RNA id: TCONS_00050579


Basic Information

Item Value
RNA id TCONS_00050579
length 593
lncRNA type retained_intron
GC content 0.45
exon number 2
gene id XLOC_025717
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50069204 ~ 50075190 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGCACTGGATGCACCTCACCGTACAGCAGCACAGCACAGTGTAAGTTCTGACATATGGAATATGGCCCttgaatataattgtttaatattcaGCAAAAGTACATTAAATATCCTTTATGCAGTAGATCATGCTGCTCTCACCAGCAGCTGAGCGGAGTCAGGGCAGTTTACTGTCAGTAATCTGGGAGATACTGAAGGATCAGTCTCATCGAGAGCTGTTTGGCCTTGAGCTGGGATCTGGCACAGGGCAGCATGTGGTGCATTTTGCTCAAGAAATGCCATTTGTGACATGGCTACCTTCAGACACCAAGGAGGAATCACGAAACAGTATCAGAGCTTACATTGAGGCCACAAAGGCAAAAACAGTGCTGGAGCCGGTGCATCTGGATGCCAGTGAACCCTGGGACAAATGGGCAGGACTTCCACAAAACTCCTGCGATATAATACTAGCAATCAACCTGCTTCAATACACCCCCTTCAGCACTGCAGAGGTATGATGTCAATATACATGCATATTACCTATAACATACATTTACACTGATCAGTCACAACATCAAAACCACTGAAGTGATATGCTGCTGAAGTAATAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-116 Orthologous to human METTL26 (methyltransferase like 26).

Ensembl:

ensembl_id ENSDART00000154502

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052790 lncRNA upstream 308914 49753768 ~ 49760696 (+) False XLOC_025716
TCONS_00052791 lncRNA upstream 308914 49753845 ~ 49760696 (+) True XLOC_025716
TCONS_00052789 lncRNA upstream 492343 49565257 ~ 49577267 (+) False XLOC_025715
TCONS_00052788 lncRNA upstream 563438 49490554 ~ 49506172 (+) True XLOC_025713
TCONS_00052786 lncRNA upstream 609686 49455762 ~ 49459924 (+) False XLOC_025712
TCONS_00052792 lncRNA downstream 216490 50286780 ~ 50288488 (+) False XLOC_025719
TCONS_00052793 lncRNA downstream 216543 50286833 ~ 50288488 (+) True XLOC_025719
TCONS_00050589 lncRNA downstream 466837 50537127 ~ 50552748 (+) True XLOC_025721
TCONS_00052794 lncRNA downstream 725031 50795321 ~ 50796217 (+) True XLOC_025723
TCONS_00052795 lncRNA downstream 738347 50808637 ~ 50809193 (+) True XLOC_025724
TCONS_00050576 mRNA upstream 444932 49576662 ~ 49624678 (+) True XLOC_025715
TCONS_00050575 mRNA upstream 521381 49521106 ~ 49548229 (+) True XLOC_025714
TCONS_00050574 mRNA upstream 648336 49397115 ~ 49421274 (+) True XLOC_025711
TCONS_00050572 mRNA upstream 969154 49097775 ~ 49100456 (+) True XLOC_025708
TCONS_00050571 mRNA upstream 990292 49074008 ~ 49079318 (+) True XLOC_025707
TCONS_00050581 mRNA downstream 84955 50155245 ~ 50178302 (+) False XLOC_025718
TCONS_00050582 mRNA downstream 84955 50155245 ~ 50266089 (+) False XLOC_025718
TCONS_00050583 mRNA downstream 84967 50155257 ~ 50172891 (+) False XLOC_025718
TCONS_00050584 mRNA downstream 85019 50155309 ~ 50166603 (+) False XLOC_025718
TCONS_00050585 mRNA downstream 102162 50172452 ~ 50266089 (+) False XLOC_025718
TCONS_00050573 other upstream 937133 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 2609007 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050528 other upstream 4434424 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050515 other upstream 5181457 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050507 other upstream 6352695 43716827 ~ 43716915 (+) True XLOC_025656
TCONS_00050613 other downstream 2549768 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050620 other downstream 2758622 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050635 other downstream 3997233 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050662 other downstream 5228753 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 5413223 55483513 ~ 55483647 (+) True XLOC_025789

Expression Profile

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