RNA id: TCONS_00052372


Basic Information

Item Value
RNA id TCONS_00052372
length 986
lncRNA type sense_over
GC content 0.52
exon number 7
gene id XLOC_025696
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 48234445 ~ 48327160 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTTGAACCTGGAGTAGCGGATGTGAAAATGCAAGAAGAGCTGGTCAGTCAGTACCTATCGGCCCTGCAGAGTCCAGAGGTTTTGACTCGCTGTGGCTGTGCTCTCGCCTTGGGCTCACTACCTCCGTTCATGATCCACAACAAACTACAGCAGATCCTGTCTGGGCTCCAGGCAACCTGTAGGGTTGCTCAGAAAGGGGAGAGTCTAACAGAAGCCAGGAGGGATGCTGCCACAGCCATGTCTCAGGTGTGTGTGGCTGTAGGAGTGTGTGCGCAAGGCAGGTCAGACCAAGTCCTGTGTGAGGACAATATAAGGCCTGTGTATGAAGCCCTGCTGGGTTGTATGAACGACTACAGCACTGACAGCAGAGGAGACGTGGGGGCCTGGGTGCGAGCGGCAGCGATGAGCAGCCTCATGGACGTGACATTGCTGGTGGTGGCATCGGCTCCAGAGCTGCTCTCCTCTGACCTTGTCCTGCGCATGATGTGTTGCCTGGCCCAGCAGGCTGCGGAGAAGATCGACCGCTACAGGGCCCATGCTGGCACTGTTTTTCTGCGCCTGCTCCATGGCACAGATCCTGCAGTACCTCACATTCCCCACCATGAGGAGCTACTGAGCATCTTCCCTCCAGAGACTGGAAACTCCCTGAACTGGAACGCAGCATCACAGGCCTTCCCTCACATCACACAGCTGCTGCGCCTTCCTCAGTACCAGTATCACACGCTTCTGGGTCTTTGTGTGTCTGTGGGAGGCCTCACCGAATCTACAGTAGGTCACACCACATAAACACAACCATTAAAACACAGTGGCCTCTTTTTTGCTTAAAggaacacacttttttttctgtcatttacaaTTGAGAGTAAACAGTTGactttaaccatttttttaatccatttagcgCATTTGTTGTTCTGGCagggtcacttttagcttagcttagcataattaattaaattagattagaccattagcattttcttcc

Function

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007021 tubulin complex assembly biological_process
GO:0007023 post-chaperonin tubulin folding pathway biological_process
GO:0006457 protein folding biological_process
GO:0034333 adherens junction assembly biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0007420 brain development biological_process
GO:0010842 retina layer formation biological_process
GO:0016328 lateral plasma membrane cellular_component
GO:0048487 beta-tubulin binding molecular_function
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052779 lncRNA upstream 255593 48040338 ~ 48041913 (+) True XLOC_025693
TCONS_00052778 lncRNA upstream 799163 47494522 ~ 47498343 (+) False XLOC_025691
TCONS_00052777 lncRNA upstream 799163 47494522 ~ 47498343 (+) True XLOC_025691
TCONS_00052773 lncRNA upstream 888107 47395574 ~ 47409399 (+) False XLOC_025689
TCONS_00052780 lncRNA downstream 123482 48439066 ~ 48442896 (+) True XLOC_025697
TCONS_00052781 lncRNA downstream 149255 48464839 ~ 48467557 (+) True XLOC_025698
TCONS_00052782 lncRNA downstream 302577 48618161 ~ 48629771 (+) False XLOC_025701
TCONS_00052783 lncRNA downstream 305536 48621120 ~ 48629771 (+) True XLOC_025701
TCONS_00052784 lncRNA downstream 578883 48894467 ~ 48907830 (+) True XLOC_025703
TCONS_00050564 mRNA upstream 67534 48221413 ~ 48229972 (+) True XLOC_025695
TCONS_00050563 mRNA upstream 82319 48206469 ~ 48215187 (+) True XLOC_025694
TCONS_00050562 mRNA upstream 742729 47552353 ~ 47554777 (+) True XLOC_025692
TCONS_00050560 mRNA upstream 910129 47322494 ~ 47387377 (+) True XLOC_025688
TCONS_00050559 mRNA upstream 1039062 47245764 ~ 47258444 (+) True XLOC_025687
TCONS_00050566 mRNA downstream 157762 48473346 ~ 48489887 (+) True XLOC_025699
TCONS_00050567 mRNA downstream 245528 48561112 ~ 48578458 (+) True XLOC_025700
TCONS_00050568 mRNA downstream 527334 48842918 ~ 48869632 (+) True XLOC_025702
TCONS_00050569 mRNA downstream 705495 49021079 ~ 49024570 (+) True XLOC_025705
TCONS_00050570 mRNA downstream 728333 49043917 ~ 49058326 (+) True XLOC_025706
TCONS_00050561 other upstream 836903 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050528 other upstream 2662320 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050515 other upstream 3409353 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050507 other upstream 4580591 43716827 ~ 43716915 (+) True XLOC_025656
TCONS_00050506 other upstream 4582723 43714699 ~ 43714783 (+) True XLOC_025655
TCONS_00050573 other downstream 816757 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050578 other downstream 1754011 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050613 other downstream 4304474 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050620 other downstream 4513328 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050635 other downstream 5751939 54067523 ~ 54067639 (+) True XLOC_025764

Expression Profile

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