RNA id: XM_021577346.2


Basic Information

Item Value
RNA id XM_021577346.2
length 2639
RNA type mRNA
GC content 0.49
exon number 19
gene id ncaph2
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26428656 ~ 26439619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGAATAAGAACATCTCGCGCGAATATaacataaaataataaaatggtggACGCGCGGTTCTTTTGAAAGTGCTCCAAAGTTTATCATCACATATTAAATATTTGGCTCACCTTCGTATTTTGTGAATCAACGCCTACGGTGATTGGAAATCATTTGGGGAGCCATGGTCATGGACACAGTGGAGACTCGATTCGCCCATTTGTTGCAGCCTATCCGGGAGCTCACGAAAAACTGGGACATTGATGTGGCCTCGGAGTTGGCAGATTATCTAGAGGAGTTGGATGAGATGTGCATCTCGTTCGATGGGGGCAAAACCACTCTGAACTTTGCAGAGGCAGCGCTGCTCATCCAAGGCTCAGCCTGCATTTACAGCAAGAAGGTGGAGCATTTGTACAACCTGGTGTACCAAACTCTGGACTACATCAATGACAGAAACAAGAAGAAAGATAAACAAGCATTGACTTCTGGAGAGGATGGAACAGATGGGGCCTCATCCAACAATGCTAATGATGACGACAGGTTTGACTCCTTAGACCAGGATACAACAGATGTCTCCCTGCAGTCAGAGATGAAGAATGAGGCCAACACGAATGTGGACGTGGCCCCTCTTCCCCCCGAGTCTCTGATTCCTCCCGAGGCATTTGAGAAACAGAAGCTGCTTCTCGTCAGTCTGAAAGGAGAGGTGCTGGGCAGCTGTAAGGACTTTAAGATGAACACGTTCATTCCGGACTCCCTGGGTATCATCCGCCTCTTCCTGGCCTCCTCTCAGTCCCACTTCCTCAGGGATGCCCTGTCTGATGCACCCCTGGTCCCCGTCACCCTGTTCGGGCACCAAGATGACGCAGAGTTTGCAGCAGGGGATGTCGTGGCGGGCGTTACCGGGGACGATGGTGGTGATGCCGGTGCGGACAACTTTCTGCCCCTGGAGGACAACGAGATGGACCATGGACCTGAGGAACATATTGACAGACACCAGGCCCCCAGTGAAAGGAGGGTgttgagggagagggaaggagtccAGCAGCTCTCTGAGGAGGAGCAGAAGAaacagagggtggaggaggagagggctcaGATGGCAAACATGTGGAGATTACATGACCTTTATGATACAGTCGGCGAGGACAAGCCTCTGAAAACAGGAAAATGTTATAAGGTTCCTCCGGGTCTTGATGATTCTGGGAAGCGGAAAAGGAAAGGCCCCGCTGCGCTGCAAGACTTCTGGACCTGGTACACTGGCACCTATGACCCCCCTGAACCCAGGCTAAAGAATGGACCTACGTATACGGACTTGAACTACATCTATATGAGTAAAATGAAAGACAAGCTGAAGACCCGGAAAAGGATTCTTAGAAACACGggtgtgtttgtgtctgacgAGGAGCTGAAAAGGACGTACTTGCAGCTggacgagagggaggaggagttAGAGGGCCTCAGACACCACGACCCCCTAGGCCTGCACGATGACCTCTCTGACAACGAACATGACCCTTTGACTGATGAAGCCCCGGCTGACTTCCTGAATGGACAGGCTTTCATACCTGGGGCAGACATGGACGGGCTGAGTTACGAAGACCTGGTGAAGAAGAGTGTGGAGCAGTTCTTGGTGAACTCCCAGGGTTATGCCCAGGAGACAGCGCTGTCGAAAAGAGTGAAGGAATGGGAGGACAAAATACGACCGGAGCTCACCTATCAGGAGGAGCGTGCTACCTTTGACATCCATGACTATGGGGACAGGATCGTAGCCGCGTTGTGCAGTGTGGGCCAGAGGAGGACCTTCGCCTCTGTAGTCCACGGCATGGACAACTTCGAGGCCTGCAAGTACATGCTGGCTTCCCttcaactgGCCAACGATTACACAGTGGAGGTGGACAGGAGTGAGGGTCTCGAGGAAAGCATCGACACCATGGGACTCACTCTGCTCAGCAAACACCGGGCCAACCAACGATTCAAGAAAGCCCCCGCATCAACCTCCGACCCAAAAATCTCCTCAACCTGATCCAGTGGGTGTGTGAGCTCTTGCCTCCTACAGACTCAGTGGGGACTAGAGACCCATTACTCTGAAATGTGGTACACACTCCTGTGTGTGTGGCGCCACTTGTGCCTACCGGACCACTAGTACTAACCTGCTATATCAACAGGACCTGGCTGCACCCATTAACTCGCTCATGTACTTGCTCTTATTTAATTTCAATCTCCTCTCTATGGTTTTGATCTTTTGTGTCTGTGTATTCCTCTGGTTATGTCAGAGAAATAAGCTATTTTCCACcccttttttttcttccattcACCTGCATTTACACTATATTTACCAGATGTCACACTTGGggtatgttgtggtgtgttgacTGACACACATCTAAAAAAGATCACCCTTTTCACAATTTTTGGCTTTGTATCCATGACAATTGTATATGTAGCTTTTTATTTGCATGTTTGTCCAAGTAGTGTAGAACTTGTACATTTTCTATATAAAATGAGAGGACTTTTTAAGAAAAACTTGATCATTTTTCTACTTTCATTTTAAGAGAATAACCTAAATTGGGAAATTATGTTTCATTGGTTTGTaaggaaaaatgttttttactatggCCAAAAATGTGTATAAAATAAAACATGAGCATGTGGATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1971959 lncRNA upstream 49565 26371832 ~ 26379091 (+) True G1721246
TU1971918 lncRNA upstream 162799 26265610 ~ 26265857 (+) True G1721207
TU1971916 lncRNA upstream 164387 26263972 ~ 26264269 (+) True G1721205
TU1971915 lncRNA upstream 164985 26263324 ~ 26263671 (+) True G1721204
TU1971914 lncRNA upstream 165621 26262676 ~ 26263035 (+) True G1721203
TU1972023 lncRNA downstream 12821 26452440 ~ 26453819 (+) True G1721294
TU1972012 lncRNA downstream 59171 26498790 ~ 26514372 (+) False G1721289
TU1972016 lncRNA downstream 66414 26506033 ~ 26514372 (+) True G1721289
TU1972072 lncRNA downstream 92333 26531952 ~ 26532250 (+) True G1721338
TU1972084 lncRNA downstream 103800 26543419 ~ 26543829 (+) True G1721350
XM_036957474.1 mRNA upstream 94692 26324744 ~ 26333964 (+) False cep83
XM_036957476.1 mRNA upstream 94692 26324764 ~ 26333964 (+) False cep83
XM_036957477.1 mRNA upstream 94692 26325059 ~ 26333964 (+) False cep83
XM_036957473.1 mRNA upstream 94692 26325365 ~ 26333964 (+) False cep83
XM_021577337.2 mRNA upstream 104065 26316534 ~ 26324591 (+) False LOC110500149
XM_036957484.1 mRNA downstream 9638 26449257 ~ 26511168 (+) False LOC110500156
XM_036957483.1 mRNA downstream 9768 26449387 ~ 26511168 (+) False LOC110500156
XR_005038561.1 mRNA downstream 9769 26449388 ~ 26510977 (+) False LOC110500156
XM_036957486.1 mRNA downstream 9769 26449388 ~ 26511168 (+) False LOC110500156
XM_036957485.1 mRNA downstream 10054 26449673 ~ 26511168 (+) True LOC110500156
TU1971907 other upstream 97563 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 386813 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 792067 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 816388 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 2111118 24316638 ~ 24317538 (+) True LOC110500097
TU1972909 other downstream 382028 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 1882901 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 1901882 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 1901882 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 1901882 28341501 ~ 28342847 (+) False LOC110500183

Expression Profile