RNA id: XM_036957398.1


Basic Information

Item Value
RNA id XM_036957398.1
length 2463
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110500113
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24720968 ~ 24723685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAACATTGTGATTCTAGGAAGAGTAATGTAAAAGCTGTAGTGACTTTAGTCCTCGTTTATTCAACACTGTTTTAATCAATATGACGATCAGTTACAGCTCAGCCGTGTAAAGGGTTAACTGTTCCAGGAAGAGAATCACACAGCAGTATCTGGTGGGGAGGAGCATCACTATCGTCACTTTGTTGAACTGAAACTAAAGTAGAGAGACGTACAGTATATTGTTTACGGGACCAAAATCTCCAGCACTTCAGAAATCTACATGTTCAGGCTATACGCTTACTCTCCTACCCTTTGACACCACAAACAGAAAGGACAGAGATCCACAAAAACATCCAGATATGGCCACCTCCTGCAGTCTCCTGTCTGAAGAGCAGTTCCTGTGTTCTATCTGTCTGGATGTGTTCACTGAGCCCGTCTCTACTTCATGTGGACACAACTTCTGCAAGGCCTGTATCACAAAGTACTGGGATAGGGATGACCTGTGCCAGTGTCCCATGTGTAAAAATACATTCGATAAGAGACCAGATCTGTTCGTCAACACTTTCATTTCTGAGATGGCTGctcagttcagacagacagtTGAAGTGAAAGCTACCAGCAGCCCGGACCAATGCTCTGCCATGATAGTAGAAGTGTCCTGTGACATCTGCACTGGGATGAAGCTCAAGGCCCTGAAGTCCTGTCTGGTGTGTCAGAcctcttactgtgagactcaTCTGGAGCCTCATCAGAGAGTCGCAGCCTTAAAGAGACACAAGCTGATCAACCCTGTGGAGAACCTGGAAGACAGGATGTGTAGGAAGCATGAGAGACCTCTAGAGCTGTTCTGTAGGAGTGACCAGACATGTCTTTGTGTCTTGTGCTTGAAAGCAGACCACATGACTCATGACACTGTCCCTCTAGAGGAAGAGTATGGAGAGAGGAAGGCTCAGTTGGGGAAGACTGAGGCAGAAGTGCAGCAGATGATCCAGGAGAGACTGAAGAAGGTTCAGGAGATCAAACACTCAGTAGATCTCagcaagagagaggcagagagagagagatcagacagtgtacaggtCTTCACTGCTCTGGTTCGCTCCATTGAGAGAAGTCAGGCTGAGCTCATTGAGGTGATTGAGGAGAAACAGAAAGCAGCAGAGAGGCAGGCTGAAGGGCTCATTAAAGAGCTGGAGCAGGAAatcactgagctacagaggagaagcactgagctggagcagctctcacacactgaggaccacctccacctcctacaGAGCTTTCCATCCCTCTGCACCCCTCCAGACACCAAggactggtctgagatcagtgtTCAGAGTGATATGTGTGTGGGGACTGTGAGGAGAGCTGTGTCTCAACTGGAGGAGACACtgaataaagagatggagaagctGCCTGAAGTCAAACTGAAGAGGATTCAGCAGTATGCAGTGGATGTGACTCTGGATCCTGATACAGCACATCCCTGCCTCATCCTGTCTGAAGATGGGACACAGGTGAGAGATGGAAACACAGAGCAGGATCTCCCAGACAAGCCAGTTAGGTTTTCCAAATGTCTCTGTATCTTGGGAAAGGAGGGCTTTTCCTCAGGGAGATTCTACTATGAGGTGATGGTTAAGGGAAATACTGAATGGGTTTTAGGAGTGGCCAGAGAGTCCATCGTCAAGAAGGGGGATATCACACTGAGCcctgagaatggatactggacTGTATGGCTGAGAAAAGGAAATGAGTACGAGGCTCTTTCTAGCACCAGTGTCCTGCTCTCCCTGAGAGAGAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCAGGTCTCCTTTTAtgatgtggaggccaggtctctTATCTACTCTTTCACTGGCTGCACCTTCACAGAGAAACTCTATCCATTCTTCAGCCCCTCTAGCAATGATGGTGGTAAAAACTCTGCCCCTATGATCATCTCTCCTGTCAATCACACAACATGACGTTTAACCTGAAAATGTACTGAAATGTGTCAATTTCGTCTGTTGTCCTACATCAGAGAACATTTCAATGTAATATTCCTACTGACATGGTTGTTGTTTGTTATCATCAGCATCATGTCAGTCTGTTAGACATGATGAGTAGCCTACGGTATGCAGCAGCATTGTAAGATATGAAAACATCTCTCCAGGCTCATACCGAGGTATGATTCATATCTGGGAGTTACATTTCAGAGGAATTTCTGATCATGAGATAATTCAAGcaatatgtttgttttttaagcTCATGTATTGTTTGCACTGTATATCTCTGTGGATCCACCTATAATGAACTGGGATGTGCCTGGAGTAAAATTCAGGATTTTTAGAAAATGAAATCCAGTTGAATATTGACCAAATTGGAATTCTTTCTCGTAGTCCTGCTGTCCCCGATGTTTACAGTAGTGATGGCTATGACATCCGTTATACAAATAAAGTCACCTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1970320 lncRNA upstream 3423 24709915 ~ 24717545 (+) False G1719795
TU1970319 lncRNA upstream 3423 24712667 ~ 24717545 (+) True G1719795
TU1970199 lncRNA upstream 126578 24530156 ~ 24594390 (+) True G1719695
TU1970209 lncRNA upstream 155628 24564257 ~ 24565340 (+) True G1719705
TU1970154 lncRNA upstream 225444 24495298 ~ 24495524 (+) True G1719657
TU1970274 lncRNA downstream 19034 24742719 ~ 24744880 (+) False LOC110500114
TU1970278 lncRNA downstream 19034 24742719 ~ 24744880 (+) False LOC110500114
TU1970279 lncRNA downstream 19506 24743191 ~ 24744880 (+) True LOC110500114
TU1970336 lncRNA downstream 31656 24755341 ~ 24756316 (+) True G1719811
TU1970402 lncRNA downstream 108715 24832400 ~ 24833158 (+) True G1719862
XM_036956500.1 mRNA upstream 63644 24653227 ~ 24657324 (+) True LOC110501038
LOC110500922 mRNA upstream 83413 24634677 ~ 24637555 (+) True LOC110500922
XM_021577280.2 mRNA upstream 117573 24575808 ~ 24603395 (+) False mkln1
XM_021577294.2 mRNA downstream 63795 24787480 ~ 24791567 (+) False LOC110500118
XM_021577293.2 mRNA downstream 63802 24787487 ~ 24791567 (+) True LOC110500118
XR_002470065.2 mRNA downstream 1045201 25768886 ~ 25772881 (+) True LOC110500123
XM_021577303.2 mRNA downstream 1148136 25871821 ~ 25875841 (+) True LOC110500127
XM_036957445.1 mRNA downstream 1168188 25891873 ~ 25907486 (+) False LOC110500124
TU1969980 other upstream 403430 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 426171 24277831 ~ 24294797 (+) True adm2a
TU1969708 other upstream 584645 24135764 ~ 24136323 (+) True G1719268
TU1969665 other upstream 646520 24073405 ~ 24074448 (+) True G1719225
TU1968048 other upstream 1464156 23256366 ~ 23256812 (+) True G1717785
TU1971493 other downstream 888131 25611816 ~ 25612268 (+) True G1720836
TU1971515 other downstream 912650 25636335 ~ 25636589 (+) True G1720853
TU1971779 other downstream 1314617 26038302 ~ 26041843 (+) True G1721084
TU1971907 other downstream 1606089 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 2097962 26821647 ~ 26821935 (+) True G1722079

Expression Profile