RNA id: XM_036957289.1


Basic Information

Item Value
RNA id XM_036957289.1
length 3963
RNA type mRNA
GC content 0.52
exon number 25
gene id LOC110500003
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 22141692 ~ 22175639 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGGGATATACGGCAAACTTGTGGAAGTTGGGAATTCGCCATGAAGCTTTATCAAAAGGTGTTGCGTACGGCTCGAGAGAGCACTGGAAAGTGAACTTTTGGAATAGCGTTAAGGTCGCCCTTCAAGAAGTTGACGCTTGTGAAGTTATTCTTTTTGAATTGGATCCACAGTGGGGGGGTGAAGATGATGTCCGACGCCAGCGAGATGTTGGCTGCCGCCTTGGAGCAAATGGATGGGATCATAGCAGGCTCCAAGGCCATGGACTACTCCAATGGGCTGTTTGACTGCCAGTCGCCCACCTCTCCCTTCCTGGGAAGCCTGCGGGCACTGCACCTGCTGGAGGACCTGCGGGCGGCGCTGGAGATGATGGAccaggatgagagggagggcCTCCGCTGCCAGGTCCCTGACACCACCGCCGACGGCCTAGTGGAGTGGCTGCAGCAGGGACAACTGACCAACGGAAATGGCTCCGCCATGATCTACCAGGAACGACTGTCACGGGTGGAGAGTGATAAGGAGTGTCTCGTCCTCCAGGTGAGTGTTCTCTCAGACCAGGTGGAGGTGCAGGGGGAGAAGATCAGGGATCTGGACATGTGTCTGGAGGAGCACAGAGAGAAACTCGACGCCACTGAAGAAACGCTGCAGCAGGAGCTGTTGAGCAGGTCGACCCTGGAGACCCAGAAGCTGGAGCTGATGACCGAGGTGTCCAGTCTGAAACTGAAGCTGACCACTGTGGCGAGAGATCTCAGGGATAGTGAGGAGTTGTACCAGGAAGTCAATGACCTGCGGTTCAGGGTGACCGATATGGAGAATGAAAGACTGCAGTGTGAGAAGAAACTTAAATCCACCAAAGAGGAACTGCAGACTCTTCAGAGGCAGCTGGAGGAGCTGAGGAGACTTAAAGACCAGGCTACACAGGGAGTGCTGACCCCAGACAGAACAGATGGAGAGAAAGATGTGGATGTGCTGAGGATGAAGAGGGCCATGGAGTCCCTGACGTCAGCTAACAATGACAAGGACCGGAGGATCGAGGAGCTTCAGGAGTCTATCACACGGTACAAAAAGGTCCAGGACTTGGTGAAAGACACACTGAATGAAGACGATTACGATGACATCCAGGATGACAGATCCCCCTCCATTCAGGTCGCCATGGATACAGACCGGGCCACCCTGGCAGTtggggaggagacaggaaggAGCTGTGACGAGATTCCATCTATTGCAGTGTTTTCAGAGCTGAAGCAGGAAAGCCTGATACAGGAACCAGACACAGACAGTCCACCAGAAGTCCCACCACATTCAGTAGGTAGCCTGGGCCACATaaacagcaacacagagcagACTACAGTTGAGGAGCCCAGCCCCCCATCCAACCCCAGCAGTAATGAAAGCTTTGGGACCAAGAAGGCCCGCTCCTCCTTTGGACGTGGTTTCTTCAAGATGCGTGGAGGCAAGAGGACGTCCAGCGCCCCAAATCTGGCTGAGACCGAACGTAAGGGCACAGACCACTTGGACTTGGCTGGTGCCCCGCCACACAAACCTCAGGGAGGAGACAGCAGCCAGACCCTACCTTCCTCACCAGAGGCCAAGAAGAAGTCCAAAGGCTTTATGAAGTTCTTAGGCAGGCTGAAGAGAAGTCACTCCACCTCGCTAGACCCGGAGGAGACTGAGTTCAGGAGGGGAGGAGTCAGAGCCACGGCCGGCCCCCGACTGGGCTGGTCACGTGACCTGCAGCACAGCGCCGAtgATGTGGACGCTCCCTTTGCGCAGTGGAGTaaggagcaggtgtgtgtgtggctgcaggAGCAGGGCCTGGGGCTGCACGTGGCTCAAGCCCAGCAGTGGATCCGCTCAGGATTCACCCTGCTGCAGGCCTCCCAGCACGACCTGGAGAAGGAGTTGGGGATCAAACAGCCCCTCCACAGGAAGAAGCTGCAGCTGGCTCTCCAGGCACTGGGATCAGAGGAGGATGTCAGCAAGGCCAAACTGGACCACAACTGGGTGACCAGATGGCTTGATGATATTGGTCTGCCACAGTATAAGAGCCAGTTTGATGAGGGGAGGGTCGATGGACGAATGCTACACTACATGACTGTGgatgacctgctgtctctaaagGTGGGCAGTGTTCTCCACCACCTCAGCATCAAGAGAGCCATCCAGGTCCTCCGGCTCAACTTCTACGAGCCCAACTGCCTCCGCCGACGGCCCTCTGACGAGAAAATGTCTCCCCAGAACAACATCACACCAGGGGAGATCTCCCAGTGGACCAATCACAGAGTGATGGAGTGGCTGAGATCAGTGGACCTGGCTGAGTACGCTCCTAACCTGAGGGGCAGTGGTGTGCACGGGGGGGTCatgGTGCTGGAGCCTCGCTTCAACGTGGAGTCCCTAGCCCTTCTGCTCAACATCCCTCCCAACAAGACCCTGCTGCGCCGCCACCTGGCCACCCACTTCCACCTGCTCATCGGCTCCGCTGCCCAGCGCAGCAAACAGGAGTGTCTGGAGAACCCTGACTACACCCTGCTCACTGCCACCGCCAAGGTCAAGcccaGAAGGCTGCCGTTTGGTGGCTTCGGGACCCTGCGTAAGAAGCGCCAGGAGGACAGCGAGGAGTACGTGTGCCCCATGGACGTGGAGATGCCCAAGAACAGCAGCTTCCAGGGGGACCTGAGGATCTATGAGGACAACCTGGACCAGATGGAGGACTCGGAAGGGGCTGTGAGGCAGATAGGAGCATTTTCTGAGGAAATCGACAACCTGACGAGCATGCTGAAGGAGGATGAATTCTTCAGCGAGGTCTCCTCTCGCTCCCCCGAGGCCAGTGTCACCGATGACGACTCCAACGTGTGAGGGAGGGTTCCCGCCAATTAAATGTATTAGCTttagatgactgacagggggtGCTGTTTTGCAGCCACCACACAGCCATTTTGTTACTCCTCAATTGTAAAAAAAAGATTTTAGAAGCTGTAGAAATgcattaatgtctacatttgtttttgacaAGTATATTATATTAGACACCTTTTAATGCATACTTTGAAATGATGTGTAAAAATACAAGGGAGTACTAATgatactgtccccactacaacaaataAATACCTAAAtgcatgtaattttgtcctttaAACATTTGATTGAAGTGCTGTAGAATTCAAATAATTCCTATGGAGGAGTGCTCCTTCTGAGGAGCACCAATATGGCTGAcgggtggcttcaaagcctctcattggctgttacatagcatcagcaatccagggtttatacacatcattggCCCCAGCTGGCGTCGCCatgcaaacccccccccccctacacacacacaccttgataaGCTGTCTTCTACAACCTGAGACCACCTATGCCCTTACGTCGTTGTCGTTTCAGCAATTTACGATCTCTTGCTCTGCATTCCCAAGTGAAGTTATACATGTGTATTTATTTAAGTTGTTGAAATGTAGCATGACTTGAGATTTCAACATGGGAGCATTTACTTTATACTTCCATACTTTTGTGTTACAGAACTGTTTTTTTCTATATATTTGTTTGAATATCCATAAATGAGTCCCTGTACTTACATGGTATGCCATTGTCCTGACTGACTTATTTTTGGAACCCTCTCACGCCTATTAGCAATTATATAACCTAAAAGATTGGTCAACTCGCAGTGGGACACTTAGACTGCAATGTTTTGACTTTTAATCCATAGTTGTCTCATTTGATGCTCCTGTTTGTGTCCCAAAGTAATTCAATATTATCACTTTGGTTTGTCCTGCCATGTGGAATTTTAGGAACATGGAAGCCCAATGTTCTAGAATGTGAACATCACCAGAAAGCAATGATATTGTTTTGCAAGCCTTAACCATATCAGTGAACACAATGTAATGTACTGTGTACTGTTTCTATGCATCTTTTTGTGAAGAATTGTCAATAAAAACATGGTAAAATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1967406 lncRNA upstream 6875 22135665 ~ 22135929 (+) True G1717204
TU1967401 lncRNA upstream 16161 22126312 ~ 22126643 (+) True G1717199
TU1967397 lncRNA upstream 20721 22121655 ~ 22122083 (+) True G1717195
TU1967396 lncRNA upstream 21743 22120850 ~ 22121061 (+) True G1717194
TU1967214 lncRNA upstream 78904 22063403 ~ 22063900 (+) True G1717025
TU1967414 lncRNA downstream 8778 22184417 ~ 22184659 (+) True G1717212
TU1967420 lncRNA downstream 14801 22190440 ~ 22190541 (+) True G1717218
TU1967419 lncRNA downstream 15161 22190800 ~ 22191215 (+) True G1717217
TU1967448 lncRNA downstream 61222 22236861 ~ 22270892 (+) True G1717246
TU1967567 lncRNA downstream 246492 22422131 ~ 22422412 (+) True G1717364
LOC110501027 mRNA upstream 23133 22117981 ~ 22119671 (+) True LOC110501027
XM_036957285.1 mRNA upstream 131705 22009966 ~ 22011099 (+) True LOC110500917
XM_021577099.2 mRNA upstream 134997 21991218 ~ 22007807 (+) False LOC100653451
XM_036957280.1 mRNA upstream 134997 21991218 ~ 22007807 (+) True LOC100653451
XM_021577093.2 mRNA upstream 194599 21920518 ~ 21948205 (+) True LOC110499998
XM_036958468.1 mRNA downstream 151088 22326727 ~ 22337006 (+) True LOC118943003
XM_021577138.2 mRNA downstream 538487 22714126 ~ 22716877 (+) False LOC110500014
XR_002470055.2 mRNA downstream 553552 22729191 ~ 22730990 (+) False LOC110500032
XR_005038741.1 mRNA downstream 553552 22729191 ~ 22730990 (+) True LOC110500032
XM_021577146.2 mRNA downstream 719119 22894758 ~ 22914536 (+) False LOC110500034
TU1965907 other upstream 1142667 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 1584053 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 2028913 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 2518890 19602461 ~ 19623914 (+) False G1714090
TU1967360 other downstream 324 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 543280 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 606846 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 645113 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 674253 22849892 ~ 22851407 (+) True G1717517

Expression Profile