RNA id: TU1966263


Basic Information

Item Value
RNA id TU1966263
length 1860
lncRNA type sense_over
GC content 0.46
exon number 3
gene id LOC110499997
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21650654 ~ 21869745 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGACATCCGATTGCAGGTTTTGACCAGAGTTCCTCTCTAACACTCTGTCCCCAGTGTAATCGAGCTGCCTTCCTGTATCTGCCTCTATCTGTGGTCCCTGGTCTGTGGTGGTGATGACATTAACAGACTTGTTCCTGTGCGAGGTGTGATTCACTCAAAATGGCCACGTGCACTCCTCCTCTGAGTGTGCGATGCAATGTGCCTTGGCTTTGCTAGCTGACATTTTGACTAACCTCGTTCCcgtgtgtggtgcgtgtgtgtgcagtgtgttgtaTCCACAGTATGGTCTACTGTTCTCCTAGCCCTTATCAACTGGTTTAGAGTCCGTTTTGTTTGTCTCTCTCATTTGTTTGTCCCTCTCACAGTGGGCAATGGGAGCTGATCCTGTGTCAGTTGTTATGGGCATAAATTGGCCCCTTAGCAGTGCAGCGTCTGGACAGCTCTACAGTGAGGACCTACTCCTgctgagggaggagaagagagactgtAAGCTGtccagatactgtatgtagagaagGTCTTACTGTACCTTGGAGCTGCTGGACGGGTCCTCCTGCCTGGAACAAACATTCTGACGAGACGTACTGCCAAGAAGCACCCCCCTATCTACCCTCCCACCCAACCTACCcccgaaaaagagagagagggggggggggggggtgcctccTGGGTGCCTCCTGCCAATCCGCCCCCCCTCTGCACTTAGGAGTCAAGGCCCCCTGAAACCTGGGCAGCAGCTGCCGGTGCTACTTTCCTTCCGTCTGTCCTGTTGTCACCGTTTCTACCTTTTACATGTACAATAACTTGTTGAAGCATAATGTACTGTGTATTTCTTCTACCAGGAGATGTGTAGGTTATCTGTAAATGAATATAAATATgactttttttaatatatatatataaatatatacacatctatattacaaaaaaaaaaagatattcaGAGTTTGTgcaaataacccccccccccccttcccattTCAAGTCCATGACCTTGGTTAAACTATGCTGCTCTTTGAATATTTCTCCATCATTCCCTGAGAGACCATTTTGTACATAGTTATTTTCCATTGTGCTGATAAATTTGTGTTTTCACCTTGGAGAGACTGTCCATCTGGTCCGCACGTGACCTCCCCCCCAGCTGGTAAAGCCTGCCCTCTAGTGGCGTGTACAGCCCCATGTATCTGAGTCACCAGCCACAGCCCCTCACCTCACAATCATGACGGAGCCCATCTCATAGCAAAGCATTCTGGGAGGACACAGAAACGCACTGTGACGTCTACTGAGGATGTGACAAGCACTTTGATACAACCACAGAAACTGTGGACTACAGCCACAGACTAAAAGATAGACTCCACTCTGAAGCTACTCAGCAGGAACATTCTTCATCAGATGATCTCACTCACCTACAGTACCTTGACCATAAAGCCATACATGAATAAACTCAAGCTGGACTTTTTTTATTTTGCCGTGGGGTCCGACTCAGCATCGCTGAGAAATAACTGAAAGACAGACTGCTTAACTCAGTGTGCGTAGAGTGTATATGAACATGTCGAAGTGAGGTGAATTTTAATGACAAACCTGTTGCTTGCTGTGACATTGGTGTAACTGTTAACTCTTTGTTTTTGTCTGAGTTGCCAGGGAAACCTATTGTACAGCCCTCCTACCTGTCTTTGAGTTATTTCTGCTGGAGTACTCGATCAAGTTTGACCTTTTTGTTGACTTTTACATCCTCGATTTGCACAAACAAAGAATCATTTTATTTTGTGTCCATTTTTTATTCATTACTAATTGTATTTTGGTCAAAACTAAGTGGTGATCAAACAAATTTTCATTGCCAATAAAAAAATACTGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1966395 lncRNA upstream 23295 21841281 ~ 21843712 (+) True G1716270
TU1966391 lncRNA upstream 27947 21836200 ~ 21839060 (+) False G1716267
TU1966392 lncRNA upstream 27947 21836988 ~ 21839060 (+) True G1716267
TU1966259 lncRNA upstream 221147 21645628 ~ 21645860 (+) True G1716154
TU1966230 lncRNA upstream 269904 21596896 ~ 21597103 (+) True G1716125
TU1967055 lncRNA downstream 2382 21872120 ~ 21872339 (+) True G1716881
TU1967057 lncRNA downstream 6566 21876304 ~ 21876625 (+) True G1716883
TU1967059 lncRNA downstream 8136 21877874 ~ 21878169 (+) True G1716885
TU1967062 lncRNA downstream 10252 21879990 ~ 21880232 (+) True G1716888
TU1967072 lncRNA downstream 20780 21890518 ~ 21890814 (+) True G1716898
XM_036957278.1 mRNA upstream 11059 21850946 ~ 21855948 (+) True LOC118942910
XM_021577088.2 mRNA upstream 275334 21582932 ~ 21591673 (+) False LOC110499995
XM_036957267.1 mRNA upstream 275334 21583426 ~ 21591673 (+) False LOC110499995
XM_036957266.1 mRNA upstream 275334 21583720 ~ 21591673 (+) True LOC110499995
XM_036957263.1 mRNA upstream 284194 21558542 ~ 21582813 (+) False LOC110499994
XM_021577094.2 mRNA downstream 50779 21920517 ~ 21948205 (+) False LOC110499998
XM_021577092.2 mRNA downstream 50780 21920518 ~ 21948205 (+) False LOC110499998
XM_021577093.2 mRNA downstream 50780 21920518 ~ 21948205 (+) True LOC110499998
XM_021577099.2 mRNA downstream 121480 21991218 ~ 22007807 (+) False LOC100653451
XM_036957280.1 mRNA downstream 121480 21991218 ~ 22007807 (+) True LOC100653451
TU1965907 other upstream 866870 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 1308256 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 1753116 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 2243093 19602461 ~ 19623914 (+) False G1714090
TU1967360 other downstream 306225 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 849181 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 912747 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 951014 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 980154 22849892 ~ 22851407 (+) True G1717517

Expression Profile