RNA id: XM_021577324.2


Basic Information

Item Value
RNA id XM_021577324.2
length 1944
RNA type mRNA
GC content 0.45
exon number 13
gene id cdc123
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26138091 ~ 26147264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTTCTTATGGGAACTATATGTGGCTGGACTCACTTCCGGTAAATCATTTGCAGTATGAAGAAGGAGCAAGTTGTAAATTGTCAGTTTTCGGTCTGGTATCCGATATTTAAGAAGCATACTATCAAAAGTTTGATTCTCCCACTGCCTCAGAATGTAATAGATTATTTGCTGGACGATGGAACTCTAGTAGTTTCTGGAGGGGACAACAACAATCAGCAAAACCAGACCAACAACAGTGACTCAGAGGAGGAAGACGTTCAGTGGTCAGATGATGAGACAACCACCACTGTAACAGCTCCAGAGTTCCCAGAATTCAACTCTAAAGTGCTGGAGGCCATCAACACCCTAGGTGGGTGTGTCTTTCCCAAACTGAACTGGAGTGCACCGCGGGATGCTAACTGGATTGCTCTGAACAGCTCCCTGCAGTGTCAGAGTCTGAGCGATATCTTCCTGCTCTTCAAGAGCTCTGACTTCATCACCCATGACCTCACACAGCCATTCCTTCACAGCAGTGACGAGGATTCTCCGAATCCAGCCATAAACTATGAGCTGGTCCTGAGGAAGTGGAGTGAGCTGCTACCTGGTGGGGAGTTCAGGTGTTTCATCAAAGAGAACAAGCTGATTGgTATCTCCCAGAGAGACTATACCCAGTACTACCACCACATCTCTAAGCAGGAAGCCCAGATCTGCCACTCCATCCAGGAGTTCTTCAGCCAACACGTCCAGTATCAGTTCCTAGATGAGGACTTTGTGTTGGATGTCTACAGAGATAGCTGGGGGAAGGTGTGGCTGATCGATCTCAACCCCTTTGGTGAGGTAACCGATTCACTGCTGTTCACGTGGGAGGAGCTTACCTCTGGGAACAGCCTGTCAGCCAATCAAGAGGAGGGTGACACAGCCCAGCAGGAAGGCCCTGTGTTCCGCTACACCACCAGTGATGTGACGGTGCAGCCCAGTCCCTGTCTGAGCTACCGGATCCCTAGGGACTTTGTGGACCTCTCCACCGGCGAGGACGCATACAAGCTCATCGACTTCCTCAAACTGAAGAAACGCCAGCAAGAGGACtctgaggaagaggtggaggaagaggtacGACAGTGACAGCCCCTGAGGAGCAGCGTCTCTGTACGGTGACTGTTCCCTCGGACTGTTAGCCTAGCATAACAGTAACCCTAAAACTGTTAGGTTAGCGGTTAGCACAGAGACTACTAGACGCATGGAGGTTTATCCTTACTAGCTCTTAAATCTTCTGATGGAATCCATACACTTTTGGTCATCACCTTAGACCTATCCAGAATgctgcagatagaaatgtattgaatAGAACAAACACAACAAACCATAATAAGGAGAAAAGTATACCTGCAACACTGTAAAAGTCACATTAAATCTCATGGTTGTGTGTATTTAAGAGGAGTTCAAAGCAGTGCTCCTGTTGTATTGGCCTGGTGTGTCTACTGTAAATATAAATACTGTAACTTGACGTTGTGTAAAGGTAAGGGGGAGTCTGTTACAGGAGTCTGTGTATAGGAATAAAGAATGCTCAACTTTTATAATACAGCGCTGGGGAAGAGGCGTCTCTTAGTTTGTGTGTATAGCAGGTACATCATGGGATTGCAATTTCTGAGGGAGATAACCAAAGGGTCAGAGTTCTTTTACTTAATCCACTGGACTTTCTCTCTTCACACACACCaaatacacatttttccatgtgCTTTCTGATGGTTTCGTTAAACATCTGTATGTAATAGCAATACAATGGTTTACTCAAGAATTCTCTGTGCAACTCTTTCAAACATTCCAGTTCCTTACTCACTCTTTCTGGTCATTATAGTTCTGTCTGTTAGTGTATAATTACTTTTGTTTCTCATCATTGGTTTATTTTCTATGTGCTGGCAAAGAAAGGTGTTCTGATTGGGTAATAAATTGCTGGTGTGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1971831 lncRNA upstream 5967 26130779 ~ 26132124 (+) True G1721131
TU1971827 lncRNA upstream 11101 26107859 ~ 26126990 (+) True G1721128
TU1971825 lncRNA upstream 31054 26106779 ~ 26107037 (+) True G1721126
TU1971824 lncRNA upstream 31921 26105941 ~ 26106170 (+) True G1721125
TU1971764 lncRNA upstream 49152 26088632 ~ 26088939 (+) True il15ra
TU1971898 lncRNA downstream 100952 26248216 ~ 26248462 (+) True G1721188
TU1971899 lncRNA downstream 101240 26248504 ~ 26249045 (+) True G1721189
TU1971901 lncRNA downstream 103923 26251187 ~ 26251509 (+) True G1721191
TU1971902 lncRNA downstream 106810 26254074 ~ 26254706 (+) True G1721192
TU1971903 lncRNA downstream 108404 26255668 ~ 26256496 (+) True G1721193
NM_001129987.1 mRNA upstream 16863 26063837 ~ 26121228 (+) False il15ra
XM_021577320.2 mRNA upstream 48218 26063816 ~ 26089873 (+) False il15ra
XM_021577319.2 mRNA upstream 48218 26063817 ~ 26089873 (+) False il15ra
XM_036957449.1 mRNA upstream 125763 25988102 ~ 26012328 (+) False LOC110500131
XM_036957453.1 mRNA downstream 1491 26148755 ~ 26217898 (+) False camk1da
XM_036957455.1 mRNA downstream 14844 26162108 ~ 26217898 (+) False camk1da
XM_036957454.1 mRNA downstream 34445 26181709 ~ 26217898 (+) True camk1da
XM_036957461.1 mRNA downstream 81712 26228976 ~ 26237213 (+) False LOC110500144
XM_036957466.1 mRNA downstream 81712 26228976 ~ 26237213 (+) False LOC110500144
TU1971779 other upstream 96248 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 501502 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 525823 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 1820553 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 1843294 24277831 ~ 24294797 (+) True adm2a
TU1971907 other downstream 182510 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 674383 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 2175256 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 2194237 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 2194237 28341501 ~ 28342796 (+) False LOC110500183

Expression Profile