RNA id: XM_036957328.1


Basic Information

Item Value
RNA id XM_036957328.1
length 4768
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC110500038
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23014617 ~ 23032420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGTTCCGTTAATGTGTGTCAAGCCCGAGTTTGTATAGGTTTTCTGATTCATTCTGCGTGATGAAATTGGCGTGGTTGACCAGACTGTCAGAGTAGCTtgctcgctaacgttagctagcttattAGCATGGCCATGAGAAACGTTTACCCATTGGCGTTTACACACCCGTTATGCGTAGCTGAGACATAAATCCGAGCTAAATTGGCCGTGTAGCCTAGCCAATCCTGCCGGACTGCTAAGTAGCTTTTCTTATCATGGGACAGTGTGCTGTTTCATCATCATAGCTGGCGTGGAGAATGTGTGGTGCTTTATGCGACGTAGTAAGGGAATAACGTTAGCTGTTCGAAACGTCTGACAGCCTGATGTGTCAACATGTGCGCCACCGATACCGTCCGATCATGCAAaaCTCTCCGCTCTTCCACTACCTGCAGGATCTAGGACACACAGACTTTGAGGCGTGTCCCACAGTGTCTCAGGAGGACgagtgtggaggaggagagggggggacgaCCTCCCTCCAGGACAGCCTGTCCAAACCCACAGGAGGACGTCTATGGAGATTGGCTGATGCCTTGTGGAGGCGGAGCCCGTTCCACCAGGCTGCCTCTGCCCATAGGCTGGAGCAGCAGCTGgACTGTGTGTTTGGCCAGTACGCGGTGCAGTGTATCCTGGACCAGGATGTGTTGCTCCAGGAGGATGTGGAGCTCATCGAGCTGTTAGACCCCAGCCTGCTCACCCTGGGCGCCTCGCCCTCCGGCTCACCCAGACGAGACAACTCCCTGCCCTGCCCGCGTCTCCTCGCCTCTCCCTCGCAGTGggATGTAGCAGTGCTGGTGGGCCTGGCTGCAGTGTTACTAggcctgtcctctctctctgccggggcctgCTCTCTGGCTGTGATCCCGTGGTGTGCTGCGGTCATGGGCTGGGTGGGGTTGCGAGGGGCGGGGCTGTGGAGACAGGGGAGGATGCAGAGAGCAGCACACGCCCAGGCCTCCGAGCTGCAGACCATGGTGCTGAACAGTAAGGCTCTGACCAGCCTGGCCCGCAAGTCCCTGAGACTACTACAGGAGACAGAGGTCATCTCTCGAGGGTTCACCCTTCTGCTCGACAGGGTGAGTGCGGCCAGCTCCTTTAGTAGGGCGGGGCTGGGGGCAGGGCCACGGGGGCAGCAGTTGATTGGCCTGCGGAAGGCGGTGTATCGTGCGCTCCGCTCGGCCTTCAGAGCCTCCCGCCGAGCCACGTGCCACATGCTCAAAGCGTACCCCCTGAACTCTGAGATCGACAATGTGACCAACTACGTGTCTGCGGTGCCTCTGAAGGAGCTGGGGATGGGCCTGGGGACAGAGCACCTGACTGACGAGGAGGCACAGGAGCTCACCGATGACTACAGCCTCCCTGCCCTCAAGGTGCTGTTCCAGTTGTGGGTTGGGCAGAGTTCAGAATGTTTCCGCCGATTGGCCCTGCTGCTGTCACCACGACGACTGGAGGAGCCCAGGGAAGACTGGGTTAAAGGTGAAACCCCTCCGCCCATACACCGCTCTGTTGCCACGGTGACACAGCCTCTCCACGGTGCCCTGGCCGGTTGCCTGGGCGACATGCAGCGTAGCTACGAGTTCCACCGGTACTTTGAGACGCAGCGCCGGACGCAGGGCTCGGACAGGGTGGGGCGCGCTCAGCAGAAATGCAGAGAGCTCAACACACTGCACACGTCTGTACGCAGCCTGCAGCTGCATCTCAGGGCCCTGCTCAACGAGATGATTATCCTGGAGGATGACCTGGAGAAGCTGATGGTGACTAAAGAGGCGGTGGAGGTGACTGTGGAGGGCTACCAGGACCTCCAGGAGCGTCTCGGCCACCTGCAGCCCCACATGCAGGCCAGCGCCGGATGCTGGGAGGACACCGTGGGCCAAGTGGAGCGCATGCTGAGGAGAGCTAACACCTGCCCAGGAACTCCTGATGGTCCAGAGCAGTGTCTCCCTCCTGTGCCATGCACACCTGCCCCAACCTACACCCTCATCCTGGACAGGGACCCCGTGCCTGAGGAGCAGGAGCTGGAAGCGTACGTTTCAGACTCAGAGGATGAGAACGGGTGGGCGGGGTCGGTGGTTGACATGCTGTCTCCCGAGGAACGAGAGCGCCAGCGGCGGGAGAGGGAGGAGTCTCGGCGCGTCCTATCGGAGCTCAAAGCCGTACTGGGCCAGCGGGCGTCCGAGGGCGAGAGGAGGAAGTGGAAACAGCTGCTCTTCAACGACCAAGCGGCGGTGATGCCTATCGTTTCCGCGGAAACTTCTATAGAATATCAGATGCCCTCCGACCCATTGGACGCTCTGACCCTTGTGGGCGTAGCCAATCCAGGTGTCGCCGAGGGAAACCACCTATCGGAAAGGCTGAACAACGAGGAGGAAGACTGGATCAGGGACGAGCGCCCCCTCACAGAGGCAGAGGAAAAAGCACTTACAGAGTTCTGCTGTGGTGAGgcagaggaaaagggggaggagggtgaAGGTTGGGCTTCTGTCCCAGCCGGGACGGGCAAGGCGCTCTACCAATACGACGGGCTGCCTGACGAGGGGGCGGGACTGAATGGGCCCGACCTATTGCAGCCACGGGTCCCCACCATCACAGTGATGGACAGGCTGACGGAACTACACGGCTCGGCGGCGCTCAGCTTTAATTCAGCCCTCGCCGCCCAGGTGGCAGCACGTTCATATACCTTCGCCAACATGGAGGAGCAGACGTTTGGAGACAGCGGagaagaggatgagggagagaagcGTTCGCTGCCTGATGGACAGACATGTGAGAAGGACTAGTGTCTAAACCCTCCTGCTTTACGGAGCTTTGAACAGAATAGTAATGGACAGACAGGCTCCTGTATTTATGTCTGACCCCACTCCTGGGTTATTTATTGCGGCTGTCCGTTTCCTTGGCTCCATGGGTCTCTGTCATGTCTTCatcggtgtgagtgtgtgtgcatgattGGGTGAGTGAGAAAGCATTGTGTGTATGCGATGTCTGACTTGTGTTTGTGAGTTTTAAGAAGAAGCACTACACCACTTTATGTTCCACTCCTCCACCCATGCGTCCCTACTTCACCCACAATCCCCCTGTGGCCGCTCTCCTGTGCTACTCAGGTACCAGAACCACAAGACAAACTCTGACCTCACCGTCACAAGGTCTTCAGTTTAACCTTAAGGATCCCCTGTAGCTATTGGAGGCAGAGAGACTTGGTTATAGCATCCATTATATTTTCTCTAACTATTGACCAGTACCTTTCCGTGGTATGTTCACGTTGCTCTAACAGTTTAGCATATTGATGTCTGAGTCAAAAAGCCTGATTTAACTAAATGATTATTAGAATTTTTACCACATCACTCCCTATATGACTCCTGTATTGACAGGCAGAGTCTGATGTGTGGTTGCTCTATTGAACGTGTGCACGGCAGCCCAGGGCAGAATGCTCAGGTACTGAATCACTGACTGAGGGCTGAATGTAagatgtttatatatatatatatatatatatatatatatatatatatatatatatacacacacacagatgttactgcacacacaccacgctgtaaaaggagaaggagaggtacATTTCAAAGAGAGCAGGGCAAAGGTATTTTTAttattactgttttatttctgGTCTGCCTCTCTGAGTCTGCATTTCTACGCACTCCCCGCCTCACTAGGAATGGCCCTATAACTGCAAAGATGTGTTGGCTAAAACACCTGTCACTCAACCTACAGCAACCAATGAGCAGACGGAGACTTCAGAGAGAAGGGTGGACATAGTTGACCTTGTTAAATGGACTAGCCTACCAGATTTGGAAATATTTTAACatgttatgtttttatttgaGAGATGAATATGGTCAGACAGTGGATTGCTGTGAAATGAAATTCATCCCCATCCACTAATGAACCAAACACATTCATAGTGCTTATTTCCCCAATGGTCTCGTCAAGTGCTCATCTGATGAGAGGATGATAACTGGGTGATTATTGAGGTAAAGTGTTCTACTACCTCGTGCCACCCCTACTGCACCTATTATGAAATCTGTTCCGCGGGTGTCTGTAGCTACTACATGTATCTCTGATCTGAATGGTCTGCTGTGTCAGAACGTTTTGGTTCTGTCTTGTGTACATCTGTAAATGTTTCCATGGAGATTGTACCACTGCAtctggagcggcaggtagcctagtggttagagcgttgggccagtaactgaaaggttgctggatagcatccccgagctgacaaggttcaaatctgtcgttctgcccctgaacaaggcagttaatccactgttccccggtaggccatcattgtaagtaagaatgtgttcttaactgacttgcctagttaaataaaggttacattaaatatatatataaaaaatctctctcccctgtctcagcATCTGTGTTTCCATAACGCTCACTAGAATGTGATTCAACTCCATTGATTTGGGACAGTTATTACAGAGTGTCCTGGAATGCTACTATCGTTGATTACAATTAATTAGAGTGATGATCGATGATGATGATCGAAGGACAGCATGTGCTTATTGACTGCACAGATGATTccacttgtgtgtgtgtccggGGGTGTctgaccccccctcccctccacccaccgtgtctgccttgtcttgccttccAGCCCTCTCCCATATGTCCCCTTCCTGAAGTGAGTTCTGCCCCTCCTGCATTTCATTTGTAAAATAAAATGCTATTCTGGAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1967889 lncRNA upstream 29982 22983320 ~ 22984900 (+) True G1717655
TU1967890 lncRNA upstream 31400 22983213 ~ 22983482 (+) False G1717655
TU1967886 lncRNA upstream 33416 22980144 ~ 22981466 (+) True G1717652
TU1967887 lncRNA upstream 35287 22979500 ~ 22979595 (+) True G1717653
TU1967883 lncRNA upstream 40565 22974080 ~ 22974317 (+) True G1717650
TU1967932 lncRNA downstream 75770 23108190 ~ 23108436 (+) True G1717688
TU1967933 lncRNA downstream 89464 23121884 ~ 23131706 (+) True G1717689
TU1967964 lncRNA downstream 100812 23133232 ~ 23134409 (+) False G1717720
TU1967968 lncRNA downstream 100812 23133232 ~ 23134409 (+) False G1717720
TU1967972 lncRNA downstream 100812 23133232 ~ 23134409 (+) False G1717720
XM_036957320.1 mRNA upstream 94523 22914831 ~ 22920359 (+) True LOC110501029
XM_021577146.2 mRNA upstream 100346 22894758 ~ 22914536 (+) False LOC110500034
XM_036957319.1 mRNA upstream 100346 22895193 ~ 22914536 (+) True LOC110500034
XR_002470055.2 mRNA upstream 283892 22729191 ~ 22730990 (+) False LOC110500032
XM_021577152.2 mRNA downstream 1305 23033725 ~ 23040825 (+) True LOC110500039
XM_021576743.2 mRNA downstream 66552 23098972 ~ 23100823 (+) False ruxf
NM_001160558.1 mRNA downstream 66608 23099028 ~ 23100816 (+) False ruxf
XM_021577156.2 mRNA downstream 68558 23100978 ~ 23105006 (+) True amdhd1
XM_021577162.2 mRNA downstream 124663 23157083 ~ 23160673 (+) False klhl42
TU1967730 other upstream 134959 22820752 ~ 22879923 (+) True G1717520
TU1967727 other upstream 163475 22849892 ~ 22851407 (+) True G1717517
TU1967724 other upstream 230437 22782485 ~ 22784445 (+) True G1717516
TU1967725 other upstream 293808 22718919 ~ 22721074 (+) False G1717516
TU1967360 other upstream 833985 22175963 ~ 22180897 (+) True G1717161
TU1967919 other downstream 66595 23099015 ~ 23100809 (+) False ruxf
TU1967920 other downstream 66595 23099015 ~ 23100631 (+) True ruxf
TU1968049 other downstream 223706 23256126 ~ 23256812 (+) False G1717785
TU1968048 other downstream 223946 23256366 ~ 23256812 (+) True G1717785
TU1969665 other downstream 1040985 24073405 ~ 24074448 (+) True G1719225

Expression Profile