RNA id: XM_036957449.1


Basic Information

Item Value
RNA id XM_036957449.1
length 3723
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110500131
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 25988102 ~ 26012328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGCGTGATAACCTACCCCTGGTTTTCGGGAATTTTCCTACCCAATTATAAACTGATCGACGGGGTATGTTCCTACAAACACTGGTAGTAAATAGGACGAGCCTGAGTGGGGGGAGTTCAGGATCTGAAAAGACTCTGAAAAGATTTTTTGGGATATTCAACCATAGATGCACAACGATTGATTCCGCATTGCGGAAATCCATTCCAGCATACCTGTGTTTTGCACACCTGTAATACCACTTCACTCCACCGGGGGGCATCATTGAATTCTTCATTAATTAATCCGATTTATAGTAAAGGGGCGTTACCTTGATTTCTGCGGTGGTGCTGCTTTTGGTAAAATAGAGGTGCATTTATTCTGATCATTGGTGCCTCCACAAGGCTACTTCGACACAGTTATTACAAAACTCTGAAGCAGCAAGATGGACATTAGCTTCAAATGAACCGCAACACCAAAGCAGTTCTGTTTTGTAGTTTGACTTTTAAAGGCACCAACTTGTCAGAGAATCAATCTTCTCCTTTGAAAATACACCAGAGACTTCAAAAGGAGgGTGACGGACAGCTCTTATCAGTACCAGAGGAGCGAGGCGTCAAGGGCGGAACTGCCGCTGTGAGCCAAAGagccctactctcctctctctccctctctctctccctccctcgccaaCCCATCTCTCATCAGGAGGAAAAGGCCAGTCAGTGTGAGGGGGACTGTGTCACAGAGGGGGCTGACATCCACACAAAGACCCCTCTCCCCAAGAGAAGGGCTAACTGAAGCACAACTCTTCACTGTGAGGATCGCTGTTTCCGTGACGAGGGAGGTTCTCTGAAGGTTTTCTGGAGGTTGTGTGACCATTGAGTTGAGGTTTTTGTCTGGAGGTCAGCGAGTGAGTGGTACCTGCAGCCATGTCTCCGTTCCTGCGTATCGGCTTCTCCAGCTTCGAGATGGACCCAGGTCTGGCCTACCATGAAGAGATGATCAACCCGTATTGTGCTGTCTACATGAAGGAGGCTATAGACACAGAGAAGGGCCAGGTGTACAAGCAGAAGAAGCCCACCATGTACCCCCCCTGGAGCAGCACGTTTGACGCCCATGTCCACCGGGGGCGTGTCATGCACGTGGTGGTGAAGGATAAAGCCGAGCTAAAGTCTGAAGCCATCGTGCAGCTGGACACCCTGGCCTCACGCTGCAAAAAGGAGAACGGCAAGCTGGAGATCTGGgTGGAGCTGAAGCCACAGGGTCGTCTACTCATGGAGGCCAGATACTACTTGGAGAAGAGTGACGCCACAGGTTCAGGTGAGGGAGATGgatttggagagagagacagggatccAGGAGTCTTTGCCCTCCACGCACGACGCGGAGCCATCAAACAGGCCAAGATCCATGAGGTCAAATGTCACGAGTTCAGCGCCACTTTCTTCCCCCAGCCCACCTTCTGCTCCGTCTGTAAAGAGTTTGTCTGGGGTCTGAATAAGCAGGGTTATCAGTGTCGACAGTGCAACGCAGCCATCCACAAGAAATGCATTGACAAAATCATCGCCAAGTGCACTGGGTCGGCCATCAACAGCAAAGAGACCATGATCCACAAGGAGCGCTTTAAGATCGACATGCCCCACAGGTTTAAGGTGTACAACTACAAGAGCCCCACGTTCTGTGAACACTGTGGCACGCTGCTGTGGGGGCTGGCCAAGCAGGGACTCAAGtgtgaggAGTGCGGTATGAACGTTCATCACAAGTGCCAGAAAAAGGTGGCCAACCTGTGTGGAGTCAACCAGAAACTGATGGCTGAAGCCCTGGCCACGATCGAGACTAAACAGCAGGCCAGGGGCTCCAGAGAGAGTGAGATCTATAGTCGAGGCGGGCCGGGGGGTGTGGGCCAGGCAGGGGTGGTGCGGGAACCTTCAGGTTTAGTAGCAGGTCTCCCCCCGACCGCAGCCACCGCTGGGCGAAAAGagCAGCAGGGGATATCGTGGGACACCCCAGCGGAAGGGGACATGCCTGCCCCTGTGATGGAGGAGCCTGAGACGCTGTACGCCGTCCCCAGAAAAGAACACCTTCACAAGTTCACCCTGGACAACTTCATCCTACACAAGATGCTTGGCAAAGGCAGCTTCGGCAAGGTGTTCTTGGCCGAGCTGAAGAGCACCAGAGAGTTCTTTGCGGTGAAGGCTCTGAAGAAGGACGTGGTTCTGCTGGATGATGATGTGGAGTGTACCATGGTGGAGAGGAGAGTCCTCTCCCTGGCCTGGGAACATCCCTTCCTCACACACCTCCACTGCACCTTCCAGaccacggagaACCTGTTCTTTGTGATGGAGTATCTGAACGGAGGTGACCTCATGTTCCACATCCAGAACTGTCACAAGTTTGACGTGCAGAGATCTACGTTCTATGCTGCTGAGATTATCTGTGGGCTCCAGTTCCTCCACTCCAAAGGCATTGTCTATAGGGATCTGAAGCTGGACAACGTGTTGCTAGACTCTGAAGGCCATATAAAGATAGCAGACTTTGGGATGTGTAAGGAGAACATGGAGGGAGAAACGCGGACCTGCACCTTCTGTGGAACACCAGATTACATCGCCCCAGAGATTCTGCTGGGGCAGAAGTACGGCAGCTCAGTGGACTGGTGGTCGTTCGGGGTCTTGCTGTACGAGATGCTGATTGGACAGTCTCCATTCCATGGTCGCGATGAGGAGGAACTGTTCCAGTCCATCAGGACAGATGACCCCTGTTACCCCCAATGGCTGGCCAAGGACGCACGAGACATCCTCATCAAGCTGTTTGTGAGGGAGCCGGAGAGGAGGCTGGGTGTGAAGGGGAACATCCGTCAACACTCCTTCTTCAAAGACACAGACTGGAGCGCTCTGGAGAAACGAGAGGTGGCGCCGCCCTTCAGGCCATCTGTGAAATCCCCCAGTGACGTCAGTAACTTTGACAAGGAGTTTATCAATGAGAAACCCATGTTGTCGTGTGCAGATCGTACCCTCATGAACAGTGTGGACCAAACCATGTTTAGCAACTTCTCCTTCGTCAACCCAGCTGTGGGCCACATCAAAGGCCCCTGACCTGTGATAACCTTACAACAACCTACCAGAAACATATTCACAATCCATCAACAACCCACTGTACCAGCAACATATTCACAACCCATCTATTACCTTCGGACAACCCATTCACAACGCATCAATTACTCATTACGACAACACATCGCGGACAGGAGTCAAGGACACTTACCTAACAGATCAATAACATATCCACAACCAGTCAATAACACCTCAGCTCTTTTATACAGCCACGGtgtacagcagtggaggctgctgaggggaggacggctcataataatggccagaacagagcaaatggaatggtatcaaacacatggaaaccatgtgtttgatgtatttgataccattccactgattccactccagtcattaccacgagcccatcctccccaattaaggtgccaccaacctcctgtggtgtacaGACTACTTTAGGAGTCACTACCCGATTGCCCAGATTGTGTGGAATACTGAGAATGTTGTATTGTACTCATAACCTGTTATTCAATAGTGTCTGTTTTATCCCTGCACATAAGTGTCTGTTCAATCTACTTTAACCATTTACTGAGACATTTTCTATTTAATTCtgagtgtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1971745 lncRNA upstream 12438 25974562 ~ 25975664 (+) True G1721050
TU1971691 lncRNA upstream 103295 25876916 ~ 25884807 (+) True G1721010
TU1971698 lncRNA upstream 120058 25866596 ~ 25868044 (+) True G1721011
TU1971707 lncRNA upstream 128674 25859228 ~ 25859428 (+) True G1721016
TU1971685 lncRNA upstream 139639 25848133 ~ 25848463 (+) True G1721005
TU1971783 lncRNA downstream 29580 26041908 ~ 26043103 (+) True G1721087
TU1971766 lncRNA downstream 51514 26063842 ~ 26095905 (+) False il15ra
TU1971764 lncRNA downstream 76304 26088632 ~ 26088939 (+) True il15ra
TU1971824 lncRNA downstream 93613 26105941 ~ 26106170 (+) True G1721125
TU1971825 lncRNA downstream 94451 26106779 ~ 26107037 (+) True G1721126
XM_021577308.2 mRNA upstream 10823 25931590 ~ 25977279 (+) False sfmbt2
XM_021577309.2 mRNA upstream 10823 25931590 ~ 25977279 (+) False sfmbt2
XM_021577311.2 mRNA upstream 10823 25931590 ~ 25977279 (+) False sfmbt2
XM_021577312.2 mRNA upstream 10823 25931590 ~ 25977279 (+) True sfmbt2
XM_036957445.1 mRNA upstream 80616 25891873 ~ 25907486 (+) False LOC110500124
XM_021577320.2 mRNA downstream 51488 26063816 ~ 26089873 (+) False il15ra
XM_021577319.2 mRNA downstream 51489 26063817 ~ 26089873 (+) False il15ra
NM_001129987.1 mRNA downstream 51509 26063837 ~ 26121228 (+) False il15ra
XM_036957452.1 mRNA downstream 125763 26138091 ~ 26145938 (+) False cdc123
XM_021577324.2 mRNA downstream 125763 26138091 ~ 26147264 (+) True cdc123
TU1971515 other upstream 351513 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 375834 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 1670564 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 1693305 24277831 ~ 24294797 (+) True adm2a
TU1969708 other upstream 1851779 24135764 ~ 24136323 (+) True G1719268
TU1971779 other downstream 25974 26038302 ~ 26041843 (+) True G1721084
TU1971907 other downstream 317446 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 809319 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 2310192 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 2329173 28341501 ~ 28343734 (+) False LOC110500183

Expression Profile