RNA id: XM_021577225.2


Basic Information

Item Value
RNA id XM_021577225.2
length 2355
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC110500077
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23710269 ~ 23732052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTGCAACAAGGGGGCTGGGCTCAATGCTGGGAATTCACGTCATTTCGCCGTTTACACATCCAAGTCAATGAGCAGCACCACGGAGATGTCCGCCTTTTAGTCCAGTCTTCCAGGAAGAGAATTAACCAACGCGTCGCCGAAATGTAGAGCACAGCACCAACAGAAAACAAAGAACTTTCACGCGTTTATGATGAACATGGTCCTATAATGGATTGATAACAAACCTTAAACGTATTTATTACGTGGCCAGTAACCCTCCAAGTCAGGGAGTCGGGTGTGGGTGTTTTTTTCTGGTTTATTTCAAAGAGGAGAACGGGAAAAGGAAAGTGGGAAGAGGAGAACTTCCTGAATTTAGCGAGACATGTCAGAATCCCCATCGCAGATCATAACCAAGGTATTTGTTGATTTTATAAAACAGAATCAAGTTCTAGGACCCCGGGGTGAGATGCGCTTGACGCAGTCGTGTTGTTGACAACTGCATCGTATGTGTTGGTAATCATCTGTTGCTGAGGGGAACGTTTCGCCGCTCTGTTGTAGACTATATCAGCGCATGCAGGAGAGGAGCTCATTCAGTCCTTCCTCCGCGAGCCCTCTGCCAAACTCCACTTCCTCCCCCGTCCATGCTCCCACAGCCAGGCCAGCCAGCCGAATGGAGGACGAGGCTGCCAGGCTGCCCGTGCACCTGCGCCTGCAGCCGGTGTTCTGGAGCAGGGAGGACGTGGGCCAGTGGTTGCGTTGGGCTGAGAGGGAGTTTGCCCTGCGTCCCAACACCAGTGGCAGTTTCCAGATGAAcggcaaggcccttctcctcctcacCAAGGAGGACTTCCGCTACCGGTCGCCCCACTCCGGGGACGTCCTGTACGAGCTGCTGCAGCACATCCTGAAGCAGAGGAAGCCGCACGCCTCCTACCCCTCCGCCTACTTCCCCGGCAACTCCTTCCACCCTCTGCCAGAGGGAGCTCTCCAGCACCACAAACTGGAAGAAACGGTACGGCGAACACCACGTGGTACAGAGCCCCAACCCCAGCACCCACCCACCATTGAGCTCCGACACCGCTCccgctcgcctccccgcctctcCCCCCTGGACTCCAACTACCCACGCCCTGGTGCCGAGGACCACCTCCAGACGTCCTCCCAGCTGCCCGACAGCAACCACCACCTGCCCGAGGACTTGTACACTCTGTCGGTGTCCCCGGCTGCCCCTAACGGCCGCTGTGCCACACCCCGCGAAGCCCCCTGCCCAGGCAGCCCCGGGTGCCAGGACGCTGCCCCCCCTCGTGTCATCCAGCTCATGCCCAGCGCCATCATGCACCCCCTGCTGCTTAGCCCAGGGCGAGGAGGTGTCGCTGGAGACTTCAGGCACGGTCGTGGGGGGCCACCACTTCAGGCCCCCCATGAAAATGGGCGTGAGGGGAAGGGCCACATCCAGCTGGCACTGGCCCACCACCAGCAGCACGCTCTACATCAGCAGGAGGAGGCGCTCTACAGGAACCACCACGTCATTGTGCCCGTCTCGCCACCAGAGGAACAGGCAATGCCCATTGGACGGATAGCAGACTGCAGGCTGCTGTGGGACTACGTCTACCAGCTCCTCTCAGACAGCCGGTACGAGAACTACATCCGCTGGGAGGACACAGAGACCAAAGTCTTCCGCATCATGGACCCCAACGGCCTGGCTCGCCTGTGGGGGAACCACAAGAACAGGACCAATATGACGTACGAGAAGATGTCACGAGCACTGAGACACTACTACAAACTGAACATTATCAGGAAAGAGCCAGGACAGAGACTCTTATTCAGGTTCATGAAAACCCCAGATGAGATTATGAGTGGACAAACTGACAGGCTGGAGCACATAGAGTCGGACACAGACGATCAAATCTACATCAAAGAGGAATGCTGAGGCCTCTGGGAAATGGAGTCCACTAAAGTGATGAACTACTACAGCCGCTGATGCCTTTCAGAAAGCTGCTCGAACAATAGTTTCAAACCAAGAGCGCCCGGACATTCACTCTATCCAAAACTCAGAGGAACTTGATGGTGACGTCTCTAGATTGCCTTTTAAAACTTTATAAGATTTTCTTTCCAGACAAATCTTATCAGTTGTTTTCTGTCTTAATGCAAGGAGTTCAAAGGACCTGGTGAAAAGTATATCTCATAAGACATTCCTTTTCCCTGAACTGCCACAGCAAATCAATCATTTCATGCTTGTCATGTCATACATTGTTGATTTTTCTTCCCCATGTGTGCATTAACTATAGGAAAATGTTGCAATTTGTGCAACTAATGGGAGGGGGTGTGTAGCTGGAACGTTTTCACCACAGAATAAATCTTTTTGATCAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1969176 lncRNA upstream 2435 23708468 ~ 23709148 (+) True LOC118942913
TU1969135 lncRNA upstream 78485 23632899 ~ 23633098 (+) True G1718742
TU1969132 lncRNA upstream 83512 23627841 ~ 23628071 (+) True G1718739
TU1969123 lncRNA upstream 89199 23619105 ~ 23622384 (+) True LOC110500071
TU1969127 lncRNA upstream 98745 23612564 ~ 23612838 (+) True G1718734
TU1969149 lncRNA downstream 1017 23733069 ~ 23791315 (+) True LOC110500079
TU1969321 lncRNA downstream 77159 23809211 ~ 23809507 (+) True G1718914
TU1969370 lncRNA downstream 111906 23843958 ~ 23844275 (+) True G1718963
TU1969371 lncRNA downstream 112359 23844411 ~ 23844769 (+) True G1718964
TU1969372 lncRNA downstream 112759 23844811 ~ 23845088 (+) True G1718965
XR_005038558.1 mRNA upstream 2422 23708462 ~ 23709161 (+) False LOC118942913
XM_021577219.2 mRNA upstream 66833 23641390 ~ 23644750 (+) True LOC110500073
XM_021577217.2 mRNA upstream 89177 23614138 ~ 23622406 (+) False LOC110500071
XM_021577209.2 mRNA upstream 201025 23505048 ~ 23510558 (+) True ada2b
XM_021577210.2 mRNA upstream 206772 23501124 ~ 23504811 (+) True LOC110500067
XM_021577232.2 mRNA downstream 958 23733010 ~ 23791307 (+) False LOC110500079
XR_005038743.1 mRNA downstream 164916 23896968 ~ 23903687 (+) True LOC118943007
XM_036957362.1 mRNA downstream 177953 23910005 ~ 23936559 (+) True LOC110500082
XM_021577240.2 mRNA downstream 244621 23976673 ~ 23985903 (+) False rpap3
XM_021577239.2 mRNA downstream 248433 23980485 ~ 23985903 (+) False rpap3
TU1968049 other upstream 454771 23256126 ~ 23256812 (+) False G1717785
TU1968048 other upstream 454771 23256366 ~ 23256812 (+) True G1717785
TU1967919 other upstream 610774 23099015 ~ 23100809 (+) False ruxf
TU1967920 other upstream 610952 23099015 ~ 23100631 (+) True ruxf
TU1967841 other upstream 688819 23014806 ~ 23022764 (+) True LOC110500038
TU1969665 other downstream 341353 24073405 ~ 24074448 (+) True G1719225
TU1969708 other downstream 403712 24135764 ~ 24136323 (+) True G1719268
TU1969963 other downstream 545779 24277831 ~ 24294797 (+) True adm2a
TU1969980 other downstream 584586 24316638 ~ 24317538 (+) True LOC110500097
TU1971493 other downstream 1879764 25611816 ~ 25612268 (+) True G1720836

Expression Profile