RNA id: XM_036957406.1


Basic Information

Item Value
RNA id XM_036957406.1
length 6626
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC110501039
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24875385 ~ 25103277 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGAACGTGTGTTTCTGTAGTGCGAATAGGAACGAGAGAGCGCGAGGaacgagagggggagagcgagaccgagagcaGAAAGCCGCCGCTTGTTGTGAAATAGAAAAAGAGGGTGAACAAAAAAAGGATCGGAGGAGAAAAACCCAGCGGTtgggagcagagcagagatgTTGGAGCTCTCGTCCGAGCTGGGCTttgtgcagagtgtgtgtgtcgaCGGCATATGCTGCCCCCCCTCTGCACCCCACCCCACCGCCGGATCCACGAGGGCCGACGAGCTgctgctgagTAACGGCACGGCCGGGAAGATGAACGGTGCGTTGGAGCATTCGGACCAGCCCGACCCAGACGCCATCAAGATGTTCGTGGGCCAGATCCCTCGCTCCTGGTCAGAGAAGGAGCTGAAGGAGCTGTTTGAGCCCTATGGCGCCGTCTATCAGATCAACATCCTCCGAGACCGCAGCCAGAACCCTCCACAGAGCAAAGgGTGCTGTTTTGTCACGTTTTACACACGGAAAGCTGCCCTTGAAGCCCAGAACGCACTGCATAACATAAAGACCTTAACAGGGATGCACCATCCCATTCAGATGAAGCCTGCAGACAGTGAGAAATCAAACGCGGTGGAGGACAGGAAGCTGTTCATCGGCATGGTGTCGAAGAAGTGCAATGAGAACGACATCCGAGTCATGTTCTCTGCGTTCGGACAGATCGAGGAGTGCCGGATCCTGCGAGGGCCCGACGGACTCAGCAGAGGCCTCAGCCAGCGGGAAGCCAACGTTAAGGGATGTGCGTTTGTCACCTTTTCTACCAGGGCTATGGCACAGAATGCAATCAAAGCCATGCACCAGTCTCAGACTATGGAGggcTGCTCGTCTCCCATCGTGGTGAAGTTTGCCGACACGCAGAAGGACAAGGAGCAGCGACGCCTGCAGCAGCAGCTGGCTCAGCAGATGCAGCAGCTCAACAACGCCACCACCTGGGGGAGTCTGACAGGGCTGGGCGGCCTCACCCCGCAGTATCTGGCTGTAAGAGGACACGCCGCGTCGCCCACCCCTTACTGCAGCCCCGCAGCCAACGCATCCGTCGCCGCCGCAtTGCTCCAGCAGGCCACCTCCTCCAGTAACCTTGGAGCCTTCAGTGGGATCCAACAGATGGCAGgtatgagTGCTCTGCAGTTGCAGAACCTGGCCACTTTAGCAGCGGCAGCAGCGGCGGCCCAAAACTCAGCCGGCCCCAACGCAAACCCCCTGTCCTCCAACGCGGCCTCCCTCGGAGCGCTGGCCAGCCCAGCGGGCCCCACAGCCAACTCCTCGGGCATGAACTCTCTGACCTCTCTGGGCACTCTACAGGGCCTGGCTGGCGCCACCATGGGTCTGAACAACATTAATGCACTAGCAGGTAGCGTCAACATTGCACAAATGCTCTCAGGTATGGCGGCCCTGAACGGAGGCCTGGGCGGCGCGGGGCTGACCAACGGCACGGCGGGCACCATGGACGCGCTCACACAGGCCTACTCAGGGATCCAGCAGTATGCAGCCACAGCCCTGCCCACCCTCTACAGCCAGTCCCTGCTGCAGCAGCAAGGTGCCGCCGGCAGCCAGAAAGAGGgGCCTGAAGGTGCCAACCTGTTCATCTACCACCTGCCCCAGGAGTTTGGGGACCAGGACATCCTGCAGATGTTCATGCCTTTTGGAAACGTGGTCTCTGCCAAAGTCTTCATTGACAAACAGACAAACCTGAGCAAGTGCTTCGGCTTCGTCAGCTATGACAATCCCGTGTCGGCGCAGGCAGCCATCCAGGCCATGAATGGCTTCCAGATCGGCATGAAGAGGCTGAAGGTGCAGCTCAAGCGCTCCAAGAACGACAGCAAACCATACTGATCTTAGCACTAGGGCCTATCTGCTCCCATGTTACCACTGCTAGGAACCCATCTCCATGCCTGTTAGCTCATCGTTTGCCTAGCATGTCTCTGTGGCCTGGCGTCCAAAAACAAAATTATACAAAAAAAGTCTCATCGTCCCGTCATTGTTTTCTGATGTCTTTTCTGAGCTCACCTGATCATAACCTGGTCTCCGCCTACTGACCTTTTGAACTTAGCTTGACCTTTTTTGGACTTTTTTTGCATGTGACCTCATGTTCTATTTTGGGGAGGTGGGGTGGATGGGGTACATTGTGGATgaaggagggcgggagggaggaggggggggggggggggggggcgaatcAATGTGAAGAAGTATAGCATCATTCATACAAAAAGACTGAACTCTTACagacaaaaacaaaacgtttCTTTTTAAAAACAGAAAAACCCCGTGGCAAAATGATTTCCCTTAGATTCATTTAGTTATGTTTAGTTTCCTTCTTTTATGTTGGGTTTCATTTTTTGCTCCTTTTTTCAGTTAAAGTAAACTTGAAAGTTCAGCACAGGGATTGGCATGCTGTCTTGTTTCTGGCTCCACTGGCAATATGAGGCCAGAAGCAGACACTGTCGGTGTCCATGAAAAATAGACTACTTCCAAACAGTTCTGAATAAAAACTGTCTGATCAATATTAGACTCTCTCAGAGCTCTGtaattgtttttacatttttcagGCAGTGTAAAGTTTTTTGATAAGGCCATTTTAAGTGGCTCTGTTTCTCATTAAAGTATATATAGAACCACTTTTTTCTAGAGTAGTTTAAGGTATTACaaaaatgtcaacaaaaaaagACTTGCCCTGTTTGGGGGGAGAAATGCTACCTACGTGTCACCTTTTGCTGAACTGACTCACAGATAGACAATCCGTGGTTTAAATGCACATGATAAAGAAATGACCTATATTTTCTACTGTTTAAATTATAGAGCGAAAAAAAAAGAGGAAATGACCTGTAACCCGCGTTAACGTTGGTGCTTCTTGTGAGTTTAGTTTTGGTTTCATTACAAGTCTAACGGTCTTAAGTGTCTCATGTTTTTAAagagaagacaaaaaaaaaaaatctgtttactTGAACAATAGACAAAGCCTTTCATATGAATACTATTATAATTGTTTTGTCTTTTTTATTTTAAGCAGTCCCGATTTGCTAAATTTCTTGTTGGGTAAATTAGCTATATAAAattcctaaaaaaaaaatatatatgaatatataaatatatatatatataacatgtcGGCTTGTGAAGCATCAATGTTAATATGATTTTATTTCTATCGTGGGAAACAATATTTAGATGTGTTTTGTTGTTCATTATAATGTAATTTTCTTTTCTTATAAAGAAAAAAAAGACAAGATCGGTGGAGTTTAGTGCCAAAACTTGAAGGTACATTCTGTCTATAGCGCGTCAGTGTATTTCTGGTCAAATTATTTGATAACATGGGTATTTTATTAAGTGTTTTGTATGGATCCCTCATATGTAAAAATATAGATTTAAAAAAAGAGTTTGTTAACTTGCTATTCTGTGGTCTTGTTGCCTGAAACTGTTCATGTTTTGCTTTTCTTCGTAAAGATGTAAAAAGTGCCCatgtgtcatatatatatatatatacacacacacacactcacacactcgcacgtctacacacacacacacatgcacacacacacacacacgcagacctcACAGTTGACTTTACTTTGTTGTTGTGTATGAGAGCCCCTGAGTGTGAGAGCCTCTACAGTCCAGTTTCCATGTTCCTGCCCACCAGTCTTTACATTACTGTTCACACGCTCTCTCTATCAACacgtcactcacacacacagttctcaCATGAGCCATTATACCGAGAATTCTGCAAAGCCTTATCACAAGCCCTTACATGAACACTCACACTCACATTCTCTCCAAACACTCTCGCTTCATCCTTTCGCTTTGACAAATGTCAAGCCTTATTTTAAGATTTTCATCTCTCTCATTATAACCTAAATCAAGGACAAGTGTTTAGTTGAAGTTGCTACAGACTGGGAAGGGGCATCGTTATTTGCTGGTCATGTATGTGTCACCTCAAACAACATGAATGCGTTGCTTACATGAGGTAAGTGAAGGGCAAGACTTTCCCACACAAGCCTCAAACCCTCCCCAGATCCAGACAAAACAACGTTGATAGTACAGAATGATTTTCAGCTGTTTGGTTTTGTTGTTTCTTCCATTGACAGTTTCTTATGGACATGTACCAGTATTGGTAATTACACCATTATTACAGAAATATGTTTGCCCTGTTGTAAAtgttgtgtaatgtagtgtaactGGCCAAAACAGTGTTGAGATGCCAAAGTATTACGTCAAGATTCTCATAGTCAATCCGTTTACATGACACAATGCTGTCTGTCCGTCAGTCTCAGTATTCTGTAAAACTGCCCCGATTCCCTTCCCTGGAAACCTAGTTTACGGTCTGCAAAACGCAGCACTATTTTATACAAAAACTCACCAGTCGCCTTAACCAGGGAGTGTTGTATCGAAAGACTTGTCTAATCGGATCTAAACATCTGTATGTAAGTAGGTGGTGTTTGCCAAGTCTAagtgtactgtgttgtactgtacctCCAGCTTCTCCAACTCTGGGTAAGCGTGTCACCATTTTGTCCCACAACGCAGAGTAGAGAGGCAAAATGGCCACCTTCTTATTTAGTGTGGCTCTCAAACTGACAACCAAGGAAAATAAAACAGTTTATTGTTATCCGTTTCATCGTCTTTTTACAGAATAACAAGGTTTATTTGAAATACCGAGCCAAATGGAGGAGGGTTCGTAAAGTGCAGACAGGGGAAATAAAACTAGAGACAGCAAAACAACAGTCTCAGCCAAGAGGCAGAGCCCTCTTACCAATGCCAAACTTCAGTTGAGTCCATAGCATATCAAATTGACATTTCCTAAAGCAGTAATgagtcatttttatttatttgacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggccaaggaacagtgggttaactgccttgttcaggggcagaacgacagatttgtaccttgtcagctcgggggtttgaacttgcaacctttcggttactagcccaacgctctaaccactaccctgccgccccaaatgccATAAAAACAGCTCTAACTACCTGCACAAAAGTAATCAGGATTGCCAATATGTCATACGACACAGTGTTAATAGATCATTTTGTCATTAACGTGAGCTGATCGTAGTCTCCTTATAAGACAGCTGCCCAATTAGGCCTCAGACCCTTCAGGAATCCTCTCTGTGAGGAACATCTTTGCACTCTAAATACATTAGGTAACATaaacagacaacagagttacatcAACTCACGGTGCAGCATAATGAGTTGCAGGCGTAGAGGCTTTGGTTTTCGGGTTCATCCCTTAGCCAACTACTTATACTTTGGGAGATGGTAATGTATGGacatgtgtgtgtttttacaaAACTTAAGCATCCCCCAATTCCCAAatctctcactcacacatacacacacagcgcGGGTTGGCACAGTGTAGTCTGATTGAAGTTGCAGTCTGTTAGATGTTTCTGAAAAAGCACAAGAGTGTCCTCCGCAGACAGACCGTTAGACAGGAATGTCTGTTGAGTGCCTCACATCTCGGGGGCTGTCATCACCGATGCTTGTTGTAATCTTTCAATCTTGTCACTGTTCCGTTCTCTGTTCTCTTACTTTCTTAATTATCTAAAGTGCTATTTATCAAACAATTACATTTTAAAGGAAAAAAACAACTTGTAGTTTCTTTGCATTTTGGCTTATTATGTCTAGTTTTGGGGGGGAAatgtttgttttctctctctttctgtgccgTAAAGAGCTTGTTGTCTGTAGATTAATATAATTTTGTTTGATTCTAAAGGATTTCAATAGTTTTAAGTATTGTCTTGAGAGAAGCCAAAGTCAGTGCATTTCAGTGGATTCTGTAAGCGTGATGTATGTTTGTTTGACAACACTTCGAAATCTGTCATTGGATGGGATTGGAAAAGTACAAAAAATGCAGGCTTTCCTATTTCTACAAATGATTGTACTTATGCATTTTGTACCAGTGAAACTTTTTATACTGGAGAttaaaggaaacaaaaaaaactatTAGAAAAACAAACCTGTCTGGCCTCATGATGTGGCCTGACCTTTGTTGACTGGTTCCCCGAGTATGATTTATAGCTGGCATCAAGAACGTTGTCTTTTAATATACGATTTTCTAGAAGAACTTTGGCTTGGTTTCTTTAATTAATTAACTCCTTAATTTTCCTTACTTCAGTGTTGTTATTTTCGCAAAGAGGGGTTAGGTGAGTGTTGGTTTCTTTTTGGCTTATACATGGTTATAGCCATTTgtctatacaaaaaaaaaaaaacggtaaGTTTCATTTAACTTCTGTATTGTGACGTCTACATGATAAGACAATTAGGAATATAAATATTTAGTCACCTTCAGTGGATTAATGTATTAGTTTAATAAAAAGATAAACTAATTAGAGGTTTTTGCTTTTAACTGTTGAGATTTTTCTGGTTTCTCTGTCCCCTGTGAACTAACTGTGTAGCTGAAGCAGTCAGAATTATTTTTGTAAACGTATGTTCTTGTGTGATGCAGTTATTTGCTTCTGTCTCCGATATTAAACCATTTTTCCTAATACtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1970824 lncRNA downstream 42252 24832774 ~ 24833262 (-) True G1720233
TU1970789 lncRNA downstream 99430 24775608 ~ 24776084 (-) True G1720205
TU1970770 lncRNA downstream 129397 24745891 ~ 24746117 (-) True G1720186
TU1970740 lncRNA downstream 158101 24714826 ~ 24717413 (-) False G1720172
TU1970933 lncRNA upstream 14659 25035909 ~ 25092532 (-) True G1720334
TU1970950 lncRNA upstream 65385 25086635 ~ 25087967 (-) True G1720349
TU1970953 lncRNA upstream 71539 25092789 ~ 25093031 (-) True G1720352
TU1970800 lncRNA upstream 81031 25102281 ~ 25103258 (-) True LOC110501039
TU1970962 lncRNA upstream 84904 25106154 ~ 25106389 (-) True G1720361
XM_036957399.1 mRNA downstream 17574 24793606 ~ 24857940 (-) True LOC110500116
XM_036957402.1 mRNA downstream 17575 24793606 ~ 24857939 (-) False LOC110500116
XM_036957400.1 mRNA downstream 40232 24793606 ~ 24835282 (-) False LOC110500116
XM_036957401.1 mRNA downstream 51382 24793606 ~ 24824132 (-) False LOC110500116
XM_036957405.1 mRNA downstream 88067 24754781 ~ 24787447 (-) True slc41a2b
XM_036957438.1 mRNA upstream 735541 25756791 ~ 25768759 (-) False LOC110500122
XM_036957440.1 mRNA upstream 735541 25756791 ~ 25768764 (-) False LOC110500122
XM_036957443.1 mRNA upstream 735541 25756791 ~ 25768765 (-) False LOC110500122
XM_036957442.1 mRNA upstream 735541 25756791 ~ 25768766 (-) False LOC110500122
XM_036957439.1 mRNA upstream 735541 25756791 ~ 25774063 (-) False LOC110500122
TU1969894 other downstream 730166 24137726 ~ 24145348 (-) True G1719407
TU1969801 other downstream 809164 24065137 ~ 24066350 (-) True LOC110500092
TU1969803 other downstream 831886 24041833 ~ 24043628 (-) True LOC110500089
TU1969104 other downstream 1292664 23582575 ~ 23582850 (-) True G1718713
TU1969100 other downstream 1298764 23574926 ~ 23576750 (-) True LOC110500069
TU1972422 other upstream 1280492 26301742 ~ 26304793 (-) False LOC110500148
TU1972423 other upstream 1283605 26304855 ~ 26310572 (-) True LOC110500148
TU1974296 other upstream 2904167 27925417 ~ 27928014 (-) True LOC110501044
TU1974378 other upstream 3061563 28082813 ~ 28103013 (-) True LOC110501045
TU1974478 other upstream 3209273 28230523 ~ 28230880 (-) True G1723535