RNA id: XM_021577319.2


Basic Information

Item Value
RNA id XM_021577319.2
length 3135
RNA type mRNA
GC content 0.39
exon number 8
gene id il15ra
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26063816 ~ 26121228 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGAATGAAAGTGAAAGTGCCAAAGTGGGAGCTACACATGTAATGTGGATGAAAGGTTTGCGGCGTTAACACAGACCATATCAAACGTTCGGAGTGGCATATTATTTTCCTGTGACTTAGTTCATCATCAAAGAGACTTGAAAGTGAGTCCTTTATTTAAACATTGGAATAGCAGGCTCCAGGGTCATGCGGCTGCGTCTCCTTTCCCTCCTTCTTATCGTCAAAGTGTGTCGACTCAATACTGTCAGTCCAGACGTGTGCCCACCCCTGTCTCATTGGAAGCTCACCAAGCCTTTGAACACGAGGGAAATTTATCAAGAAAACGAATCTCTGCGCTACCAGTGTGTGGATGGCTATGTGAGGAAGGCGGGAACCTCCAATCTCATCAAGTGCAAACGGATTGGTCAGGTTCTTCAGTGGACACTCCCAACACTGATATGCATACCTGACCCATCCATTCCAACTACGATAGAACCTTCAACAACCCACAAGACAACTCAATTTCCTACAACGCACCTCTCAGTGCCCACAGAGAGAGTTAGCCCAAGACCAACCACTCTCAGTTCACTTTTATCTCAAACACTGCATTCTGTCACAGAGACCCAAGAGGTCATTACTACGGTTACAGTGACAACCACCATCATCAGTGACATCACATCAGTGCCAGTGAATAAGTCCAGTGCGGTGACCTCTGTCTCCACGAAGACTGTTTCTCCATCAGAGAGTTACTGTGTCcccaacagagccccaacctccaGTGACTATCCAGTTGGCGatGGAAGCACTGGGAAGAGTTCTGCTACAGCCATATATGCAGGTGTAGGTGGGGTGGTAGTAACCATCTTGCTGGTTGCAGCGTTTGGAGTACTAATGTTTTGGAGAAGGAAACGGATGCAGCGGCTTGATCTGTCGCCAACACCAGACGAAATTATGCAAATGAATGTTGTGACATGAGCCACACTCCTTAGTGCCCTGGCGGACAACCAGCAGCCACTTAGAAAAGACAAAGGTACATCAGTCTGATGGTGGGGGAACAATGACCTTGGATTGGACAAGAACTGGACCAAAAATTACAGTGGCTTGGACCTGAGTGTCCTCGCGTGGAAAATTAAAATAACAAAAGCACCACCCAAATGTATTAATTTAAGACATATTGATTTatttaattgattaattaatatCCTTAAACTGGCAAAGATTCTAACTAATCACAACAGCCCAAAATCCATGGGATTACTTTCTCACTGAATTCACAAAAGGTATGTGATAAACATGCAACTTTGGAGAACAGTGAAAGTTaggcccgactaaccggtgcctgtatatagccttgctactgtatatagcctcgctactgtatatagcctcgctactgttattattcactgtatttttactgttgttttttatttccttacttactcccagttagatagcaaatgttcctttttttcaaaaatattatttttgtaggcgaaatagctccgtttgttcttcacgtttggctgagaaatcgcccgtaaattgcagtcacgaaaactgcATTTTTCAAATTACCTCCAtaagacagaaacatggcaaacgttgtttataatcaatcctcaaggtgtttttaaaatATCTATTAGacaatatatccatcgggacaattcgtttttcagtaggaccgattggagtaatggctacctctgtattttacgcgagaatctctctggcagcatcaggtgaccacttgcgcaatgtagccgcttacgggtattcttcaacataaatgcgtaaaactacgtcacaatgctgtagacaccttcaggaatacggagaaagagtaatctggttgatagcccattcactgatcaatagggactcattggaacgcagcgctttcaaaacatggggcacttccagattggatttttctcaggctttcgcctgcaacattagttctgttatactcacagacaatatttttacagttttggaaacgttagagtgttttctatcctaagctgtcaattatatgcatattctagcatcttgtcctgacaaaaaaTAAATACCCCGGCAAAGCACAGTAGAAAAAATGGTCACCAAAGATCCAACTGATTTGGAGTCCTatagaaaattatgaaacactgGTAAAACTAAAGCTAGAAAAGCCTCCTATATGGATAGTcttacaaaaaataaaaacaaaaatccaCAGCAGTTCTGAAAATACACAAATTACCTTTGAAATAATCTGGCTTTAGACCCAACCATTCTACCACCTACAGCATTATTGAAATTTACTAATGATTTATATTCTAAATCTGACCAAGGCCAACTAACTGGTGCCATCATTGATTTAATTGGGAATTCTATTTTACTAGCGAAACGTTAACATTGGTTTCACTAACAGATCACTAAACTGGTTTCATGCATATTTTAGCATTAGAAAACAATGTGTTTTCATAGACGGACACAAATCACAACTTCTTGGACTCAGTAGAGGAGTACATCAATCTCTATAGTCATAAATGAATTGCCTCTAATTTGTCAGGATACACAAGATCACTTATACGCTGATGATGCAGTGCAGTATACATCCACTTCAAATAATTTACAGATACAAGCAACTCCAAAGTCCTATAtcatactgtgttattgacttgtttattgtttactccatgtgtaattctgtgttgttgtctgttcaccctgctatgctttatcttcgccaggtcgcagttgtaaatgagaacttgttctcaactagcctacctagttaaataaagttgaaatgaaataaaaaatgctGTTTGGTATGACACCGAATGAACTCCATAGCTGGAAATTTCAAAATTCATTGAAGTGATGGAACAATGCTTGAAAGTGTTGTTTGTTTGAAATATCTGGGTTTGAGGATAGATTCTAAATGATCTTTTGGAAAGCATATTGATTATATTAGAAAACAATtgactacagtgcattcggaaagtattcagaccccttcattttttccacattttgttatagccttattctaaaattgtttaaaATAATTGTTTTCCCTTATCAAAtgaggcaaaaacaggtttttagacatttttgcaaatgtattaccaataaagaactgaaatatcacatttacatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1971783 lncRNA upstream 20714 26041908 ~ 26043103 (+) True G1721087
TU1971745 lncRNA upstream 88153 25974562 ~ 25975664 (+) True G1721050
TU1971691 lncRNA upstream 179010 25876916 ~ 25884807 (+) True G1721010
TU1971698 lncRNA upstream 195773 25866596 ~ 25868044 (+) True G1721011
TU1971707 lncRNA upstream 204389 25859228 ~ 25859428 (+) True G1721016
TU1971824 lncRNA downstream 16068 26105941 ~ 26106170 (+) True G1721125
TU1971825 lncRNA downstream 16906 26106779 ~ 26107037 (+) True G1721126
TU1971827 lncRNA downstream 17986 26107859 ~ 26126990 (+) True G1721128
TU1971831 lncRNA downstream 40906 26130779 ~ 26132124 (+) True G1721131
TU1971898 lncRNA downstream 158343 26248216 ~ 26248462 (+) True G1721188
XM_036957449.1 mRNA upstream 51489 25988102 ~ 26012328 (+) False LOC110500131
XM_036957450.1 mRNA upstream 51489 25988102 ~ 26012328 (+) True LOC110500131
XM_021577309.2 mRNA upstream 86538 25931590 ~ 25977279 (+) False sfmbt2
XM_036957452.1 mRNA downstream 48218 26138091 ~ 26145938 (+) False cdc123
XM_021577324.2 mRNA downstream 48218 26138091 ~ 26147264 (+) True cdc123
XM_036957453.1 mRNA downstream 58882 26148755 ~ 26217898 (+) False camk1da
XM_036957455.1 mRNA downstream 72235 26162108 ~ 26217898 (+) False camk1da
XM_036957454.1 mRNA downstream 91836 26181709 ~ 26217898 (+) True camk1da
TU1971779 other upstream 21974 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 427228 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 451549 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 1746279 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 1769020 24277831 ~ 24294797 (+) True adm2a
TU1971907 other downstream 239901 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 731774 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 2232647 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 2251628 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 2251628 28341501 ~ 28342796 (+) False LOC110500183

Expression Profile