RNA id: XM_021577294.2


Basic Information

Item Value
RNA id XM_021577294.2
length 1799
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110500118
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24787480 ~ 24791567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTATATAATAAATGTTGAACATTTACGTCTAGGATATCAAATAGGCACTGAAGCCTATGGTTAGGACCAAGAAATGTGAAATATGAATTCACACATTTTGATAGTTTGTGATTTTGCATTGATGCGCTTTTTATAAAACAGCTATTCTGAAATTGTATTGTGTTATGACATAATAAACGCAGTAGTTGCAGTCAATATACAGTTAATTATCCATTCACCCCGCAGGGAAGTATGATAATGTTTCCGTTTTGAGTTTTGTCACCCCGAAACAGTAGAAGGCGCTATACACCAATGTTGGTGTTCATCCTATGACCCAAATGTTGACGCTAGCACAGTCAAAACATGGCTCGAAATTTGTTTTATCGTGCTGCTAATATTGTCCAACTCAGCAGGTTTACACTTATAGTTGGGTCAAAGTCACTTTGTACGCAAATTCCAGCGGAGCCACTGACTGTCAGACAGCAAAACAATGGAATAAGGAGTATAACCTTGAACAACCCGAAGAAGAGGAATGCCCTGTCTCTGTCCATGCTGGAATCACTAAGAGGCAACATCCTGGCTGACATCGACGACCTCAGAGTCATCGTCATATCAGCTAAGGGTCCAGTGTTCTCCTCTGGGCATGACCTGAAGGAGCTGACATCAGCACAGGGCAGAGATTACCACTTCAAGGTGTTTCAGGCCTGCTCAGAGGTTATGACCCTGATACAAGACATTCCTGTGCCTGTGATTGCCATGGTGAATGGGGTTGCCACCGCAGCAGGATGCCAGCTTGTTGCCAGTTGTGACATTGCCGTGGTGACGGAGAAATCCACCTTCGCCACGCCAGGGGTCAACGTGGGTCTGTTCTGCTCAACACCAGCCGTGGCAATAGGAAGAGCTGTCCCCAAgaagGTTGCCATGGAGATGCTGTTCACAGGAAGCCCGATCTCGGCTCAAGATGCTTTGCTGCACGGGCTGGTCAGTAAGGTGGTTCCTGAGGAGCGTCTAGAGGAGGAGACGTTAGCCATCGCACGACAGATGGCCCAGGGTCGGGATGCGGCCTACGCTATAGCCTCTCGTGTCATGGTGGATAACCTGGCTCTCAGAGACGGACAGGAGGGGATACGGGCTTTCATAGAGAAACGGAAGCCTGTATGGACAAACAAAGCAGAGAAGGCCCATGATGAGTGATATCTGCTGGGCTGGCCTACCATGGCCTGTGAAGGGTCAGCAGCCTCTGGGTTGGAGAGGGAGCCTGTGGATGGTTGAGGTGTTAAACTTGCCCCCAGTTGGACCTGAACCCATCACAGAACACAGAAGTGCTCGAGGAGGACATTTTGAAATTAAATCCCTGTTGATTGTTGTCGTGATCTGATGAAGGGATACTGCAGGGCTGTCTTCATGTATGCCCTTAGGAGGGGGTGAGGTGAAGGTTTTTGGAAAGGTAGATACTTGAGATGCACCAATGGTCAAGGGACTCACAGAGGACATAGATTGGGCACTTCTTGTGACAGAATGTACATGTTTAAAGGGGCATTCTGCAGTTGAAACAATTACAAAGCTGCTACtgatttggtaaaaagctgatgggatgggactggagaaatgtaactactctaaaattcatagacagaggactgaccatccatgagataCAAATtatatgttttgaggctatacattgTTTACAAAGGTGTAAAACAAGCTTATTTGTATTTCTGATGGGGTAATAAGTCATGAACTTAAGCTCATGAGGAATGTATTAAGTTTTATTCTTCaaaaatcaatgggtatataaagtgcattcggaaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1970336 lncRNA upstream 31164 24755341 ~ 24756316 (+) True G1719811
TU1970274 lncRNA upstream 42600 24742719 ~ 24744880 (+) False LOC110500114
TU1970278 lncRNA upstream 42600 24742719 ~ 24744880 (+) False LOC110500114
TU1970279 lncRNA upstream 42600 24743191 ~ 24744880 (+) True LOC110500114
TU1970320 lncRNA upstream 69935 24709915 ~ 24717545 (+) False G1719795
TU1970402 lncRNA downstream 40833 24832400 ~ 24833158 (+) True G1719862
TU1970355 lncRNA downstream 83972 24875539 ~ 24935910 (+) False G1719826
TU1970359 lncRNA downstream 83972 24875539 ~ 24882258 (+) False G1719826
TU1970357 lncRNA downstream 88438 24880005 ~ 24882258 (+) True G1719826
TU1970436 lncRNA downstream 91377 24882944 ~ 24883900 (+) True G1719893
XM_021577289.2 mRNA upstream 42596 24659831 ~ 24744884 (+) False LOC110500114
XM_021577290.2 mRNA upstream 47313 24659827 ~ 24740167 (+) False LOC110500114
XM_036957398.1 mRNA upstream 63795 24720968 ~ 24723685 (+) True LOC110500113
XM_036956500.1 mRNA upstream 130156 24653227 ~ 24657324 (+) True LOC110501038
LOC110500922 mRNA upstream 149925 24634677 ~ 24637555 (+) True LOC110500922
XR_002470065.2 mRNA downstream 977319 25768886 ~ 25772881 (+) True LOC110500123
XM_021577303.2 mRNA downstream 1080254 25871821 ~ 25875841 (+) True LOC110500127
XM_036957445.1 mRNA downstream 1100306 25891873 ~ 25907486 (+) False LOC110500124
XM_036957447.1 mRNA downstream 1100306 25891873 ~ 25907486 (+) True LOC110500124
XM_021577308.2 mRNA downstream 1140023 25931590 ~ 25977279 (+) False sfmbt2
TU1969980 other upstream 469942 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 492683 24277831 ~ 24294797 (+) True adm2a
TU1969708 other upstream 651157 24135764 ~ 24136323 (+) True G1719268
TU1969665 other upstream 713032 24073405 ~ 24074448 (+) True G1719225
TU1968048 other upstream 1530668 23256366 ~ 23256812 (+) True G1717785
TU1971493 other downstream 820249 25611816 ~ 25612268 (+) True G1720836
TU1971515 other downstream 844768 25636335 ~ 25636589 (+) True G1720853
TU1971779 other downstream 1246735 26038302 ~ 26041843 (+) True G1721084
TU1971907 other downstream 1538207 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 2030080 26821647 ~ 26821935 (+) True G1722079

Expression Profile