RNA id: XM_021577138.2


Basic Information

Item Value
RNA id XM_021577138.2
length 1993
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110500014
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 22713864 ~ 22716877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGGCTGGGAAAGGAAAGTCTTCCCTTTCTGATGTGCTTCCTCTGTCAGATTCGGACGACCACGTGTGTCCTCCTATTTCTATTCACAAGTCTTGGAGTATGCTCAGGAGGATTTGGGAATCCTGTCACAGATGACGTGAGCAGGCTGATGTTATTGAAACACAATATTCCAAAGGATTATAACATTTCTATACATTATATTCCCAAAGAGAGGAGTGGTGTGTGCTGGGTTCTACTGAATATCTATCCACTGGAACAAAGCCTCAGGGAACTGGCCCGGGTGTTTGGTGCCATTTCTTCCAACAAAGATAATATTATGATCTTCATCACCATGCTGCAAAATCTACGCTTCAAATTTGATCATGAGGAGCTGGAGGCAACAATGCAAGTCTTTAAATGCCACTATAGGGCGGTCAAATGGCCGTCTGGGCAGTATTTCGACTATATCAGAGACATTTTGAATTCTGCAGCTCAGGGAGAAGGAGGATTCCGCTGTGTGCCTCCACCCTGCCCTGCCCCTACTACACCAGGAAGTGAAGCACAGGATCATGAACAGACTCGGTCAAGGGGGAGTCTGCTGTCCCTGCTTCCGATCCCAGTCACAGCCTGCGTGTTCCTCATTGTGTGGGCGATTAAATCTAGAAGAGGAGGCTCCCCAGAGAGTAACCTTGAGAGAGGCCATAGAAGGCTGTCCACTGATGTGGAACGGACCATAACCATCCCTATTCCACCAGTCACCAGTCCAACTGACACACCAATAATGGGGGAAGCCTGATCACCACTGAGGGAGCAGAAGAAGCCAACATCAAGCACTGCATAGAGATCAGAAAGCTCCCCGTCTGGACTGGTGTCACTCTGAACAGGTGTCACTCTGGACTGGTGTCACTCTGGACTGGTATCACTCTGGCCTGGTGTCACTCTGGCCTGGTGTCACTCTGGACTGGTGTCACTCTGGACTGGTATCTCTGATTCTTCTTGGGTGATATCCCTGAGAGAACAGAGCTGAAATCTCTTATTTGGTATCTTTGACATATCGGAGCTGATATCTCTATAATATATGGGCTGATATAGGGTCTCACTTAAACAAGGGACAACGGCAATAAGACATTAATCAACCGCTTACTAGAACTAAATAATTTGGACTGTCATATATTTTGACACAACACCATGTATCGCAGGTTCCTACCTTGTCTATGTCTGTCTAATCAGAGATTTTGACATTACACAACATCAGAGACATTCTCTACTGAGACTGGACTTTGTTGTTGCCTAAATATCTATTGCTGCTGTGTGGCCACAGAGTGTGTGCTGACACTTTTTTGTCTCACCCCTCTTTGAGTCACATCATCAGTGTGTGTGACCACAGTATGACAGTTTAACtgcccgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtaagctACCCTGCTCTGGATGATCTCAGTGAGGGCCATAAGAGGGGCTTGTTCTCGTCACAAAAGAAAAAAGCCGTAGGCTGAAGGAAATACCAGTTCCATGCTAACcgacagagacagatccttatGAATCAAAAAACGTTTGATCCTCAATCCCCAGACAGCAGGAAACCATGTTTCTCTGCCATCTCCTCTCATGTTGCACTATCACACGCATTATGAAGCCttaccactgggcacagacgtcaattcaacgtctttTCCAAGTTGGTTCAACTTAATTTTATTGAAacgatgtggaaacaacgttgattctatcagtgtgtgcccagtgggataggaCTGACTGATTTCAAGCATAAGTTATGGCTGCTTTTTAACTCCCCTCTAGTGGTCAGATACAATAACTATACTTGGTTCCCTCAGCACCTACAGTAGGTCCCAGCTGTAGCAAGACAGtcactgtgcagtctgactgagggatcTTTTTGTACAGATCTGTATCACTGTGGAACACCTAGACACTTtatgtagatagtgtagtgtagtgtagtgtagtgtagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1967722 lncRNA upstream 358 22713545 ~ 22713768 (+) True G1717514
TU1967708 lncRNA upstream 50168 22663742 ~ 22663958 (+) True G1717500
TU1967567 lncRNA upstream 291714 22422131 ~ 22422412 (+) True G1717364
TU1967448 lncRNA upstream 443234 22236861 ~ 22270892 (+) True G1717246
TU1967419 lncRNA upstream 522911 22190800 ~ 22191215 (+) True G1717217
TU1967748 lncRNA downstream 20894 22737771 ~ 22743135 (+) True G1717538
TU1967733 lncRNA downstream 86254 22803131 ~ 22834858 (+) True G1717523
TU1967732 lncRNA downstream 86548 22803425 ~ 22848933 (+) True G1717522
TU1967736 lncRNA downstream 148954 22865831 ~ 22873187 (+) True G1717526
TU1967734 lncRNA downstream 161632 22878509 ~ 22881503 (+) True G1717524
XM_036958468.1 mRNA upstream 377120 22326727 ~ 22337006 (+) True LOC118943003
XM_036957287.1 mRNA upstream 538487 22141692 ~ 22175639 (+) False LOC110500003
XR_002470055.2 mRNA downstream 12314 22729191 ~ 22730990 (+) False LOC110500032
XR_005038741.1 mRNA downstream 12314 22729191 ~ 22730990 (+) True LOC110500032
XM_021577146.2 mRNA downstream 177881 22894758 ~ 22914536 (+) False LOC110500034
XM_036957319.1 mRNA downstream 178316 22895193 ~ 22914536 (+) True LOC110500034
XM_036957320.1 mRNA downstream 197954 22914831 ~ 22920359 (+) True LOC110501029
TU1967360 other upstream 533229 22175963 ~ 22180897 (+) True G1717161
TU1965907 other upstream 1713989 20998598 ~ 21000137 (+) False LOC110499980
TU1965448 other upstream 2155375 20558422 ~ 20558751 (+) True G1715392
TU1964921 other upstream 2600235 20109198 ~ 20113891 (+) True nmes1
TU1963818 other upstream 3090212 19617394 ~ 19623914 (+) False G1714090
TU1967725 other downstream 2042 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 65608 22782485 ~ 22784445 (+) True G1717516
TU1967730 other downstream 103875 22820752 ~ 22879923 (+) True G1717520
TU1967727 other downstream 133015 22849892 ~ 22851407 (+) True G1717517
TU1967841 other downstream 297929 23014806 ~ 23022764 (+) True LOC110500038

Expression Profile