RNA id: TCONS_00004792


Basic Information

Item Value
RNA id TCONS_00004792
length 829
lncRNA type retained_intron
GC content 0.48
exon number 8
gene id XLOC_002576
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7623698 ~ 7636340 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTGTGAATGCTGACATGTCTAACAGATGTGTTGTCCTCTGTGTTTTACTGTCAGGAGTTTGCTTCATTTCGTGGAAACACTCGATAATCGGTGTTAACGATGCTCTGAAATTGGCTGGACGCGGATTCATATTTCTAGGCATCTGTACATGGCTGATTTCCATATTCCCGAGGCTGAAATTTTTCTTCTTTCCAGTGACTCAAGAGCTCACAGACATTTGTCTTTTTTGCAGGCCCAACACCTGAATCCAGCAGACTGAAAGAAGAGCAAGTTAGAAGAACTCAGCAAGATCTACAAAATGACAAGATGTCGGACTATGCTGAAAAGGTGCTAAAGCCAAGACAGGACTCATTACTCCAGCAGAAAACAGAACGATACTATCGTATGACAGGAGAAACATGGAAACTAAGCCCGGGGCTTCCTGTCGGGGGTGATGAGGATAAGATATGTCATGCGGTGGATGTAGACGAGTCTCCTAATCAGGGAGCCAGAAGGAGACGAAAGCCGATGCAGACTGTTACTCAAGATCCTGTCCAAGAGGAAGTGCCCAAGCAGAAGAGGGTCATAGTTTTGCCTGACGAGCCATCAGTGGACACTGAAGGGGCAGTAAAAATAGCCCTAAGATGTCCGGGCAGAAGAGCAATCCACAGGAGATTCCTCAAAACCTGGAGCTCTCAGCTCCTGCTGGAGTGGATGATGAAGACAGGATACCCTCCAGCCCTCTACACGCTGTACATGTCATACCCCAGGACGGAAGTGCAGACGGCTGCAGACATGAGCCTGGAGGAGGCTGGcatccacacagacacactgCTGAATGTGGAGGA

Function

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

ZFIN:

id description
ZDB-GENE-050522-266 Predicted to act upstream of or within ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human UBXN8 (UBX domain protein 8).

Ensembl:

ensembl_id ENSDART00000167954

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005996 lncRNA downstream 370190 7238244 ~ 7253898 (-) True XLOC_002572
TCONS_00005995 lncRNA downstream 562551 7050325 ~ 7061537 (-) True XLOC_002571
TCONS_00004778 lncRNA downstream 792806 6786508 ~ 6831282 (-) True XLOC_002568
TCONS_00005994 lncRNA downstream 928756 6693514 ~ 6695332 (-) False XLOC_002565
TCONS_00005993 lncRNA downstream 1013023 6610157 ~ 6611065 (-) True XLOC_002561
TCONS_00004803 lncRNA upstream 143315 7779638 ~ 7782022 (-) True XLOC_002582
TCONS_00004805 lncRNA upstream 174341 7810664 ~ 7811388 (-) False XLOC_002583
TCONS_00004806 lncRNA upstream 174341 7810664 ~ 7811754 (-) False XLOC_002583
TCONS_00004808 lncRNA upstream 178321 7814644 ~ 7820475 (-) False XLOC_002583
TCONS_00004807 lncRNA upstream 178321 7814644 ~ 7821542 (-) True XLOC_002583
TCONS_00004787 mRNA downstream 68428 7483545 ~ 7555660 (-) False XLOC_002574
TCONS_00004789 mRNA downstream 68762 7483723 ~ 7555326 (-) False XLOC_002574
TCONS_00004788 mRNA downstream 68762 7483723 ~ 7555326 (-) True XLOC_002574
TCONS_00004783 mRNA downstream 151729 7284121 ~ 7472359 (-) False XLOC_002573
TCONS_00004782 mRNA downstream 151729 7284121 ~ 7472359 (-) False XLOC_002573
TCONS_00004793 mRNA upstream 16861 7653184 ~ 7671219 (-) False XLOC_002577
TCONS_00004794 mRNA upstream 16980 7653303 ~ 7666810 (-) True XLOC_002577
TCONS_00004795 mRNA upstream 37123 7673446 ~ 7702029 (-) True XLOC_002578
TCONS_00004796 mRNA upstream 90958 7727281 ~ 7734939 (-) True XLOC_002579
TCONS_00004797 mRNA upstream 102217 7738540 ~ 7756871 (-) False XLOC_002580
TCONS_00004790 other downstream 111965 7512008 ~ 7512123 (-) True XLOC_002575
TCONS_00004786 other downstream 271978 7290947 ~ 7352110 (-) True XLOC_002573
TCONS_00004780 other downstream 614598 7009374 ~ 7009490 (-) True XLOC_002570
TCONS_00004775 other downstream 798966 6786329 ~ 6825122 (-) False XLOC_002568
TCONS_00004776 other downstream 807322 6786333 ~ 6816766 (-) False XLOC_002568
TCONS_00004811 other upstream 234304 7870627 ~ 7892684 (-) False XLOC_002585
TCONS_00004813 other upstream 245006 7881329 ~ 7891866 (-) True XLOC_002585
TCONS_00004819 other upstream 293448 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004848 other upstream 1039567 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004855 other upstream 1380398 9016721 ~ 9016837 (-) True XLOC_002609

Expression Profile

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