RNA id: XM_021577093.2


Basic Information

Item Value
RNA id XM_021577093.2
length 2175
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110499998
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 21920517 ~ 21948205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCGACGGGCTCTGTGCTCTCACTCGCCCGTTTAGCTTGAGTTGCTTCTGATGCTGCAGCTACCGTAGTCGCTATATCTCCCCATAACAGCAGTCATGGCGACAGAGGTCCAACCGCTCACTCTGGATCGAGatgtGGCCAGAGCGATTGAGCTGCTGGAGAAGCTACAGGAGTCCGGGGACGTCCCGGGTCACAAGCTGCAGTCCCTGAAGTTGGTGTTGCAGAGTGAGTTCTGCACAGCCATTAGAGAGgtgTACCAGTACATGCATGAAACAATCACAGTCAATGGCTGTCCGGAGTACCAGGCACGGGCTACAGCGAAGgccaCAGTTGCAGCCTTTGCGGCCAGCGAGGGTCACTCTCACCCCCGAGTGGTAGAGCTGCCCAAGACGGAGGAGGGGCTGGGCTTCAACGTGATGGGCGGCAAGGAGCAGAACTCTCCCATCTATATCTCCCGCATCATCCCAGGGGGCTTGGCTGAGAGGCACGGGGGCCTGAAGCGAGGGGACCAGCTCCTGTCTGTCAATGGTGTGAGTGTGGAGGGGGAGCACCACGAGAAGGCAGTGGAGCTTCTGAAGGCAGCCAAGGACAGTGTGAAGCTGGTGGTACGCTACACGCCCAAGgtcctggaggagatggaggCGCGCTTCGAGAAGCTCCGCACGGCCCGCCGCcgccagcagcagcagctcctCATGCAGGCCCAGCAGCAGCAGAACCTCACTACCCAGCAGAACCATATGTCGTAGGCTGTTCCAAAAGAAGAAGTAGTGAAGGACACTGAAAGCAAGGTTCTAAGTCCATATCTGTGTGGAGGATCCCGAAGGAACCACCTGGTAGAGGAGAATATGATACTGTTAAGCAGTGAAGACTCTCCCTCGCCCTTCAATGTACTACCAACAGAAGGAAGCAAAACTGAATGATATGTGTTCTGAAATGTAAACAACGGTGCTTGTGACTTGAGACATTGGAGGCAAGCACTGAAACCCATCCTTTTGACTTTTATTTTGTTTGTGTTCATTTGAAGTTGTCCTCTAACAGTTGAAAGTTGTGACCCTCCTCAATGTTCCTCCTTGTCATTTGTGATAGTTTATTTTTGTTATCTGTTTTGAATTCATTTCACTTGTTTCCTGACTTTGGTTTTGCTATAGCTTTGTACAGTGATATTGTTTCTTCTATGGgagcttgtgtctgtgtgtgaatgaACATTGCTTTTTTTGTGTCAAACTTGTCCTGCTTTGGATAAATGTGAACTCTTTTTTTACCTTATATATTGCAGTGAGAAAATATTTTGTATGGAAACTTGTAGATTTTAGCAATAACAGACTTTCGTTGGTTTTACATTTCACATAAAAGTAACGATTAGAGATATATAGTATGTGGGAAAGATACAAAAGTGAACCATGTAAAACTCGGTCAACTGTATCTTATGCACTGTGTGTCATAAGGCAGCTTCTGCCATTAAAATCAAATGGCTGTTAAAAGAGGAAGAGACTGTGGAATGTTCTAGTCGTCTTATCAATAAGGGACCTCTGTTTTAAACTCTCTCCTTCAACCCTCTACCTATCGTCTGACGTAGTATTCTCATGACAATTAACCGTCTTTAAGTATAACAAGTTGCACTGTGGATTCATTCAAAGCTATTAGAAAACCAGTTGATGGTCAAGACTGATCAAAAGGAGTCTTGTATCTGTAGTACTGTCAGACAAACAATACATTGGATGGTTTTCCCAGTAGCAAACTCTAGTATGTATGTTCTATATAGGCCTAGTTCCTTTGTGGGTGGGTATTGAAGTAGTGCAAGATCATTTGACAGGCATACTGTGTGCAATGTGCCATCCTGATAGTCCAACCAGATTGGGCTTTGAACGTGTTTTGTCCCTCAACTTTTGAGCAGTTCATCTTGCCTCTGACAGATCCCTTTTGTACATTTACTTATTCTCTTTCTAATTGACGATTTTTTTAGGCTGGATGTACTGTACTTCCTGATTCGACGTACTGTACTTCCTGATTCGATCTACTGTACTTCCTGATTCGACGTACTGTACTCCCTGATTTGGCGTACTGTACTTCCTGATTGTACAGAAAAAAAAGACAACACCAGGTGATATGCAATTGTTATACATATTATATttgtataaataaatatatgtgcGTGTGTACAATGACAACTT

Function

GO: NA

KEGG:

id description
K19931 LIN7; protein lin-7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1967079 lncRNA upstream 24410 21895878 ~ 21896108 (+) True G1716905
TU1967072 lncRNA upstream 29704 21890518 ~ 21890814 (+) True G1716898
TU1967062 lncRNA upstream 40286 21879990 ~ 21880232 (+) True G1716888
TU1967059 lncRNA upstream 42349 21877874 ~ 21878169 (+) True G1716885
TU1967057 lncRNA upstream 43893 21876304 ~ 21876625 (+) True G1716883
TU1967113 lncRNA downstream 38055 21986260 ~ 21990776 (+) False G1716935
TU1967114 lncRNA downstream 38055 21986260 ~ 21987287 (+) False G1716935
TU1967116 lncRNA downstream 38055 21986260 ~ 21990776 (+) True G1716935
TU1967187 lncRNA downstream 71122 22019327 ~ 22019604 (+) True G1716998
TU1967193 lncRNA downstream 87292 22035497 ~ 22036125 (+) True G1717004
XM_036957276.1 mRNA upstream 50773 21650654 ~ 21869745 (+) False LOC110499997
XM_021577099.2 mRNA downstream 43013 21991218 ~ 22007807 (+) False LOC100653451
XM_036957280.1 mRNA downstream 43013 21991218 ~ 22007807 (+) True LOC100653451
XM_036957285.1 mRNA downstream 61761 22009966 ~ 22011099 (+) True LOC110500917
LOC110501027 mRNA downstream 169776 22117981 ~ 22119671 (+) True LOC110501027
XM_036957287.1 mRNA downstream 193487 22141692 ~ 22175639 (+) False LOC110500003
TU1965907 other upstream 920381 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 1361767 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 1806627 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 2296604 19602461 ~ 19623914 (+) False G1714090
TU1967360 other downstream 227758 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 770714 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 834280 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 872547 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 901687 22849892 ~ 22851407 (+) True G1717517

Expression Profile