RNA id: XM_036957460.1


Basic Information

Item Value
RNA id XM_036957460.1
length 2827
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110500144
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26228976 ~ 26237213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACACTCCGTCACAGACCTGTGGAGGTTTATTAAATGACATTAAAAGTGGCCAGCACACTCAGGCAGGCTGCTGAGCTTCCTACCACGTGACAGCTGCTGATAAGATTATTCAATAACGGATATTGTCCAGTGTACATGAGTCATTGTGTGCAATAGTATTCCTTCACACCTCTGACAAGGCATGCTGTTGTTTTGATGCATACAGATCTAGAGGATATATAACATCTGATTGTCCTTGCACGGGGCTTCGCTAGAATCAGAATCCCTATTCTCATTCTAGTGTATTCCATGGTCTGAGAATGTATTGTCCACTTGCATGTCTCCACACCTCCTCACCTTGCTGTAGAGTGATGGCGTCCAGCTCCCCCATGGTGAACGGGGACGTCTCCCGGGGTCCGAGCTCCCACCCCGGCCACAGCCCCACCACAGGCACCCTGGAGGAAACGCTGCAGCAGATGAACCGCCTCATCCAGGAGAACCGAGACCTGAAGGAGGCGCTGAAGCAAACCAACGTGTCGATGAAGGAGCGCTTCGAGGGTCTGTCTGTGTGgagggagaagcagagggaggagaaggagttCCTGGAGGGGAGACTGGATGAGGCGCGCAGCCGTATGGAGGCACTCTCCTCACACAACCAGGAGCTCAGCATGaaggtggaggagctggagggaggaggagaggggaagggacagGCCgagacagccaatcagaattcagaaCTGGAGGCGCTGCGTGCCCAACTGGTGCGTCTGCAGGCTGAGAAGAATGACCTGGTGGCCATGAACTCTGAACTCCAGCTCAAgacaggtcaggggtcagaggatGACTCCTTCATAGAGATCAGGTTTGCTaaagaGGATACTGGAAAGGAGCTGTATCATAATGAAAGGGACCCCAGGTATGACATGAGTGTATCCAGGCAGGAGTCTGAGGAGCTGACTGTCAGCCAGCTGCTCCAGTCCCTGAGGAAGGAGACCCAGAGGGTGGAGAGGCTACAAGTCGAGCTCCAGGCTACCAGATCCAGAATCACAGAGCTGGAGGAGAAAGAAACTAACACGGAGAGCTCCACACAGACCTCACTACTGCCAGAGGTGGTTTCCCCAGCACTAGCCAACACAGCATGTGGTACTGAGCCAGAACCAGCGGAGGCACCCCAACAGAACTCTGGGAAGGAGAAGGCTGTGTCAGAGGTGGAGAATCTGAAGGCTCAGATGATGACCCTGTTTAATGAGCTACAGCAGGCTCAGAGCAAACTGGGCGAGGCAGAGGGCATGAAGAAGAACCTGCAGGACAgATGTAGGGATGTGGAACAGGAGGTGGTGACTCTGACAGCCCAGCTGGTAGAGAAgcaggaggtacagagtgagaATGACAGACTGAAGCTGCAGGTGGACAGCATGAAGGCCCAGAGCCAGCTAGAGCAGAGGAaggctggagaggagagGACTAACCTGACCCAGCTGAAGGATGCTTACACCAAGCTATTCGAGGACTACAACGAGTTGAAGCAAGAGAGCAAGAACCAAGAGCCACTGGTCACTAAGGAGGTGGGAGACCTGCAGACCAGACTGGACGCAGCAGAGAAGGCCCTGGCTGCTAAGCAACAGCAGATAGATGTCATGAAGCAGGAGATGTATCAGAAGGAGAAGGAGCTGGAAACAATCTCTGTGTTTCAGGCTCAGGCGGAGGTGTACTCATCTGACTTTTACGCGGAGCGAGCAGCTCGGGAGAAGATTCACGAGGAGAAAGAACGTCTGTCTGCTCAGCTGGACTTTGTCAAGAAACAGAACACTCAGCTACAGGATGAGATGGACTCACTGGGCAGGCAATCTCTGAGCGATATGCAGAGAAGACACATGCCACGTGGAGGCAATCCACATGGAGGTGCTGCTCCACACAACATGGAAGGAGCCAGAGGTGGTGATGCCAGGGACTGGCAGCAGCAGGGCAATATACCGGAGCACGTCTGCCCCAAGTGTAACGAGATCCTACCAGACCTGGATAGCCTGCAGATTCACATCATGGACTGCATCATCTGAAACTTCATCATAGTCATCAGCAACAACAAAGACAACTGCCGCAGACGCACCATAATCAGATTCTTCCTCTTCATCATCTGATTTATGGCAGAGTAAAATGCCGCCTTTATGCTCTACAAAGTGTGTTTATTTTGCAGTTCAGGGCTATGTTGCGCTGGTCTGTTTTAGAACATGTAATGtaacatgtaatataatataaaatgTGTTCTTACAGTGCACAACTACACACACTTTTGTTTTGTTAGAGGGGTGAAATGTATTGCGTTGATTATGCTATTAGGTGGTAAATGGAGAACTGGAATTTGTATTTTAATTTTGGTAACATTGTTTTCTTATTGACAGCTGTCTGCCACATAGTTTCTTGCTAAAGCGTTagtttttaattatttgttttattaAATGCTTATTACGGATTTTCGGGTGGTTCAATTTAATTAAGCAGTAATTCTGTTTCGATGAAGGTTATGAATAGATTACAATTACAGCATAGACATTTCGTTTTGAataattcaaaaatattttgctTCAACGGAGGGAAGGATGCCTAAGACACTTTaatgtttttttgtaaatgtatattgcACATACATTTTATCCATCATCGTCATGGTTTGTACATTTATAATTAAACCTATTTACAGCTTATGTAGCCTGCAGGAAGAATGACTATGCAAGGGAGTGTGTACCGTGTTAGCTAACTTCTCTATCCAGATGTATTCACAAATCCTGTGATTCTGTAAAATAATTATGAAAATATGTAATAAAGGTGTTATTGGTACAGTA

Function

GO: NA

KEGG:

id description
K19946 OPTN, FIP2; optineurin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1971831 lncRNA upstream 98140 26130779 ~ 26132124 (+) True G1721131
TU1971827 lncRNA upstream 103274 26107859 ~ 26126990 (+) True G1721128
TU1971825 lncRNA upstream 123227 26106779 ~ 26107037 (+) True G1721126
TU1971824 lncRNA upstream 124094 26105941 ~ 26106170 (+) True G1721125
TU1971764 lncRNA upstream 141325 26088632 ~ 26088939 (+) True il15ra
TU1971898 lncRNA downstream 11003 26248216 ~ 26248462 (+) True G1721188
TU1971899 lncRNA downstream 11291 26248504 ~ 26249045 (+) True G1721189
TU1971901 lncRNA downstream 13974 26251187 ~ 26251509 (+) True G1721191
TU1971902 lncRNA downstream 16861 26254074 ~ 26254706 (+) True G1721192
TU1971903 lncRNA downstream 18455 26255668 ~ 26256496 (+) True G1721193
XM_036957453.1 mRNA upstream 12366 26148755 ~ 26217898 (+) False camk1da
XM_036957455.1 mRNA upstream 12366 26162108 ~ 26217898 (+) False camk1da
XM_036957454.1 mRNA upstream 12366 26181709 ~ 26217898 (+) True camk1da
XM_021577324.2 mRNA upstream 83000 26138091 ~ 26147264 (+) True cdc123
XM_036957452.1 mRNA upstream 84326 26138091 ~ 26145938 (+) False cdc123
XM_036957456.1 mRNA downstream 796 26238009 ~ 26247743 (+) False mcm10
XM_036957457.1 mRNA downstream 808 26238021 ~ 26247743 (+) False mcm10
XM_036957458.1 mRNA downstream 1001 26238214 ~ 26247743 (+) False mcm10
XM_036957459.1 mRNA downstream 1078 26238291 ~ 26247743 (+) True mcm10
XM_021577334.2 mRNA downstream 28929 26266142 ~ 26301475 (+) False LOC110500147
TU1971779 other upstream 188421 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 593675 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 617996 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 1912726 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 1935467 24277831 ~ 24294797 (+) True adm2a
TU1971907 other downstream 92561 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 584434 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 2085307 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 2104288 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 2104288 28341501 ~ 28342796 (+) False LOC110500183

Expression Profile