RNA id: TCONS_00004793


Basic Information

Item Value
RNA id TCONS_00004793
length 1809
RNA type mRNA
GC content 0.48
exon number 7
gene id XLOC_002577
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7653184 ~ 7671219 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCTTCCGGTTTTGTACTTCTTCGTCCATAGGGCGAATCTGCGTCTGCTGGACTTCATGCACTTGTTTTACGCACTTTATTCCCTTTCCACATGCCTTTAACTTTCCGAGCTTGAGCTTTAAAGAGATGTTAATATTTGGGAAACACTAAATCATCAGAATGGCTCTGAGACACCTGTCAGTGAAGGCTTTCCTTTTTCTCGGCCTTTGTCAAATTGGACGAAGAGGACTTGCCTCTGCCCCTGAAGTCAGAGAAGCGCCCAGAAAAATCGCAATAATTGGAGGTGGTATTGGAGGCACAGCAACAGCATTTTTCTTGAGGCAGGAGTTTGGACCTGCTGTGAAGATCGAAGTGTTCGAGGCAGGGACTGTCGGAGGTCGTCTGGCCACTGAGAACATTGGAGGACACGAATATGAGACTGGAGGATCCATCATTCACCCGCTCAACCTGCATATGAAACACTTTCTGGACAAACTCGGTCTGTCTGTTCGTGCGGATGTTTCTTCTAAAATGGCGATATTTGACGGGAAGGAACTGACCTTTGAAGAGAGCGACTGGTACTTAGTGAATGTCATACGCATGCTGTGGAGATACGGACTCAACTTCATTCGAATGCATATGTGGGTGGAGGGCATTCTGGACAAGTTCATGAGGATATATCAGTACCAGCAGTTCAGCTACTCGTTTTCTAGCGTGGAGAAGATGTTGCATGCCATGGGTGGAGACTCGTTTCTCACTCTGGTCAATCAGACGCTGGAGGAGGCCATGCTGGCTGAGGGCTTCTCTCAGGTCTTCCTCAATGACATTGTTACCCCTGTCACACGAGTCAACTACGGACAGACTGTTCGAATCAATGGATTTGTAGGTGCTGTTTCTCTAGCAGGAGCCAGCTCAGGTTTGTGGGCTGTGGATGGAGGGAATAAGTTGGTTTGTTCTGGTCTTCTGTACCACAGCAAAGCTGAAGTTGTTCCAGCTCGTGTGACTGCCATCTCCATGAAGACCAGGCCATCCAAAACTGGTCCTGTCACAAGTTTCTATGAAGTAAACTACATCGGAGAGTCTGGTGCTGCCCATTCCACCTACGACATAGTTGTAGTTGCCACACCTCTCCACCAGGGCCTGTCGGACATCAACTTCTCAGGCTTCTCTCCACCCATTCCGTCCCACTTTCCTGGTCGATACCACCAAACTGTTGCCACGTTGGTACATGGTCTGCTCAATGTGTCTTATCTGGGCACCACACTCAAGCCAGAAGACTTCTACATTTCAGACGTCCTCACACTAGACAAAAAAGCCTCAGAGATCCACAGCCTGAGCTCTCTGGACCCGGTGAAAATCCCCAAAGGTTACACTCGCAGTTCTGCCACACAAAGCAAAGTGTGGAAGATCTTCTCCTCCCAGCCGCTTTCCGAGAAACACCTACAGCAAATCTTTCTGTCCCAGGAATCTGTGTTTGAGAAGCGTTGGCTGGCATACCCTTCATACAGCCCACCGCAGCGTAGGACGCCTCCATTCATCCTTCACGATCGCCTCTATTACCTCAATGCAGTGGAATGGGCAGCCAGTGCCATGGAGATGAGCGCGATTTCGGCCCGTAATCTGGCCCTGCTGGCTCATCATCGCTGGTACGAGCAAACTGCCAAAATCGATCAAGAGGACCTGCACACCAGACTCAGAGGAGaactttgatgaaggtacaagtAGTGCTGTTAAAAATACCAACTGCTGTTTATCATTGATCAATTTCTAGCTGACATTTGAGTTCTCAAAGAGCTTGTTTACcccaaaaataaaactaactCATTATT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0030327 prenylated protein catabolic process biological_process
GO:0030328 prenylcysteine catabolic process biological_process
GO:0001735 prenylcysteine oxidase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00900 Terpenoid backbone biosynthesis

ZFIN:

id description
ZDB-GENE-050417-98 Predicted to enable prenylcysteine oxidase activity. Predicted to be involved in prenylated protein catabolic process. Predicted to act upstream of or within prenylcysteine catabolic process. Is expressed in Kupffer's vesicle; forerunner cell group; and yolk syncytial layer. Orthologous to human PCYOX1 (prenylcysteine oxidase 1).

Ensembl:

ensembl_id ENSDART00000159330

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004792 lncRNA downstream 16861 7624088 ~ 7636323 (-) True XLOC_002576
TCONS_00005996 lncRNA downstream 399286 7238244 ~ 7253898 (-) True XLOC_002572
TCONS_00005995 lncRNA downstream 591647 7050325 ~ 7061537 (-) True XLOC_002571
TCONS_00004778 lncRNA downstream 821902 6786508 ~ 6831282 (-) True XLOC_002568
TCONS_00005994 lncRNA downstream 957852 6693514 ~ 6695332 (-) False XLOC_002565
TCONS_00004803 lncRNA upstream 108419 7779638 ~ 7782022 (-) True XLOC_002582
TCONS_00004805 lncRNA upstream 139445 7810664 ~ 7811388 (-) False XLOC_002583
TCONS_00004806 lncRNA upstream 139445 7810664 ~ 7811754 (-) False XLOC_002583
TCONS_00004808 lncRNA upstream 143425 7814644 ~ 7820475 (-) False XLOC_002583
TCONS_00004807 lncRNA upstream 143425 7814644 ~ 7821542 (-) True XLOC_002583
TCONS_00004791 mRNA downstream 16844 7623698 ~ 7636340 (-) False XLOC_002576
TCONS_00004787 mRNA downstream 97524 7483545 ~ 7555660 (-) False XLOC_002574
TCONS_00004789 mRNA downstream 97858 7483723 ~ 7555326 (-) False XLOC_002574
TCONS_00004788 mRNA downstream 97858 7483723 ~ 7555326 (-) True XLOC_002574
TCONS_00004783 mRNA downstream 180825 7284121 ~ 7472359 (-) False XLOC_002573
TCONS_00004795 mRNA upstream 2227 7673446 ~ 7702029 (-) True XLOC_002578
TCONS_00004796 mRNA upstream 56062 7727281 ~ 7734939 (-) True XLOC_002579
TCONS_00004797 mRNA upstream 67321 7738540 ~ 7756871 (-) False XLOC_002580
TCONS_00004798 mRNA upstream 67321 7738540 ~ 7756876 (-) False XLOC_002580
TCONS_00004799 mRNA upstream 67440 7738659 ~ 7756865 (-) True XLOC_002580
TCONS_00004790 other downstream 141061 7512008 ~ 7512123 (-) True XLOC_002575
TCONS_00004786 other downstream 301074 7290947 ~ 7352110 (-) True XLOC_002573
TCONS_00004780 other downstream 643694 7009374 ~ 7009490 (-) True XLOC_002570
TCONS_00004776 other downstream 836418 6786333 ~ 6816766 (-) False XLOC_002568
TCONS_00004811 other upstream 199408 7870627 ~ 7892684 (-) False XLOC_002585
TCONS_00004813 other upstream 210110 7881329 ~ 7891866 (-) True XLOC_002585
TCONS_00004819 other upstream 258552 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004848 other upstream 1004671 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004855 other upstream 1345502 9016721 ~ 9016837 (-) True XLOC_002609

Expression Profile

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