RNA id: XM_036957476.1


Basic Information

Item Value
RNA id XM_036957476.1
length 2728
RNA type mRNA
GC content 0.54
exon number 16
gene id cep83
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26324744 ~ 26333964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAATCTGTAGTTCTCTGCAGGATAAGATAGCTCGTTTTGTCAAGGAGTCGAGTCGAGTTCGAGAGGCGAGATGGACCCCTCTGCCTTTGCTCAGTCCGGCCCCCTGCACCCAAGCCTGGACCCTGGGGGGATGGTGAAGCTGGGGGAGTCCGACATGGAGCTGCAGAAGATGCTGATCGATGAGCGGATGAGATGTGAGAACCACAAGACCAACTACCGGACTCTCAAGGCTGAACATACCAGGCTGCAGGATGAGTTTACCCGGGGGCAGGGAGAGCTGAAGCGTCTCCTCAGTGACAAGCAAACCGCCCAGGAGAAACTGCAGCTGCTGCTGGCTGAACTCCGCGGTGAGATGCTGGACAAGACCAGGGAGCTGGAGGAGCTACGACTACAGGTGCTGACCCCCCAGCGTTTGGAGCTGTTGAGGGCCCAGGTGCAGCAGGAGATGGAGGGGCCTGTCAGAGAGCGCTTCAACAAACTGGAGGAGGAGACTGAGAAGTACAGGTCTGAGTATAACAAGCTGCGGTACGACTACACCTTCCTGAAGTCTgagtttgaccaccagagagaggagagcgctCGCATACTGGAGGAGAAGAAGATCCGCTTTGatgctgaggtatCACGGctggaaagggacagagaggagctgaTTGGCCAGTATCAGGGCACAGACCCGTCTAGAGACGGTAAACGCGTTGAGTCTCTGCTGAGAGAGAAGGCCCAGCTCCACCTGCGTCTGAAGGGCCTGGAGGCTGAGGTGGCTGAGCTCCGGGCCCAGAGGGACAACTCTGGCCAGCAAGCCGAGAACGTGCAGCGCATCCAGGTCCGCCAGTTCGCAGAATCCCAGGCTGCAGCCAAGTCACTGGAGGCAGAGAGGCAGTCACTGCGCCTGCAGTTGGAGCGTCTGGGGAGCGAGTTGCAGCTGAGTCATGAACAGAACACCCAGCTGACCGGCAGACTACACAAGGCTGAGCGAGAGGTCAACACTCTCACCAGCCAGGTGGAGGGCATGAGGCACTCTCACAAGCTGGAGGTGGCCAATGTGAAGCTAGAGTGTGCCAGGTCTAGAGGGGAGgtggagcgggagagagacaCACTACAGGGCCAAATGGAAGGTATGCAGTCTGATGTGGAGGTGTTGAAGGGGACggtggagagacagaaggaggtgctggctgagagggagagggaactcGTCCGGAGGGTGCAGGCTGCTCGCGAGGAGGAGTTCCACAAAACAGCCATCGTCCACGAGGAGAAgttgGTGCTGGAGGATCGTCTGGCTGAGCTGGAGCAGCAGAGGGCGCTACAGGATGCCGCTGGCCACAcccagaaagaggagtgggaggatcGTCTCCGTGGCGCCCAGCTGGGGGAGGAGTCTGCCCGTAAGGAATTGCAGATCCTAAGGACTAAACTGCAGCAGCAGGGCTCTCAGCTGGAGGAACTGCAGACACAGAAGACAGATAATGCTGATCTGAGACGGCAGAACCAGGAGCTGGGGGTGCAGCTGGGTACGTTGTCCCACGCCGAGGCTGAGCTTCTGGAGACCAACCAGCGTCTGAGGGACACCCTGGAGAGGGCCCGGGAGGACTTGAGGAGCGCCCGCTCACAAGCTGAGAGGACCCAACACGAAGCCGAGAGATTGGTGGAGGAGCGTCGTGTGGAGTGGTTAGAGGAGAAACACAAACTACAGGAGAGGGATGCAGAGCTGCAGGAGAAGTACGGCCAGGCCAAGGAGAAACTTCAGAGGGCCGCGCTGGCACAGAAAAAGaggAAAAACATGACAGAGAACAAGGAGAAGAGATACCAGGACAGGATCCAACTACTGGAGGCTAAGATGGCAGAGCTGGAGCTCCAGACCAGCTCAGCCAAGAAGCGTCCTTCCTACACTGAAGAGCATGCCCTCCTTAACAGACGACTGAAGGAACTGCAGCGCCGACACAGCGAGTTCCGACGCCTCCTATTGGGCAACCAAGTGACCTCTGCCACAGGCCCTGCCCTCATGACCTCCACCACCGGCACAGGACTTGGCCCGGTCCTTGTACCCGAGTCTGAGGGGCCTAGTCTTCATgaggagCAGCACCAGAGAGAGTTATCACTGCTGCGTCAGAGGCTGGAGGAGTTAGCCTGTACGCAGCAGCAGCAGATGGAGGAACTGGGGCCTCCCATGGACAGGAACAGGGGCTCTGGCCTGCACGACTCTCTCCCTGAACTCTGAcctctctgacccccccccccccaccccccccagagAGTGAGCATGTAGGATTTATTACTCCCTAAAAGTGATGTTTGGTAATATTCTAATTTAATCAGTGACCTCTCCAATATTTTGTGAAAAACAGTTTGATTTTATTGGCACAAAAGATGTCAAATGAAAAGAGAACTACATGATTCAATGTTTACATTCCTTGTTGAATAACAGTACTCTAGTCCTTCCATGCCTATGTAAATAATGATTTCAATGGCCAACCAATGACTTCCTCAGTTTTAATTGACTGTTGTGAGATTTGTATCAAATGTTTACGCTAAGACCATCACTCTAAAACTTTAAAAGCATGATAGTCCCAAAGgcatttgtatttaaaaaaaataaggttGGTTTCATGGATATAAAGAGCTGTGACTTGCacaacatttataaaaacattttttgtaatgTTATTTCaagatgtatgtgtttttgtatttgcaattcatacaaataaatgtttatgCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1971918 lncRNA upstream 58907 26265610 ~ 26265857 (+) True G1721207
TU1971916 lncRNA upstream 60495 26263972 ~ 26264269 (+) True G1721205
TU1971915 lncRNA upstream 61093 26263324 ~ 26263671 (+) True G1721204
TU1971914 lncRNA upstream 61729 26262676 ~ 26263035 (+) True G1721203
TU1971912 lncRNA upstream 63405 26261131 ~ 26261359 (+) True G1721201
TU1971959 lncRNA downstream 37868 26371832 ~ 26379091 (+) True G1721246
TU1972023 lncRNA downstream 118476 26452440 ~ 26453819 (+) True G1721294
TU1972012 lncRNA downstream 164826 26498790 ~ 26514372 (+) False G1721289
TU1972016 lncRNA downstream 172069 26506033 ~ 26514372 (+) True G1721289
TU1972072 lncRNA downstream 197988 26531952 ~ 26532250 (+) True G1721338
XM_021577337.2 mRNA upstream 173 26316534 ~ 26324591 (+) False LOC110500149
XM_036957472.1 mRNA upstream 173 26316534 ~ 26324591 (+) False LOC110500149
XM_021577338.2 mRNA upstream 173 26316535 ~ 26324591 (+) True LOC110500149
XM_036957469.1 mRNA upstream 23289 26266142 ~ 26301475 (+) False LOC110500147
XM_021577346.2 mRNA downstream 94692 26428656 ~ 26439619 (+) False ncaph2
XM_021577347.2 mRNA downstream 94692 26428656 ~ 26439619 (+) True ncaph2
XM_036957484.1 mRNA downstream 115293 26449257 ~ 26511168 (+) False LOC110500156
XM_036957483.1 mRNA downstream 115423 26449387 ~ 26511168 (+) False LOC110500156
XR_005038561.1 mRNA downstream 115424 26449388 ~ 26510977 (+) False LOC110500156
TU1971779 other upstream 282921 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 688175 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 712496 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 2007226 24316638 ~ 24317538 (+) True LOC110500097
TU1969963 other upstream 2029967 24277831 ~ 24294797 (+) True adm2a
TU1972909 other downstream 487683 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 1988556 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 2007537 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 2007537 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 2007537 28341501 ~ 28342847 (+) False LOC110500183

Expression Profile