RNA id: XM_036957483.1


Basic Information

Item Value
RNA id XM_036957483.1
length 2180
RNA type mRNA
GC content 0.56
exon number 10
gene id LOC110500156
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26449257 ~ 26511168 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGGAAAGATATATGGGGAGGATAGAAGGAGACGGAATTAATCAGACAGCGGTATTTAGTATGAGAACCTTTACTAATGAGGCCTGCGTCTGCGTAGTTAACACAACGAGAAAAGAGaatcggagggagagagagagagtgtgtgtgtgtgtgtgtgagagaggggatggagggagggaggagtgaacGACAGACGGGAAATGAATCGCAAGCTGCAGGAGAATAGGTTGTCAGCATCCAGAGCTCCAAGGTCTGACTCTCATTAAAGCGTCTGTGCGTCTCGCTCACCTCCAGGATGGAGGGGCTGCTGCGGCTGAGTCTACCCGGAGCTTGAGGAGCCTTCCTGGGCTTCGTCTGCGTCatcttccccctgtctctctctgccctggtCCCCCGATACTCATCCATCACTCGACCTCTGCAGTGCAAGAGAGCATCTGGACCCACACGACACCTCCCCCTAATCCCCCACACTGAGTTGCCAGGGCAACCATGGACGGACTACGCCTGCCACCGGTCACCGAGGAGGTCATTGACCCTgcagatgacATATGTGACCTGAAGGTGGAAAGGCCTGGCATTGTGGACATGCTGACGGCCAAAGAGAGGGAGACCCTGGAGGAGAACgatgagaaggaggagaaagagaaggaggtggaggtggggaaCGGAGAGAAGGGCCAGCAGGAGGAccagggagaagagaaggaggtgaaagtggaggaggaggaggtggaaggagtAATGTTAGAGGAGGATGACTTGGAGGAGTTGAAGTCCCATGTGTTGCAGCTGGTGTTGGAGCTGGAGGAGGCCAGGGAGGTGTCTCAACAACATGAAGAGAGCTTCATGGAGATCCAGGGTCTGTTGGAAGATGAGCGTCTGGCTAGTGCTCACCAGGCAGAGAGCTTTAccagacagatccagagactgCAAGCTCAGCTGCGTTCAGTCCAGGAGGAGATGGACTctctggaggaggagaaggagagtgagcTGGGGGAGGTGCAGGAGGAGCTGAGGTCTGCCCAGGAGGAGGTGCTGGTTCTGCAGCAGGCGGGGGAGGAGGCAGCAGCGGAGAGGGAGAACGACATCGCCTCCCTGCAGGAGGAGCTGTGTCGTTTGAGGGCCGAGCTGCAGCGTCTCCGCACCACGGCCCAAGAGTACGAGTTGGAGATCACCACCCTGCGGGCTGAAATCAGTATGAAGAgcatgaggagggagggagagactgacggtgagGTAAGCCAGTTGACGGCGGAGTGTCATGCGATTTCAGACGAGTGTCAGACCCTGAAGGACGAAAACAAACAGCTGAGCCACAAACTGCAGCAGCTACAGCAGCAGCGAGCCGGCTCCAATGATGTCTATCTGGCCTTGAGAGGGGAGGGGGACGAAGACCAGAAGGATGAGGGTGTTGGGCAGGATGAGGAATCAGTGAAAGCTGGAGGCTACATGACCCTGTCCCAGACCCAGGGTGGGCAGACCCAGGGTGGGCAGACCCAGACTGGTCAAGGTGGGCACTTGGTGGATGCCTCCATCCAGAAGAATATCTCGTTTGATGGCAAGCCCATCACCAATTGGAACGGGGGACCCTCTGAAGTCTTCTCCCTACGAGACCAGCTCAAACTGACTGAGGAGAGGTCCTCGCAAGTACAGAGACAAtgtGAAGGGTTGAAGGGGGAGCTTGCGGAACTTCAGGGGCTGTTTGACTGCAGCCAGAAGGAGAGGGCGGAGCTGGAGCAGGAACTGCATCACTGCAGGGTGGAGCTAGAGAGGCTGGGCGGCAGGAAGTCACAGAACTGCACTCCTCCGTCTGAgccccctgttctctccatctccttcataGGAATGATTGTAATAATGGCCCTGATATggtgctggtgggaggagctggcATCCTAGAGGGGACCAGGAGAGCGAGGGAGGCTGGAACCTGGTGGCGGTGGTTGCCGTGGCAGCGCTTGTAGTCCTGATAGTCCCCAGCCTTTCCAGAGCGTTTACCTGAGGACTACACAGAACAGAAGTCACTGTACAGGAAATGACTGTGCTGGTTTCCCCTGGCAACATGGGCAATGCCATGCCCCTATCTCACGATGCCCTTGTCAAGTCTCCTCCTCGCTTCATCTTCCAAGGAGGACTGCATTGACAACTGACATTTTCACCAGGAAATACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1971959 lncRNA upstream 70296 26371832 ~ 26379091 (+) True G1721246
TU1971918 lncRNA upstream 183530 26265610 ~ 26265857 (+) True G1721207
TU1971916 lncRNA upstream 185118 26263972 ~ 26264269 (+) True G1721205
TU1971915 lncRNA upstream 185716 26263324 ~ 26263671 (+) True G1721204
TU1971914 lncRNA upstream 186352 26262676 ~ 26263035 (+) True G1721203
TU1972072 lncRNA downstream 20784 26531952 ~ 26532250 (+) True G1721338
TU1972084 lncRNA downstream 32251 26543419 ~ 26543829 (+) True G1721350
TU1972726 lncRNA downstream 184943 26696111 ~ 26749099 (+) True G1721900
TU1972832 lncRNA downstream 260458 26771626 ~ 26771944 (+) True G1722002
TU1972860 lncRNA downstream 275015 26786183 ~ 26786536 (+) True G1722030
XM_021577346.2 mRNA upstream 9768 26428656 ~ 26439619 (+) False ncaph2
XM_021577347.2 mRNA upstream 9768 26428656 ~ 26439619 (+) True ncaph2
XM_036957476.1 mRNA upstream 115423 26324764 ~ 26333964 (+) False cep83
XM_036957487.1 mRNA downstream 9243 26520411 ~ 26618210 (+) False LOC110500158
XM_036957488.1 mRNA downstream 9243 26520411 ~ 26618210 (+) False LOC110500158
XM_036957489.1 mRNA downstream 9243 26520411 ~ 26618210 (+) False LOC110500158
XM_036957494.1 mRNA downstream 9243 26520411 ~ 26618210 (+) False LOC110500158
XM_036957490.1 mRNA downstream 9244 26520412 ~ 26618210 (+) False LOC110500158
TU1971907 other upstream 118294 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 407544 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 812798 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 837119 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 2131849 24316638 ~ 24317538 (+) True LOC110500097
TU1972909 other downstream 310479 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 1811352 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 1830333 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 1830333 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 1830333 28341501 ~ 28342847 (+) False LOC110500183

Expression Profile