RNA id: XM_036957468.1


Basic Information

Item Value
RNA id XM_036957468.1
length 3169
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC110500147
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26266142 ~ 26301475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagagtgggaggaggaggagtggatgcTGACAAAGCCCCCCCGTTTATCTATCATCTGATGCCATGTGTCTTCGGGACAAGTCCAGCCAACCCTGAGGAGTGTGTGATGGAGAAGATGAAGAGGTTTAAGCGGCGCCTGTCCCTGACGCTGCGCTCCAGCCACACCATAGACGAGTCTCTGTCTGAACTGGCCGAGCAGATGACCATCGAGGACGGCGGCAACAAGGACAATGAGCCAATCGTGCGTAATGGGCGACCGCCCTCCTCCCACAGTATGCACTCGTTCCTGCACCAGTACACCGGCTCCTTCAAGAAGCCCCCCCTCCGCAGGCCACACAGTGTCATCGGAGGAAGCCTGGGTTCGTTCATGACCTTCCCCAGCAATGGCAGCCGCCTTGACATCGTCCATGAGAACCTGAAGATGGGCTCAGACGGGGAGAGTGACCAGGCGTCTGGGACGTCGTCCGACGAGGTGCAGTCGCCCACCGGGGTGTGTCTGAGGAACAGGGTGCAACGACGCATCTCCATGGAGgacctGAACAAGCGTCTGTCTCTGCCTGCTGACATCCGTATCCCTGACGGTTACCTGGAGAAGCTGCAGCTGAGCAGCCCTACCTTCGACCAGCCCCTCAGCCGACTCTCACGCAGGGCCTCCctgtCGGAGATTGGTTTTGGGAAGCTGGAGACCTACATCAAACTGGACAAACTGGGAGAGGGGACCTATGCTACAGTATTTAAGGGGCGCAGTAAGCTGACTGACAACCTGGTGGCGCTAAAGGAGATCAGGCTGGAGCACGAAGAGGGAGCACCCTGCACCGCCATCAGAGAAGTGTCGTTACTGAAGGACCTGAAACATGCCAACATCGTGACCTTACATGACATCGTCCACACAGACAAGAGCCTGACGCTGGTCTTCGAGTACCTGGATAAAGACTTGAAGCAGTACATGGATGACTGTGGGAACATCATGAGTATGCACAACGTCAAGATCTTCTTGTTCCAGATTTTGCGGGGGTTGGCTTACTGCCACAAGCGGAAGGTTCTCCACAGAGACCTAAAGCCCCAGAACCTGCTCATCAACGAGAGAGGGGAACTCAAACTGGCTGACTTTGGTCTGGCGCGGGCTAAGTCTGTCCCCACTAAGACGTACTCCAACGAGGTGGTGACTCTGTGGTACCGGCCTCCTGACGTCCTGCTAGGCTCCTCTGAGTACTCCACACAGATTGACATGTGGGGTGTGGGGTGTATATTTTATGAGATGGCTGCAGGTCGGCCCCTGTTTCCTGGCTCCACCGTAGAGGACGAGCTCCACCTCATATTCAGACTGCTGGgcaCGCCATCAGAGGACAGCTGGCCAGGGATCTCTGGCGTCGACGAGTTCAAATCCTACAACTTCCCCAAATACAAACCTCAGCCCTTCATCAACCATGCACCCAGGTTGGACACAGAAGGCATTGAACTGGTGTTATCGTTTCTGAAAtacGAGTCCAAGAGGAGGATCTCAGCAGATGAAGCTATGAAGCAGGCCTACTTCAAGAGCCTAGGGGCACGGGTCCACACACTGCATGAGAgTGTATCAATATTCACTCTGAAGGATATCCAACTGCAGAGAGACCCTGGCTATCGGAACTCCTCAAACCTAGAGTCAGGCAACAGCAAGAACAGAAGACAGAGCATGCTCTTCTAGACTTTCTGCTCCTGGGTGGAGCTCTTTCCTGTTGCTATAGTAACGGACTCTCGCTTGAGATGAGACTGAATGGGACAgagccccctcctccctctcgcatgagcccctcacccctcacccccccAATAGAGCGAGTGAGTCTGGAGTTGattggggagggagagatgatcTACGTTTATTTATTTGAAGATAtggaaaggggggtgggggggtatattttgctgctatactactactgtctgtatttAACACGCAGTTTGTGTATATGATGATGTGAACTCCGACACCATGCACAACCGACCAGTCGCTAAGGTTACTATTGTTATTGTAAATGATGAATTATGGTTATGATTCCACTGATGATCTCGATGTTGTTTATCATAGCTGTTACCTTTGCTGTTTTGCATGTCGTTGTGTTCAGAGACTGAATGCCTTTTTAGCATTTTTTTCCTCAAGTACTTTCTCAAGCTTCCTCTGATGGTGGTGTTTGACTGAAATGAGACCAGACCGGTCCAAactgggagagagggactggactgGGAGTGTCTGGTCCTCAACTGGAAATCTTTCCTCTGAACCGAAGCAATTCCCagcctccctctcattctccttgACCTAGAACATTCCAGAACATTTCAGGGGCCAGACGGGGCTTTAGGAAGGGGTTGAGGTGGGGCCCAGTCATTGGGAGAGCACAACAACCCTCAGAGCCAACGAATGGGACCACAGCAGAAGGTAGAGTTTGACTCCCCAGGACATTTCCGGTCTCCCTCTCCGGTTGTCATGGCAACAGGGAAGCAATGATTagggaggagagaaacacagGAGCGCCGTGACCTCCCACAGGAACTCATCagtccccctccttctcccctagATGGTCTTGACCCCAGTTCTTGTATGCAAGATCTTCATTTTCTCTTGCCTTTTGAAGGTCTACAATACTGGTTGTTTTTGTGCATCAATAACCTGTAAGCAGtttctagttttttttttaatggctcTCTACTCTGTAGCTGGCCATGGGAGTGGGGTTGTACCATGATGACTGGTGTTTAAAATGGCTGACTTGATTTGACAGTATTAAGAgatttttgttttctatgtttgaCCTCTCCTTGTGAATACAGTGTCAGTGTGGCATGTCAAGGGGCAGAAGCTCCGCCTCTCAAAGGAGAAAACATTTTGTTTCATAGTCTACATTGgacctcgagtttcttttttcaGCGTTTGTACACATTTCAAATAGACTTAACAAGCCGCGGTGTGTGTCTTCAGCCGACAGTGATGTATATTAATATTGTAATACTGTACTTTTTCAAGTTTAAAACTGATCTGAGCTTACCTGagggtgtgtgtgcgcgccagACATATGGAGCTCCTGCTGTGGTGTAAACTCAACCTCTCTGGAACACTGACAGTTGTCCTGTAATTATTTATTTCTCATAACcatcacagtaaaatgagtctgTTTGATAAGTA

Function

GO: NA

KEGG:

id description
K15595 CDK17, PCTK2; cyclin-dependent kinase 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1971918 lncRNA upstream 4166 26265610 ~ 26265857 (+) True G1721207
TU1971916 lncRNA upstream 5754 26263972 ~ 26264269 (+) True G1721205
TU1971915 lncRNA upstream 6352 26263324 ~ 26263671 (+) True G1721204
TU1971914 lncRNA upstream 6988 26262676 ~ 26263035 (+) True G1721203
TU1971912 lncRNA upstream 8664 26261131 ~ 26261359 (+) True G1721201
TU1971959 lncRNA downstream 70357 26371832 ~ 26379091 (+) True G1721246
TU1972023 lncRNA downstream 150965 26452440 ~ 26453819 (+) True G1721294
TU1972012 lncRNA downstream 197315 26498790 ~ 26514372 (+) False G1721289
TU1972016 lncRNA downstream 204558 26506033 ~ 26514372 (+) True G1721289
TU1972072 lncRNA downstream 230477 26531952 ~ 26532250 (+) True G1721338
XM_036957456.1 mRNA upstream 22280 26238009 ~ 26247743 (+) False mcm10
XM_036957457.1 mRNA upstream 22280 26238021 ~ 26247743 (+) False mcm10
XM_036957458.1 mRNA upstream 22280 26238214 ~ 26247743 (+) False mcm10
XM_036957459.1 mRNA upstream 22280 26238291 ~ 26247743 (+) True mcm10
XM_036957460.1 mRNA upstream 32810 26230264 ~ 26237213 (+) True LOC110500144
XM_021577337.2 mRNA downstream 15059 26316534 ~ 26324591 (+) False LOC110500149
XM_036957472.1 mRNA downstream 15059 26316534 ~ 26324591 (+) False LOC110500149
XM_021577338.2 mRNA downstream 15060 26316535 ~ 26324591 (+) True LOC110500149
XM_036957474.1 mRNA downstream 23269 26324744 ~ 26333964 (+) False cep83
XM_036957476.1 mRNA downstream 23289 26324764 ~ 26333964 (+) False cep83
TU1971779 other upstream 228180 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 633434 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 657755 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 1952485 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 1975226 24277831 ~ 24294797 (+) True adm2a
TU1971907 other downstream 28299 26329774 ~ 26331093 (+) True cep83
TU1972909 other downstream 520172 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 2021045 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 2040026 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 2040026 28341501 ~ 28342796 (+) False LOC110500183

Expression Profile