RNA id: XM_021577280.2


Basic Information

Item Value
RNA id XM_021577280.2
length 4941
RNA type mRNA
GC content 0.45
exon number 18
gene id mkln1
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24575808 ~ 24603395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCACTCGAGCCTTTGCTGCTTGTCATTTTCTGCAACAAGATGGCGGTCGTTCCAGAGAACAGAGTCCTCTCCTTCAGTGTTTTTAAATGGAGCTCTTATTCCTCCACATATTTACCAGAAAACATCTTGGTGGACAAACCCAATGACCAGTCCTCCAGGTGGTCATCTGAGAGCAACTACCCTCCACAGTACTTAATGTTGAAAATGGAAAGGCCAGCGATCGTTCAAAGCATCACATTTGGGAAGTATGAGAAGACTCACGTGTGCAACCTGAAGAAGTTCAAAGTGTTTGGTGGGATGAGTGAAGAGAACATGACAGAACTCCTGTCCAGTGGCCTGAAGAATGACTACAACAAGGAGACCTTCACCTTGAAACACAAGATCGACGAACAGATGTTTCCCTGCAGATTTGTTAAAATAGTGCCGCTGATGTCTTGGGGGCCCAGTTTTAACTTCAGTATCTGGTACATTGAGCTGCATGGCATAGAGGAACCTGATGTAGTGCAGCCCTGCCTTAACTGGTACAGCAAGTACCGGGAACAGGAAGCGATCCGCCTGTGCCTGAAGCACTTCCGGCAGCATAACTACACAGAGGCCTTTGAGTCGCTGCAGAAGAAGACACGCATCGCGTTGGAACACCAAATGCTGACACACCTCCACGACCGCCTGGTACTCCGTGGAGACTTTGACGCCTGTGAGGAGCTCATCGACAAAGCCGTCAAAGACGGTTTATTTAACCAGTACATCAGCCAGCAAGAGTACAAGCCAAGATGGAGTCAGATCATCCCCAAGAGTAACAAAGGTACAACCGCCCAAGAGCCAAGCCCAGATGACATGAACAGTGAGACAAACTACTCAAGTAATGAGGATGACAACAGACCAGGGATGAGGGGAGGTCATCAGATGGTCATCGATGTTCAGACAGAGACGGTGTATCTTTTTGGGGGCTGGGACGGCACACAGGACCTGGCTGACTTCTGGGCCTACAGTGTTCAAGAGAACCAGTGGGTCTGCATCTCCAGAGACACAGAGAAGGAGaGTGGTCCCAGTGCGCGGTCCTGTCACAAGATGTGCATCGACAGCCAGCGGCGGCAGATCTACACACTCGGCCGCTACCTAGACTCCAGCGTCAGGAACAGCAAGTCTCTGAAGAGTGACTTCTACCGCTACGACGTCGATGCCAACACCTGGACACTGCTCAGCGAGGACACGTCAGCCGACGGCGGGCCCAAGCTCGTCTTTGACCACCAGATGTGTATGGACTCGGAGAAGCACATGATCTATACGTTTGGCGGAAGGATTCTGATGTGTAACGGCAGTGTGGAGGACAGCAGGACGTCCGAGCCCCAGTTCAGTGGGCTGTATGCCTTCCACTGCCAGGCCGGAACATGGAGCCTGCTCAGAGAAGACTCCTGCAACGCTGGGCCTGAGGATGTCCAGTCACGCATCGGACACTGCATGCTCTTCCACACTAGGAATCGTTGTCTGTATGTGTtcggaggtcagaggtcaaagacGTACCTGAATGACTTCTTCAGCTACGACGTGGACGGGGACCATGTGGAGATCATCTCAGACGGAACCAAGAAAGACTCCGGCATGGTGCCGATGACGGGCTTTACCCAAAGGGCCACCATAGACCCAGAGCTGAATGAGATCCACGTCCTGTCTGGCCTCAGCAAGGACAAGGACAAACGAGAAGAGAACGTCCGTAACTCATTCTGGATCTACGACATCGCACGCAACAACTGGTCGTGTGTGTATAAGAATGACCAGGCGGTGAAGGAGAACCCCAGTAAGGCTCTGCAGGAGGAGGAGCCCTGTCCACGCTTCGCACACCAGCTGGTCTACGATGAAATGCACAAGGTACACTACCTGTTTGGAGGAAACCCAGGGAAGTCGTGCTCTCCTAAGATGCGTCTGGATGACTTCTGGTCCCTCAAGCTGTGTCGCCCCTCCAAGGAGTACCTGCTCCGACACTGCAGATACCTAATCAGGAAGTACAGgttTGAGGAGAAGGCCCAGTCGGAGCCTCTGAATGCTCTGAAGTACCTGCAgaacgacctctctctgaccgtgGACCACACCAACCCTGACGAGACCAAAGAGTTCCAGCTCCTGCCCTCGGCTCTCTTCAAGTCCAGCTCTGACTTCATCCCTCTGGgTTTCTCAGACGTGGACCAGACGTATGCCCAGCGCACGCAGCTCTTTGACACGCTCGTCAACTTCTTCCCGGACAGCATGACCCCGCCCAAGGGTAACCTCGTTGACCTCATCACACTCTAGCCCCGCCCCAGAACCCTACGCACCACCACCATATGCCAATAAGACTGATTGGCTGGCCCATAGCCAAACTTCATATTTTTCTACACTTGACCCATCCAAATTCAGGGGTGCTCTGCTTGCGGACTGCACTTGTTGACCCCCTCTTTAGGACGTTGGTTCTTCCACAGCGGAACTGAACTAAAAGGGAAAATGAGGGTCAGACCACTTGCGATTTAAAGGGGTTGATACTGAATGTCACTGTGtgggaaaaataaaaaaaaacacaaactcCCCCGGGCCTAATGGTCTTTGTTGAATAAACTGATTTATCAGTTTAAAATAACCCAGAACTCTGCCAAACATATCTTCTGTGTCAACTCATTTGATTTGTGAGGTTTACATGATGCTTTTACGTGCTGCGTTTGAGTTTGTTTGGCATTAGTAGCCTGTTAGATCAAGGAGGAGTCTCTCTTCCTCTTATTTTCCACTCTGCCTTGCATCCGTCTCTCtctgacactcactcacacaaaccTGCTTGTGAAAGTAGTTGTGTTACTTAATGACACCCTGTCAGCACATTGTACGCTGAATATACCTTCAACCAAGTTCATGATTTTTGCTTGCTCTGCCTGTATTATTGGTGCCATATTATATACCCCATATTTATAATTATGACGGCCATGCTGTTACACACTACGTGTCAAAATGTTAATTTTGTTATATAGAAACAATAGAATAATGATCCTAAGAGACAATATATATGTCAATTTAAATCCTatcgatgtaaaaaaaaaaaatcaatcatGGGTTTGGGGGAAAACATTGTCAAGTTGTCAAGCTTGTGATTCTGGTAATGGCTACTGTAGCTTTAGTGTGATGTAATCATGGATCTGTCACTGAGGCATGTTGGGAAATGTAGTTTCCAAGTATGAATGTTATTATTTTTAAACTCAAAACTCCCCATCTTGTAAGAACTGCAAAATGATGTTCCTGCTGTATCAGAGGGAGATTTTTGTATGTACAAACACACATCTATACTCGCATAATCTCATTGACTGGGATGTATCTTCCTTTGACGATGGGAGTTTATTTTATGGGTAAAGGAAGAATGAATGATTGCTTTCATTGAGAGAGCGCCCAGTCTCCCCCTGCAGCTATGGCCTGattactctgttctctctgtttcttaTGCAAACAGTGATGACTAGACATTCTTCAATTCTAACCTAAGGAAATACAGAACACTAGATTTCATTCTTACTCAGAATAAGGCGATAGGAGCATTCACAAGTGATCTCTAAACACCAAGTTAGCAAATGGTATCTGTCTTGTGGCTCCAGCCAAAGTTTTGATGTACAATAAATGTTTTTGATTGGTTCATAATCATTATGCTGGAACTGAGGATGCCCTTTGATatagcttgtgtgtgtttgtctcggATCGCCAGGGTATTTTGTCTAGTCCACCTGTGTAACATAACACAAACATTTGCCTCATATTGTTCTTCCATTAATCTCAGTAGGAGAGATGATTGAAGTGatcccctttcccctccttcTCAAGAATAGTAGCAGCCTTCCATTACATTGTGTATGTATTGTCTATATATTTAGCATTTTCCTGAGACAGCTGTACAGTATGCAGAGTACACTCTAGGCAAAGGCCTATGGAGTCCTATGTGAAAAAGGCCTATGTGAAATATCCATCCCCTTTGTTTTGAGATCAATCAACTCCACTATCAGATAACCAGAGATGGAGGGACTATTCACATTCAGGGAGACAAACACTTAGTGCTTGACTCCTGTCAAGGGTGGTAGTCAAACTTTAGAGATATTTTTTCTTGTTAGATCCTTATAATTCCTTGATCAAAATCCTAATCAAATTGGCAGATTGTACACTACGTCCCAATAGATTCATTACATCTGGTTTCTTCATACAGGCATACACATGAAGACATCTGCTCTTATTGTTAGAAGATGAGTGATCAGATCCGATTTCTCTGTTCGTTTGCACTCATGTCCTCAGTAATCAGTATTAGCTTAATTTGAATCCATCAGTACTGTGTGCGTTTGCTGCTTGTGTGCACGGTGCACGGTCTGCTTACAGTGTGTGAGCTTAACTAGtttgtgtgcttgtttgtgtctGTTTGCTATTGTATGTCTTCTGCTGCCATCATATTAACCTAAATAAATATTAGCTCTCTGACCTGAGATCCAGAGAGAAAGGAGTGTCATACTTACCATCATAGCTTTGTAGTAAAACCCGTTATTTAGGAAGGACTCGTTTATGGTCATTATCACAGAAGACTTTGGCGATGTTTGCATTAGTTTCTGTCAGAAAAAAATAAGCTTAAGAAAACATGAAATAAAGAGGCACCCCTggaagaaaatataaaaaaaatatatatatatatataacacaatgCCAAGTaattatttttcttatttttgggaGGGGAAGGAAATTATAATTTTCAGAAAATGATGGAATGTTGTTTTCTTCATCTGCCCCCTCTTCTCCCCAACTGGGACTCAGGAGTATGTGGAGTACTCTAGAGTGCGTGAATGAGCACTACTCTGTGGATAACGAGAATGTGTAGAGAGCCTATTGTAGAATTGCATTGTATGTAATGTACATAACGAATAAAGATTGTATTTTGTTCAGGTTTTCATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1970209 lncRNA upstream 10468 24564257 ~ 24565340 (+) True G1719705
TU1970154 lncRNA upstream 80284 24495298 ~ 24495524 (+) True G1719657
TU1970144 lncRNA upstream 89513 24485663 ~ 24486295 (+) True G1719647
TU1970140 lncRNA upstream 102449 24473049 ~ 24473359 (+) True G1719644
TU1970130 lncRNA upstream 117775 24457647 ~ 24458033 (+) True G1719634
TU1970320 lncRNA downstream 106520 24709915 ~ 24717545 (+) False G1719795
TU1970319 lncRNA downstream 109272 24712667 ~ 24717545 (+) True G1719795
TU1970274 lncRNA downstream 139324 24742719 ~ 24744880 (+) False LOC110500114
TU1970278 lncRNA downstream 139324 24742719 ~ 24744880 (+) False LOC110500114
TU1970279 lncRNA downstream 139796 24743191 ~ 24744880 (+) True LOC110500114
XM_021577274.2 mRNA upstream 161629 24405619 ~ 24414179 (+) False asb13a.2
XM_021577275.2 mRNA upstream 161685 24405619 ~ 24414123 (+) False asb13a.2
XM_021577273.2 mRNA upstream 164737 24405619 ~ 24411071 (+) False asb13a.2
XM_021577272.2 mRNA upstream 170270 24401158 ~ 24405538 (+) True asb13a.1
XM_021577270.2 mRNA upstream 174798 24389312 ~ 24401010 (+) True LOC110500103
LOC110500922 mRNA downstream 31282 24634677 ~ 24637555 (+) True LOC110500922
XM_036956500.1 mRNA downstream 49832 24653227 ~ 24657324 (+) True LOC110501038
XM_021577290.2 mRNA downstream 56432 24659827 ~ 24740167 (+) False LOC110500114
XM_021577289.2 mRNA downstream 56436 24659831 ~ 24744884 (+) False LOC110500114
XM_036957398.1 mRNA downstream 117573 24720968 ~ 24723685 (+) True LOC110500113
TU1969980 other upstream 258270 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 281011 24277831 ~ 24294797 (+) True adm2a
TU1969708 other upstream 439485 24135764 ~ 24136323 (+) True G1719268
TU1969665 other upstream 501360 24073405 ~ 24074448 (+) True G1719225
TU1968048 other upstream 1318996 23256366 ~ 23256812 (+) True G1717785
TU1971493 other downstream 1008421 25611816 ~ 25612268 (+) True G1720836
TU1971515 other downstream 1032940 25636335 ~ 25636589 (+) True G1720853
TU1971779 other downstream 1434907 26038302 ~ 26041843 (+) True G1721084
TU1971907 other downstream 1726379 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 2218252 26821647 ~ 26821935 (+) True G1722079

Expression Profile