RNA id: XM_021577146.2


Basic Information

Item Value
RNA id XM_021577146.2
length 4411
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110500034
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 22894758 ~ 22914536 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGCCCAGTGCGATCAGGGagttctattggagaagcagttttagcctatcttcatactgtactgtctttgttgTAGCGGTAGCCTATGGTCCACTGTCCTAAACCAGGAACAACAGTCGCGCAAGTCATTGCGAGATGGCTCAGCAATTGTTATTAAAATTAATTTGCGATCATCAGGGAACATTGGACTATGCACATCTGGCAGATGTTGGGGTTGGGGCAGATATTATCTGCGCTCTTGATAAACTTGTTGAAAACGATTTATTTTCTATAGCGCTGTGCAATGGAAACAAACGCATTATTGCGAAAACGAAAGTTAGACGCTGCAAAGCGCAGCAATGTGATGGCTGCAATGATTTACACTTATGTAAATTTTATCTATTTGGGGACTGCAAGAATAGTAGGGGAAGACGGACATGCCGCTTTGGCCATGACCTTCACTCCGAACACAACTCCATAGTTTTGAGAGAGCATAAACTTGAGACGCTGAGTAGACAGGAACTCCGGCAGCTATTATTACAGAATGACAACTCTCTCCTTCCACCGGTGTGCAACTCTTATAACAAAGGCACCGGGCAATATGGCAACTGCCCTGATCAGGAGGGGTGCAGGAGACTTCACGTGTGCGACAGGTACATCAGAGGAACCTGCTCCTCGGGAGCCAACTGCAACAGGTGTCATGACTTCTTCGAGCCACACCCACGGAGGACCCTGCAGCAGAGGGGAGTGCCAAACGATCTAATGACATCCATGTTGTCCACCTACCAGAACATCCAGGCCATGAAAAGTGAAGGTGCCGGCGGTGCTTCTTCCATCAACAGGCCCCAGAGCTGTCCTCAGAGGAATACAGTGAGGAATGAGATCTGCCTGTTCTTTGTCAAGGGGGACTGCAAACAAGGAGAGAAATGCTGGAGAGTCCACTTCAAAATGCCCTACAAGTGGGAAGTGAACGATGGACAGACTTGGTCAGCTCTGCCAGCAAACGAAGAAATCGAGAGAGACTTCTGTGACCCTTCTAAGATACacagTGAGGGATCTGAGCGTGTGCGTTTCGACTCCATGAGCCACGGGTTACGGGAAGTTCGCCGTCTCTCCACAGTTTCCTCTGTGACCCAGCCCACATACGTACTCACCACAGAGTGGGTGTGGTTCTGGGAAGACGAGTACGGCAAATGGGTCCAGTACGCATCCATCAAAGAGATGCACAGATTGTCATCCATCACCAGTGAAGACCTTGAGAAAAGGTTCCAGGAGGATCAAAGTGCTGTGGTGAAGTTCACTGCAGGCCAGCAGTCTTATGAGCTGAGTTTCAGAGACAtgacacaaaaaaacaaagcatATGGTACTGTAAGGATGGTCAGACGACGTCCAGTCTTTGTTTCAACTGTGGACGCACAAGCTGCAAGGAGCAGGAGAAATGGACCACGCAATTTCAGAGCTGTTCCTGGATCTTGGGACAAGTCTGCGATACCCGACATTGGATACAAGACAGTCTCTCTTCTGAGTTCTGACAGGGACTATCAGAAGGTCCAGGGACTTTTCAACCAGACCATGAGGGGCTTTCAAATCACCAGCATCGAGAGGGTCCAAAACAGAGACCTCTGGGAAGTCTTCCAGTGGAAGAGAGATTTAATGAAGAAAAACAATGGAGGTCAAAACAGCAAGGAGCTACATCTCTTCCACGGAACGGACCCAAAACACGTAGAGGCCATTTGCAGAGATAACTTCGACTGGAGGCTGTGTGGAACCAACGGAACTGTGTATGGCGAAGGGAGTTACTTTGCCAGGGATGCCAAGTACTCACACAGCTACACCAGCCACTCAGGAGTGAGGTCCATGTTTGCTTGTCAGGTGCTTGTTGGCGACTACACACAGGGGAACTCGGGGCTCCGTCGCCCCCCTCCAAAAGGCGAGGGAAGCCCCACTCTCTATGACAGCTGTGTGGACAATGTCCTGAACCCATCCATATATGTGGTGTTTGAAAGGCACCAGGTTTACCCAGAGTTCCTCATCAAATATGATGGTAGCGTCATGCACTGGTCCACATCGGCTCCAGCTCCCCCCAAAACTGTCTCTATCCAATCCACTTCCTTAACCCCAACATCCAACCGGATTCAAGCCACAGCTGCTGCCACCCCATCGAAGAGAGTTCCATCCACTTTGAATCCATTTAAAACTGCAGCAACCACTTCCTCAAATCCAACCCATTCTCGTCCCACTTCACATTTTGTCCATCAGTCGCTCCCAAAACCTGCCCAAGCCCCATTGATATTCATTCAATCTCCAGTCCTCATAAAGCCAGCCACAAGTTCTCAATTAGTGGATATCACCCGAGGCCCAGATTACACTTCCTCATTTGCaaacctctctcacacactcactacccCAGCCAGTACACCCTCTCGTACGTTCACTACCCCTGCCAGTACACCCTCTCGTACGCTCACTACCCCTGCCAGTACACCCTCTCGTACGCTCACTACCCCTGCCAGTACACCCTCTCGTACGCTGACTACCCCTGCCAGTACACCCTCTCGTACGCTCACTACCCCTGCCAGTACACCCTCTCGTACGCTCACTACCCCTGCCAGTACACCCTCTCGTACGCTCACTACCCCTGCCAGTACACCCTCTCGTACGCTCACTACCCCAGCCAGTACACCCTCTCGTACGCTCACTACCCCAGCCAGTACACCCTCTCGTACGCTCACTACCCCAGCCAGTACACCCTCTCGTACGCTCACTACCCCTGCCAGTACACCCTCTCGTTCGCTCACTACCCCTGCCAGTACACCCTCTCGTTCGCTCACTACCCCTGCCAGTACACCCTCTCGTACGCTCACTAGCCCAGCCAGTACCCTCTCTTATACTCTCCCTGCTCCAGCCAGTACCCTCTCTTACACACTCCCTGCCCCAGCCAGTACCCTCTCTTATACTCTCCCTGCTCCAGCCAGTACCCTCTCTTATACTCTCCCTGCTCCAGTCAGTACCCTCTCTTATACACTCCCTGCCCCAGCCAGTACCCCATCTTATACGCTCCCTTCCCCAGCCAGTACACCCTTTCCTACACTCACTACCCCAGCCAGTACCCCATCTTATACACTCCCTACCCCAGCCAGTACCCCCTCTTATACACATCCTACCCCAGCCAGTACCCTCTCTTATACATTCACTACCCTAGCCAGTACCCCCTCTCCTACACTCACTACCCCAGCCAGTACAGCCTCTAGTAGACTCGCTCCCCCAGCCAACACCACCTCTCGAAGACTGGCTCcccaaccccccaccccctctcctacACTCACGCCCTCACCCAGTGCCCCCTCTTGCACACTCACGCCCTCACCCAGTACCCCCTCTTATACATTCACTACCCCAGCCAGTACCCCCTCTTATACACTCACTGCCCCAGCCAGTACCCCCTCTTATACACTCACTGCCCCAGCCAGTACCCCCTCTTATACACTCACTGCCCCAGCCAGTACCCCCTCTTATACACTCACTGCCCCAGCCAGTACCCCCTCTTATACACTCACTGCCCCAGCCAGTACCCCCTCTTATACACTCACTGCCCCTGCCAGTACCCCCTCTTATAAACTCACTGCCCTAGCCAGTACCCCCTCTTATACACTCACTGCCCCAGCCAGTACAGCCTCTCGTAGACTCGCTCCCcaaccccccaccctctctcctacACTCACTCCCTCAGCCAGTACCCCCTCTCGCACACTTTCCCCCTTAACTGGCACCCTATCTTGGGCTCACACCCGCTCAACAACCACTACTCGCACTCTCTCTGACAGCAGTTCTTCTCACCCACTATCCCCTACATCCTCACTGAGCACACCTTATCCCACACTTTCTCACTCATCCTACTCCCCCACTTACACACAAACTCCCTCACGCACTTCCCCCTCCACGTCAAGCCATTCTTCTAGCACACTCTCCCCCTCAGATAGGTTGCTATCTCGGGTGTTCTCTCCCTCGACAGGTGCCTCCACTAGATCTCCTCCTGAGTCACTGTACAGTGTTCCAACAGCTCATAGGAGGGACACCAAAGAAAAGAACAAGTGCCTTCTCCAATAACTTGCCTTTGTCAGGGTGGAGCAGTAAGTTAATAGAAGGTTTTGATGGCGAActtcacattttcaaaaacaGAACATTTATTAAAATTATGAATGATAATGCATTTGCATACTAAATATGTTTTATAGCTGTGTATCTTTACCTTGTAGGGGCTTAATAATAGTAAAGCTGTTCACAACTAACCAGACGTTGGTAATTTTGCACAAATATGAATTTGATGAGCATGTTTCCTTTACTCAGGTCTGCTGACAGTCTATACATTTTGTAAATGAAACAGGTTTGATTTCTCTGTTTTAAACTGAATAAACTCAAATAATTGATTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1967734 lncRNA upstream 13255 22878509 ~ 22881503 (+) True G1717524
TU1967736 lncRNA upstream 21571 22865831 ~ 22873187 (+) True G1717526
TU1967732 lncRNA upstream 45825 22803425 ~ 22848933 (+) True G1717522
TU1967733 lncRNA upstream 59900 22803131 ~ 22834858 (+) True G1717523
TU1967748 lncRNA upstream 151623 22737771 ~ 22743135 (+) True G1717538
TU1967875 lncRNA downstream 43139 22957675 ~ 22962698 (+) True G1717642
TU1967882 lncRNA downstream 59273 22973809 ~ 22974014 (+) True G1717649
TU1967883 lncRNA downstream 59544 22974080 ~ 22974317 (+) True G1717650
TU1967887 lncRNA downstream 64964 22979500 ~ 22979595 (+) True G1717653
TU1967886 lncRNA downstream 65608 22980144 ~ 22981466 (+) True G1717652
XR_002470055.2 mRNA upstream 163768 22729191 ~ 22730990 (+) False LOC110500032
XR_005038741.1 mRNA upstream 163768 22729191 ~ 22730990 (+) True LOC110500032
XM_021577138.2 mRNA upstream 177881 22714126 ~ 22716877 (+) False LOC110500014
XM_036958468.1 mRNA upstream 557752 22326727 ~ 22337006 (+) True LOC118943003
XM_036957288.1 mRNA upstream 719119 22142804 ~ 22175639 (+) False LOC110500003
XM_036957320.1 mRNA downstream 295 22914831 ~ 22920359 (+) True LOC110501029
XM_036957329.1 mRNA downstream 100081 23014617 ~ 23032420 (+) False LOC110500038
XM_036957328.1 mRNA downstream 100346 23014882 ~ 23032420 (+) False LOC110500038
XM_036957331.1 mRNA downstream 100346 23014882 ~ 23032420 (+) False LOC110500038
XM_021577152.2 mRNA downstream 119189 23033725 ~ 23040825 (+) True LOC110500039
TU1967730 other upstream 14835 22820752 ~ 22879923 (+) True G1717520
TU1967727 other upstream 43351 22849892 ~ 22851407 (+) True G1717517
TU1967724 other upstream 110313 22782485 ~ 22784445 (+) True G1717516
TU1967725 other upstream 173684 22718919 ~ 22721074 (+) False G1717516
TU1967360 other upstream 713861 22175963 ~ 22180897 (+) True G1717161
TU1967841 other downstream 100270 23014806 ~ 23022764 (+) True LOC110500038
TU1967919 other downstream 184479 23099015 ~ 23100809 (+) False ruxf
TU1967920 other downstream 184479 23099015 ~ 23100631 (+) True ruxf
TU1968049 other downstream 341590 23256126 ~ 23256812 (+) False G1717785
TU1968048 other downstream 341830 23256366 ~ 23256812 (+) True G1717785

Expression Profile