RNA id: TCONS_00052373


Basic Information

Item Value
RNA id TCONS_00052373
length 572
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id XLOC_025704
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 48998891 ~ 49006665 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCATGGGTTCGCTCATCCTGGTAAGAAGGGTGATCCTGCACAACTGGAGTAGCTGCACTTTCAGGATTGTATTTTTAGGACCGCATCTTTAGGACCCTAGTTTTTTGTGACATCGCCACCTGCCAGATTGGATCATACACGCTCTAATGAGATGGACGACATGGATGGCAAGAATAATgccATCATATATGCTCTGGGGGTCTTGAGGGGTTTGTCTTCAGATGATGCTGAGCAGGTCTACCCTTCTGGCACAAAATATCATTACAGTGAAGTAGAAGAATTTAATCAAAAAATTGACAAACAACTGAGGAAAGAAGGGAGACCATTCAATAGGTGGGTATTGCTCTTATATACTTAAAGATGTGCAGTTAACAGTTAGGTGTCCTTTTTGGTTCTTCCAAGTTTAAACCAGAAATATATATTACAGTTAAACatggtaaaatatatattttttattacttataataaatattaatctaAATTTAATTGCATAACAAATGGTTAAACTTTTGAATTCATGTACATGATTTtctagattatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0021536 diencephalon development biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034720 histone H3-K4 demethylation biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0070544 histone H3-K36 demethylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0072175 epithelial tube formation biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0035148 tube formation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052784 lncRNA upstream 91061 48894467 ~ 48907830 (+) True XLOC_025703
TCONS_00052782 lncRNA upstream 369120 48618161 ~ 48629771 (+) False XLOC_025701
TCONS_00052783 lncRNA upstream 369120 48621120 ~ 48629771 (+) True XLOC_025701
TCONS_00052781 lncRNA upstream 531334 48464839 ~ 48467557 (+) True XLOC_025698
TCONS_00052780 lncRNA upstream 555995 48439066 ~ 48442896 (+) True XLOC_025697
TCONS_00052374 lncRNA downstream 127717 49134382 ~ 49134743 (+) True XLOC_025710
TCONS_00052786 lncRNA downstream 449097 49455762 ~ 49459924 (+) False XLOC_025712
TCONS_00052787 lncRNA downstream 449168 49455833 ~ 49459924 (+) True XLOC_025712
TCONS_00052788 lncRNA downstream 483889 49490554 ~ 49506172 (+) True XLOC_025713
TCONS_00052789 lncRNA downstream 558592 49565257 ~ 49577267 (+) False XLOC_025715
TCONS_00050568 mRNA upstream 129259 48842918 ~ 48869632 (+) True XLOC_025702
TCONS_00050567 mRNA upstream 420433 48561112 ~ 48578458 (+) True XLOC_025700
TCONS_00050566 mRNA upstream 509004 48473346 ~ 48489887 (+) True XLOC_025699
TCONS_00050565 mRNA upstream 671731 48234445 ~ 48327160 (+) False XLOC_025696
TCONS_00050564 mRNA upstream 768919 48221413 ~ 48229972 (+) True XLOC_025695
TCONS_00050569 mRNA downstream 14414 49021079 ~ 49024570 (+) True XLOC_025705
TCONS_00050570 mRNA downstream 37252 49043917 ~ 49058326 (+) True XLOC_025706
TCONS_00050571 mRNA downstream 67343 49074008 ~ 49079318 (+) True XLOC_025707
TCONS_00050572 mRNA downstream 91110 49097775 ~ 49100456 (+) True XLOC_025708
TCONS_00050574 mRNA downstream 390450 49397115 ~ 49421274 (+) True XLOC_025711
TCONS_00050561 other upstream 1538288 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050528 other upstream 3363705 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050515 other upstream 4110738 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050507 other upstream 5281976 43716827 ~ 43716915 (+) True XLOC_025656
TCONS_00050506 other upstream 5284108 43714699 ~ 43714783 (+) True XLOC_025655
TCONS_00050573 other downstream 125676 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050578 other downstream 1062930 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050613 other downstream 3613393 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050620 other downstream 3822247 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050635 other downstream 5060858 54067523 ~ 54067639 (+) True XLOC_025764

Expression Profile

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