTGAGGGGGAACCCAGAGTGCCCGGTGCTGAAGTACAACCTGGAGCCCACCGAGAACCTGGAGGCCAGCAGCCGCCGGCGGGGCCGCAAGGACAAGGAGCCCATGATGCAGCGAGGGGACCACCTGGACCTGGGCCAGAACCAGAACATGACCCTGGACTGTGACGGCAGGACCAAGGGTCTGGGGGCCGACGGCAAGCAGAGGAAGCTATCGCCCCTCCGCCTCTCCATCTCCAACAACCAGGATCCTACAGAGTTAGAGGGTGTAGAAGACCAACCTGATAACTCCGTTAGCAGTGAAGTAGAGATGGAGTCAGAGGAGACcattgcagagagaaagaggaagatgGCCAGCCCAGCGGAGGAGTCCCATCTGCAAGGCGTGGGGGCCTCCAGCTGTCTGGGACTGAGTAAACCGGAGaCCCGtgaagagaggaagatggaggccATCCTGCAGGCCTTTGCCCGcatggagaagagggagaagaggcggGAGCAGGCCCTGGAGAAGATTGGCACCAAGTCAGAGGGGGGCATCAAGGAGGAGCCCCCTGCCACCCCCGAGGCCGACATGCAGTCTCCTGGTATCATGACGCCCCTGCTAGAGGTGAAGGAGGAGCCGGGTCTCAACAAGCCCACGCCGGCCAAGCTGCGAGGCAGCAAGCAGAGGAAGAGCTTCTCGCGGAGCCGCACCCACATTGGGCAGCAGCGGCGGCGAGCGCGCACCATCAGCACCTGCTCTGACATACCTCCCGGCTCACCTGGGGAACTCCTGGACCCCCTGGCCAATGACGGCCCAGACGTAGAGGCCTCCAGGGACCCCGAGCCAGAGGCCCTCTCCTCCCATGCCCCCGACACCAGCCCCCCTTACAGTGGCTCCCCGGCCCCTGACAGAAACCGCTCCGGGCAGAAGTACCCCAAAACTAAAAAGcactTAGTGAGTGAGTGGTGCGTCGACAAGCAGGAGCGGTCATTGCGGACCCCAGAGCCGGCCCCGGAGAGGCCCCTGAGGATCAGCAGCGACCCGGAGGTGCTGGCCACCCAGCTCAACGCCCTGCCCGGCATGGGCCCCAGCCCGCACGTCTACAGCACGCCCAAACACTACGTCCGCTTCTCCTCGCCCTTCCTGGCCAACCGCAGCCCCACCACCCCTGGGGTGCCCACCGGACGCCGGCGTTCCCGCGAGCTGCCCGACACGCCGCCCACCTCAGGCTCCTGCAAGAAGCGCTGGCTGAAGCAGGCTCTAGAGGAGGagaccaccacccctccacccagCAGCGGCCGGCCCACCCTGGTCATGCCTAGCGAGGGCCCTCTCAGCCCTCCTATCAACGGGGACTCTGACAGCCCCCTCCCCTACAACGGCAGCTGCACCTTGCCAGAGTTGCCCACTCCTCTGAAGAAGCGACGCCTGGGTCTGTGTCCACTGGACGCCTGCATGTCAGAGAGCTCCACCCCCTACGGCTCTCCCTGCGCAACGCCAACCCGGGCCGACCTATCAGAGACGCCGGGTACACCCCTGCTGCTGGCCACGCCACCCCGCGTCACCCGTATGGAGGAGCCGAGCCCCGAAGCTCTACCAagcactcctacacacacactcagtgccCCGCAGGAAAGCGAGTCTTCCCTGGACAGCTCACCAGAGTGCAGTCGCAGACCCAGCCCCCAAGAGGCTGAGCGGCCACCTTCGCTGCTCTCCTCCCCCTGTGTAGCGGTCAGGGCCCCCAGTCTGGAGGTGTTGCCCCCCCACGAGGCCAAGATCAGTGCCCCCCTGAGCCCCCAGCCCCCCATCGCCGAGTCCCAGGactgtgggggagaggaggggccaGAGACCGGGGCTGAGGGCAGCAGCGAGGCCCCCCCCACAGACCCagcctcttcctccctcctctccccctggatGAAGAGTCCAGAGAGAGTGGGTCTGTCAGGGCCAGGGGGTCTGTCCTTCTCCCCCATCAACTCTAACCTGAGGGACCTTACCCCCTCACACACCCTGGAGCCCATCTTGGCCTTCAGGCCGGAGGCGGTGGCTGTGGCTGGTGTTGTGACTGTACCAGTACCCTTGGCAGCAGGACCCTTCACAGAGGCTGCAGGGTCTCTCTTCTACCCCTGCCCTGAGGAGGGGGGAACGCTGGCCTTTTCTCGCTCACTAAGTGGAGACGGCACCGGAGAGGGAGGGTCAGGACAGAATCCCCCACAGAAGAAAAAGgtgtctTTGCTGGAGTACAGGAAACGTCAGCGCGAGGCGCGGCGCAGCGGCTCCAAAATGGAATGCGGCTCGCCTGTCTCTACAACACCTACCCTGGTGGAGATGTTCCCTCTGCCCATGGAGACCACCCAAGAGCCTCCACCCCTGGCTCCGGCCCAAGCTCCAGTGGCCCCTGCTGCAGTGGCCCCCACCCCGCCTGAGCCAAATACCCCTCAGCCCAGCGAGGACACAGAGCCCCCTGTcgagggggagagtgatgggggagagggacagtggaCCTCGTCCACCTCGGTGGAGCAGGCAAGAGAGCGTGGCTACCACAGAGCCCTGTCGCTTAGTGACCACAGCAAGGacaaagATGGAGAGACCGAGGGCAGTGAGGCCCCAGTCAGAGATGGTTCATCTCCTAGCCTGCAGAGGACCCCAACCCACACTcCGTGTTCTCCTGGCCCCAGCAGCCCGTCCCAGCCTGGCAGTTGCccagtgaaggaggaggagagtgacagCCGGCCTCGGACCCCCTCCCAGGCCACCCCACAGCAGCCCAGCAAGCCTGCCGTACCCAAGACATCCCCCCTGACCCCCACCAAGCTACACCCTGCTGCCCCCTCACTCCTCCACTCGCCCAACCCCCAGGCTCAGGGCTCCCCTTACCGCAGCCAGAGGGCCTTCCTCTTTGCTCCTCCTCAGTCCCAGCCACAGGCTCAACCAGGGCTGCCCCTCTTCTCCCAGTACAGCCCACAGTCcgctccacctccccctcctccaccagcACCTCCAGCCTCAGCGGCCTACTTCCCCAGCCAGTCAGCCTCCACCGTGGGATCCTTCCCTGGGTTCAAGCCTTCCGTGACGTCCCCATTCCCCCCTGGTGCCCAGCCCCTCCTGCAGACTCTTCCTCCCCACACCCTGCACTACCAGAGCTCTACcactcccccccctcctccccctcccccaccacaaCACCCTGGGCCCAGCCCGGCCCTGCTACACGTTAACCTGCAGCCTCCTCCTGTCCAGCAGCACCAGCTCCTCCTGACCACAGCCccccagtcctccctccctcctcctccgccCCCTCCCCCACAGGGCCAGACCCACCAGCTGCAGCAGCCCAGTGCCAGCACCCTCCTGTCACTCAACCAGGGCTTGCCTCttcctccacccccaccccctcctcctgcctcctccacCGGTGTCCCCATGCAAGTGCAGGCCCCTCACCACTTTCAGAACTTGGGGGGCTTTCCAACCCCGCTGGTGCCCCCGCTGGTGCCCCCCTCCACCTATCCCCCGCCCCACCAGCAGACTGGactgcccccccctcctccccctccccagcaGCAAACTCAGCCGGCCCAGGCCGTGCCCACCGCCACTCAGATGCCCAGCGGAACACGCGGGGCCACTGCGTCCCCCTCCCCCTTTCACAACGCTGGGTACCTGGGCACGGGGTGGCACTGACTGCCTCCATGCAGGCCTCCCCCTTGGCCCTGCCAGCCCCTGTGAACTCACTCTGAGAGGAGCTTGACGACAGACCGACAGACCGCGGAACACAACAAGCAACAAAAGCTGTAAATATTTTCTATGTACCTGAACACATGGCCAATGGAAAAACAGGAGAACGTGGGATAAAGGGGTGCTTTTTAAAGGACAAACTGAAAACAAGGACCGTGAAACAATCTTATTAAGAGACTTTGTGTTTGAAATGAAGATGGACTATTCCCCCGGTgctcatcccactctctctctctccgacgtCCCTCCCTGCGTTTTGTTTTGAATTTCCCTCCTGTAGCGGAGAGAGTGCTTGACCGTCTGACCGTCTCTGTCTGTTTTGGACTTCTATTGTAAGGTCCCGCACTTTCTGTATCAATGTACATTCCAGCCTCCACCCCCCTTCGTCAGTTAGTCCGCCTTTCACTTCTACTTCTCTTTGTCTATTGTCTGCTCTTCTACACCGTTTATTCCTTTTATCTAGTGGCTCATTATAGCAAACAGAAAGCTTTTCGTAAAGATAAAAAAATacagaattattatttttattccTCTGTGTAACAAATATCTGTGCACCGCTGCAGTGATTCAGAAAATGCTGTTCTGGGAGCCCGCTTCACTGCCCCAGGAGACtgcactcgtgtgtgtgtgtgtgtgtgtgaggaggtgtatggactgtatgtgtgtgtctgtctgtcctgtgtggGAGAAAGGGAAGTGATAGACAGTAAGAGTGATGGCGTGAAACGAGTGCAGTAGTCCTCTGTGGTAGCCAGAGTGAGGTCTCACCCGTAGGTAGGACGTTAGCGGTTTATTTTTGAATATCAATGGTTATTTGTAGAAATTGTAATTTAATGTATAGGTGGTTCCTCCAGCTTTCTCCGGAAACAGGTTGTATATATTTGCTTCTTTTCTTTCCTATGCTTGTACAATTGGCTCCCATCCCATTTTGGAATATGGTTGTAAATACGAGCGCTCTTCTTGGCAAAGATGAATGTTTCTGTGACCGTAGCACTTTTTTCTTTTGTTCTTCCACTCTGGACTATTCAGTGTAGTCTTTTTTTattatttgtgtgtgcgtgtgagtgtatgTTTGtgcagaggagagagactcaAACACTGCACTGGTTGGCTATTTTCATGGTTCCTTATAATAAATCACTGTAATGACAGTTTTATACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1965984 lncRNA upstream 3467 21451120 ~ 21452381 (+) True G1715904
TU1966176 lncRNA upstream 31994 21420507 ~ 21423854 (+) True G1716078
TU1966159 lncRNA upstream 139211 21316403 ~ 21316637 (+) True G1716061
TU1966064 lncRNA upstream 288488 21166911 ~ 21167360 (+) True G1715966
TU1966034 lncRNA upstream 316795 21138651 ~ 21139053 (+) True G1715945
TU1965990 lncRNA downstream 64821 21550541 ~ 21553761 (+) True G1715907
TU1966223 lncRNA downstream 68544 21554264 ~ 21554515 (+) True G1716118
TU1965987 lncRNA downstream 105968 21591688 ~ 21593104 (+) True G1715905
TU1966230 lncRNA downstream 111176 21596896 ~ 21597103 (+) True G1716125
TU1966259 lncRNA downstream 159908 21645628 ~ 21645860 (+) True G1716154
XM_021577079.2 mRNA upstream 6959 21425570 ~ 21448889 (+) True LOC110499986
XM_036957242.1 mRNA upstream 45013 21357023 ~ 21410835 (+) False LOC110499985
XM_036957241.1 mRNA upstream 45013 21357024 ~ 21410835 (+) True LOC110499985
XM_036957233.1 mRNA upstream 105296 21158371 ~ 21350552 (+) False LOC110499983
XM_021577080.2 mRNA downstream 2702 21488422 ~ 21491605 (+) True LOC110499987
XM_021577084.2 mRNA downstream 50240 21535960 ~ 21546505 (+) True LOC110499992
XM_036957264.1 mRNA downstream 72821 21558541 ~ 21582813 (+) False LOC110499994
XM_036957263.1 mRNA downstream 72822 21558542 ~ 21582813 (+) False LOC110499994
XM_036957265.1 mRNA downstream 72822 21558542 ~ 21582813 (+) True LOC110499994
TU1965907 other upstream 455711 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 897097 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 1341957 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 1831934 19602461 ~ 19623914 (+) False G1714090
TU1967360 other downstream 690243 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 1233199 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 1296765 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 1335032 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 1364172 22849892 ~ 22851407 (+) True G1717517

Expression Profile