RNA id: XM_036957487.1


Basic Information

Item Value
RNA id XM_036957487.1
length 9909
RNA type mRNA
GC content 0.55
exon number 49
gene id LOC110500158
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26520411 ~ 26618210 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGGAGTCGAGGGGCCTGACGCGAGCTTCAGGGGTGCCGAGCTTTTTAAAAACCTGTCCTGCCTAGAGCTTCATTTAGCTACTCAAGTGTAACGGACATCACCAAGCAGGTTGCCGCCGCCGACTTCGTAGGGCTACTAGCGGTCCTGTCCACAGACAACGCCTTCATCTTTCTACAGTCTATTCTTCTTCCGTGCCAAGGTGTCTATTCGGATGCAGCAACCACTTTTTTCACAATTCTGATAAATTTAAAGCCAGGAGACCGTCCACATTGGAAACGATAAACGGATTATTTAATTAATCCCATTGACAGACTGCTTGGTTTGACAAACTCCACTCCCATCACAAGTACAAACGAAAATCTCGTTTACTTATTTTTCCTAGTTTTACAACTTTTTTCGCGGCCAATGCTTGGCACTGGCCCGCAATAaactgtttttttctttctttccacGCTCCCTTGCGTGCCGTAACGTTCACACACTGGCCCCACTGAATGTGGTATAAAAAGGGCACGGAAACCGACAACATGATGAGCAATAATACGTACTACGAGCAGCAGCAGCCGCCGCAGTACTACAAGAGTACGGACAACGGGGACGACGAGGAAGAGATGCCGGCTACGGAGAAGGACCTCGCTGAGGATGCGCCCTGGAAGAAAATACAACAGAACACCTTCACCAGGTGGTGCAACGAGCACCTCAAGTGCCTCAACAAGCGGATCAACGACCTACAGAAAGACCTGACCGACGGGCTCAAGCTCATCGGTCTTCTGGAGGTTTTGAGCCAGAAGAAAATGTACAGAAAGTACCACGCCAGACCTAACTTCAGACAAATGAAACTGGAAAATGTGTCCGTTGCGCTGGAATTCTTGGAGAGAGAACACATAAAGCTGGTATCGATAGACAGTAAGGCCATCGTGGATGGGAACCTGAAGCTTATCCTGGGTCTGATCTGGACTCTGATCCTGCACTACTCCATCTCAATGCCCATGTGGGAGGACGAGGACGATGAGGACGCCAAGAAGCTGACCCCCAAGCAAAGGCTGCTGGGATGGATCCAGAACAAGGTGCCCCAGCTGCCCATCAACAACTTTCACCGAGACTGGAGGGACGGCAAGGCCCTGGGAGCCCTGGTTGACAACTGTGCCCCAGGCCTGTGTCCTGACTGGGAGACGTGGGATCCTAGCCAGCCTGTGGAGAATGCCAGGGAGGCCATGCAGCAGGCTGACGACTGGCTCGGAGTGCCCCAGgTGATAGCCCCTGAGGAAATAGTGGATCCCAATGTGGACGAGCACTCGGTGATGACCTACCTGTCCCAGTTTCCCAAGTCCAAGCTGAAGCCTGGTGCCCCGCTGCGCTCCAAGACTCTGCACCCCAAGAAGGCCAAGGCCTATGgaccagGTATTGCGCCCAGAGGTAACATGGTGCTGAAGCCGGCTGAGTTCATCGTGGAGACAGTGGAGGCGGGGCTAGGGGAGGTGCTGGTCTATGTGGAGGACCCAGAGGGACACACAGAGGAGGCCAGAGTGATCCCCAACAATGACAAGAACAGGACGTACTCTGTCATCTACCTGCCCAAAGTGGAGGGCCTTCACAAGGTGAAGGTGCTTTTCGCTGGGCAGGACATAGACAGGAGTCCCTTCGTGGTGAGTGTGTCCAAAGCCATGGGAGACCCCAACAAGGTGCAGGCCAGAGGACCAGGACTGGAGCCTGTAGGCAACGTGGCTAACAAGCCTACCTACTTCGACATCTACAcagcagGTGCCGGTGCTGGAGACGTGGGTGTAATCATCGTGGACTCCCAGGGCAGAAGAGACACCGTGGAGATCATTCTGGAAAACAAGGGGGACAGTATTTTCCGTTGCACCTATTGCCCTATCCTGGAGGGGTCTCATGTTATCTATGTGACGTTTGCTGGGCAGCAGATACCCAGAAGCCCTTTCACCGTCCACATCTCAgaggCTCCACCGAGCTCCCTGCCCCCCGGCTCTCCGGTGCAGATAGTGCCCCAGTCCATACGCACCCCACCCACAGACAAGGCCAAGAGAGTGCCCCCCCCAACACCGCCCAAACCCAGGCGACCAACCAGCAACCCCAACGTGTGCCGGGCCTCAGGGAGAGGTCTCCAGCCTAAGGGGGTGAGGGTGAAAGAGGTGGCCGACTTCAAGGTCTACACCAAGGGTGCCGGCAGCGGAGAGCTCAAGGTCACCGTCAAGGGGCCAAAGGGACTAGAGGAGCCTGTGAAGGTGCGTGATGCGGGAGAAGGGGTGTATGAGTGTGACTACTACCCCATCATGACTGGCAAATATACCATCACCATCACCTGGGGCGGACAGACCATCCCACGCAGCCCGTTCGAGGTGGTGGTGAGTGAGGACGTGGGGCCCCAGAAGGTGAGGGCGTGGGGGCCGGGCCTGGAGACAGGCATGGTGGGGAAGTCAGCTGACTTTGTGGTGGAGGCCATCGGCACAGAGGTGGGAACTCTGGGTTTCTCCATCGAGGGCCCGTCGCAGGCTAAGATAGAGTGTGATGATAAGGGCGACGGGTCATGTGATGTACGTTACTGGCCCACGGAGCCTGGTGACTACGCTGTTCACGTCATCTGTGACGACGAGGACATCAAGGACAGCCCCTTTATGGCCCACATCCTCCTCACAGCCAATGACGTGTTCCCTGAGAAGGTGAAGAGCTATGGCCCAGGTCTGGAACCGATTGGCTGCATTGTCAACAAACCAGCAGAGTTCACCATTGATACAAGTAGAGCCGGCAGGGGCCAGCTGAAGATATACGCCCAGGATGCAGAGGGCTTCCCCATAGACATCCAGATCACAGAGAACGGAGACAGCACCTTCCTCTGTGTCTACATTCCCACCAAGCCCATCAAACACACCATCATTATCACCTGGGGAGAGGTCAACGTCCCCAACAGTCCCTTCAGGgtgaccATCGGAGAGGGCAGCCACCCAGATAATGTGAAGGTGTACGGTCCAGGTGTGGAGAAGTCAGGTCTGAAGGCCAACGAGCCCACCTACTTCACTGTGGACTGCAGCGAggcaggacaagGGGATGTCAGTATTGGCATCAAGTGTGCTCCCGGCGTGGTTGGTCCGGCAGAGGCTGACATCGACTTTGACATCATCAAGAACGACAACGACACGTTCACAGTGAAGTACATGCCCCCCGGCCCCGGACGCTACACCATCATGGTGCTGTTCGCTGACcacGAAATACCCATCAGCCCTTTCAGAATCAAGGTGGACCCCTCTCATGACGCTAACAAGGTGAGGGCGGAGGGACCCGGACTCAACAAGACAGGTGTGGAGGTAGGTAAGCCCACCCACTTCACCATCTACACCAAGGGAGCGGGCAAGGCCAAGCCTGAAGTGCACTTCACCGGAGCAGCCAAAGGGGACGCTGTCCGAGACTTTGAGATCATTGACAACCATGACTACTCCTACACCGTGCGCTACACTGCAGTGCAACAGagTAACATGTCTATCTCAATCTGCCACGGCGGTGACCCCATTCCCAAGAGCCCCTTCAACATCACTGTGGCGCCGCCCCTTGACCTCAACAAGGTCAAAGTTCAGGGGTTGAACAACAAGGTCGACGTTGGGAAGGATCAGGAGTTCACAGTGAGCACGCACGGCGTCGGTGGTCAGGGCAAGATGGATGTGAAGATCACCTCGCCCTCTCGTCGGCCAATCCCCTGCAAGCTGGAGTCTGACACGGCCAACGAAGTGCACACTGTGAAGTACATTCCCCCTGAGGAGGGCCCCTACAAAGTGGACATCAGCTATGATGGGAACCCTGTGCCTGGGAGCCCCTTCACTGTGGAGGGGGTGATGCCCCCTGACCCCTCAAAGGTGCGTGCCTATGGCCCAGGCCTCCAGGGGGGCATGGTGGGAAAGCCGGCCCCCTTCGCCATTGACACCAAGGGTGCGGGCACCGGCGGGCTGGGCCTGACCGTGGAGGGGCCATGCGAGGCCAAGATCGAGTGCCAGGACAACGGCGACGGGTCCTGCTCTGTCTCCTACCTGCCCACAGAGCCCGGCGAATACGCCATCAACATCCTGTTTGCCGAGCAGCACATCCCCGGCTCCCCCTTCAAGGCCATGGTACAGTCCGTGTTTGACCCCAGTAAGGTCACGGCCTGTGGGCCAGgcctggagagagggaaggtcaACGAGGCAGGGTCGTTTGTAGTGGACTGCGCCAAGGCTGGGGACGCCGAGCTGACCATTGAGATTATTTCCGATTCGGGGTCGAAGGCGGAGGTGCGTGTTCAGAACAACAGTGATGGGACCTATTCTATCACGTACATCCCACAGTTCCATGGCATGTATACTATCACCATTAAATATGGGGGCCACGCCGTGCCCAAGTTCCCCACCCGTGTGCAAGTGGACCCAGCCGTGGATACCAGCGGGGTGAAGGTGTACGGACCAGGAGTGGAACCCAGAGGGGTCCTGAGGGAGGTGACCACCCATTTCATCGTGGATGCCCGTGCCAAGAGCAAGACTGGGGGCAGCCATGTCAAGGCCCGCATCGTCAACCCTACAGGCGCCAACACAGACGCCTACATCACTGACAAGGGGGAAGGCACCTATAGAGTGGAATACACGGCCTATGAGGATGggatgCACCTGATTGAGGTGCTGTATGATGATGTGGCAGTGCCTAACAGTCCGTTCCGTGTCCCGGTAACGGAGGGTTGTGACCCCAGCCGCGTCAGAGCCTACGGTCCTGGTCTGGAGGAGGGCCTGGTCAACAAACCGAACCGCTTCACTGTGGAAACCAGgGGTGCTGGTACAGGGGGTCTGGGCCTGGCCATCGAGGGTCCATCAGAGGCTAAGATGTCTTGTAAGGACAATAAAGATGGCAGCTGCAGTGTGGAGTACATCCCCTTCACCCCGGGAGACTATGATGTCAACATTACCTTCGGAGGCTTGCCCATCCCAGggagtCCTTTCCGTGTGCCTGTGAGAGAGCTGGTGGACCCAAGTAAGGTGAGGTGTTCAGGCCCAGGGCTGGGTAGTGGAGTCAGAGCCCATGTTCTTCAGACCTTCACGGTGGACACCAGCAAGGCTGGCCTCGCCCCTCTGGGAGTGGTGCTGTACGGACCAACtgGAGTGGCTGAGCCAGTGAACATCACAGATAATGGAGACGGAACACACACAGCGACCTACACACCGGCCAAGGACGGCCCGTACACCGTGTGTGTGAAGTACGCTGACCAGGAGGTCCCTCGCAGtccgTATAAGATCAAGACATTGCCTGCCCATGATGCCAGTAAGGTGCGTGCCAGTGGGCCAGGTTTGAATGCCCAGGGTGTGCCTGCCAGCCTGCCCGTGGAGTTCACCATCGATGCCCGCGATGCTGGCGAAGGCCTGCTCACTGTGCAGATACTGGGTCCGGATCGGTCCAGGCGCGAGGCCTCAGTGTTTGTGGAGGACTGGGGCAGGAGGGTATGGGAGAAGCATATAGTCAAGGGGACCATACCCTTCAGTATTCTTAAGAAAGGCTCCGACCCAGAAGGCAAGCCGAAAAAGGCCAATATCCGTGACAACAGAGATGGGACGTACACAGTGTCCTATGTACCAGACATGACAGGGCGCTACACCATCACCATCAAGTATGGAGGAGACGAGATTCCCTACTCACCCTATCGTATCCATGCCCTGCCCATTGGAGACGCCAGCAAGTGTCTGGTCACAGTTTCCATTGGAGGACATGGATTGGGTTCAGGCCTCGGACCCACCATCCAGATCGGCGAGGAGACCGTCATCACCGTGGACGCAAAAGCTGCTGGGAAGGGAAAGGTGACCTGTAAGGTGTCGACGCCAGATGGGGCGGAGCTAGACGTGGACGTGGTGGAGAATTCCGATGGAACTTTTGACATCTACTACACGGCTCCGGAACCTGGGAAATACGTCATCACCATCCGCTTTGGAGGAGAACACATTCCAAACAGCCCCTTCCACGTGGTGGCCAGTGATACCGTCCCTATAATAGAGGAACCGTGTGACAAGCTCCAGTTACAACAGCCCTACCAGGCCTACCAGGGCTACCCCCCTCACTGGGCCACAGAAGAGCCCGTCACCCCCGGCGATATCATGGAGCCTATGCTCCGCCCCTTCAACCTGGTCATTCCGTTCACTGTTCAGAAGGGAGAGACCACAGgtgaGGTGCGAATGCCCTCAGGTAAGACAGCCCGTCCTAACATCACAGACAACAAGGATGGGACAGTAACAGTGAAGTACGCCCCTACAGAGAAAGGCCTGCATGAGATGGACATCAAATATGACGGAAACCACATCCCAGGAAGTCCCCTCCAGTTCTATGTAGATGCCATTAACAGTGGTCATGTGACAGCCTATGGTCCTGGTCTGAGCCACGGCATGGTCAACAAACCTGCCACCTTCACCATCGTCACGAAGGATGCAGGGGAAGGTGGTCTGTCCCTGGCGGTGGAGGGTCCCTCTAAGGCAGAGATCAACTGTAAGGATAATAAGGATGGAACCTGTACTGTGTCCTACCTTCCCACTGTACCAGGAGACTACAACATCATTGTCAAGTTTGACAACAAACACATCGCCGGCAGCCCCTACACTGCCAAGAtcacagGAGATGACACTATGAGGACATCCCAGCTCAACGTCGGCACGGCAACAGACGTGTCATTGAAGATCTCAGAGACAGACCTGAGCAGCCTGACAGCGAGCATCAGAGCACCGTCGGGCAACGAGGAACCCTGCCTCCTCAAGAGACTGCCCAATCGACACATCGGTATCTCATTCACTCCTAAGGAGGTAGGGGAGCATGTTGTGAGTGTGATGAAGAACGGGACGCACGTGACCAACAGCCCTTTCAAGATCATGGTGGGCCAGTCAGAGATCGGTGACGCCAGCAAGGTCAAAGTGTTTGGCCAGGGACTGGTGGAGGGACACATCTTTGAGGTGGCTGAGTTCATAGTTGACACCAGGAACGCAGGTTATGGTGGTCTGGGCCTGTCTATCGAGGGTCCCAGTAAGGTGGATATTAACTGTGAGGATGTGGAGGATGGTACCTGTAAGGTGACCTACTGTCCTACTGAACCAGGAAACTACATCATCAACATCAAGTTCGCCGAACAGCACGTCCCAGGAAGTCCTTTCACGGTGAAGGTGTGTGGTGAGGGCAGGGTGAAGGAGAGCATCACTAGGAAGAGACATGCTCCATCCATTGCTACTGTGGGCAGCACCTGTGACCTCAACCTCAAAATACCAGGTAATTGGTTCCAGATGGTGTCGGCCCAGGAGCGGCATACGCGCACGTTCACGCGCAGCAgtcacacgtacacacgcacggaGCGCACAGAGATTAGTAAGACACAGGCGGGGGAAACCAAGCGGGAGGTGCGCGTGGAGGAGAGTACCCAGGTCGGGGGAGACCCCTTCAGGGACGTGTTTGGAGAGTTCCTGGGTAGTCAGAGTCTCACAGGCTTCAGTGGGATACCAGCCACCTCCAGACAGCCtcaagagggtgtgtgtgtgacacaagaGGGTGACCAGGGGACCCAGGAGATGACGGCCCAGGTGACCAGTCCGGGGGGAAAGACGGAGGACGCAGAGATCATCGACGGCGAGGACAGCACCTACAGCGTCCGCTTCATCCCCCAGGAGATGGGGCCCCACACGGTCAACGTCAAGTACAGGGGCCAGCATGTCCCCGGGAGCCCCTTCCAGTTCACCGTGGGGcccctgggagagggaggggcaCACAAGGTCCGGGCTGGGGGCACGGGGCTGGATAGAGGAGTTGCAGGAGTGGCAGcTGAGTTTAGTATCTGGACCAGAGAGGCTGGTGCAGGAGGTCTGTCCATCGCTGTAGAGGGGCCCAGTAAGGCAGAGATCAGCTTTGAAGACAGGAAGGATGGATCCTGCGGAGTGGCCTATGTGGTGCAGGAACCAGgtgACTATGAGGTGTCCATTAAGTTTAATGATGAGCACATCCCAGACAGTCCCTTCATGGTCCCCATCGCCACTCTGTCTGATAACTCACGCCGCCTTACAGTCACCAGCCTACAGGAGATGGGGTTGAAGGTGGGCCAGGAGGCGTCGTTCGCGGTGCAGTTGAACGGGGCGAGGGGGTTGATAGATGCTAAGGTTCACACCCCGTCCGGAGCTGTAGAGGAGTGTTATGTTACTGAGCTGGACAGCGACCAGCACGCCATCCGGTTTATCCCGAGGGAGAACGGAGTCCACTCCATCGAAGTGCGTTTCAACGGGAGCCACATTCCCGGTAGTCCCTTCAAGATCCGTGTGGGAGAGATCGGACAGGTCGGAGACCCGGGAATGGTGTCTGCCTTCGGACCTGGACTGGAAGGAGGAACCACAGGCGTGGCGTCAGATTTTGTAGTGAACACATGTAATGCGGGGTCGGgtgctctgtcagtgaccatcgatGGGCCGTCCAAGGTCAAGATGGACTGTCAGGATTGTCCCGAGGGTTACAAGGTCACCTACACACCCATGGCCCCCGGCAGCTATCTCATCACCATCAAATACGGAGGACCATCCCACATCGTAGGCAGCCCCTTCAAGGCTAAAGTCACAGgtgctCGTCTCTCTGGTGGTCACAGTCTACATGAAACCTCGTCCGTTCTTGTGGAGACAGTAACCAAGACGTCGTCGTCTTCGTCGTCGATGGACGTGGCCTATGGCCCTAAGTTCTCTTCGGATGCCAGTAAGGTGGTCTCCCGGGGCGCCGGCCTATCAAAGGCCTTTGTAGGACAGAAGAACACCTTCACAGTAGATTGCAGCAAAGCAGGAACTAACATGTTGATGGTGGGGGTACACGGCCCAAAGACCCCGTGTGAAGAGGTCTACGTTAAACATCTGGGCAACAGGATGTACAACGTCACCTACACCGTCAAAGAACAGGGCAACTACATCCTCATCGTCAAATGGGGGGATGAAAATGTCCCCGGCAGCCCCTTCCATGTCACCGTCCCCTAAAATGGACTCATCCATCCCATCCCTGCTGTATCCCAGAATGGACTAGTCCAACACCCCCACAGACACACTAAAGATACAAAAACTTTTTCCGTCTGTCCAGGGGGGAATTAATTTACCCATCATGCATTGTGGCAAATTACTCTGATAACTTATCCTGGTGACATCACAAAGATCTGCGGTGCCAATCCTACTATGTATGCGCCACCCCTATTTTCTACGCACCACCCACCAACCAGGCATCCTGTTGCTGTTTACTTTCAATGAGAGAGAATGTACAAAGAGAAGTCAAAAGTAAAATCATGTTTTCTGTCTGTATCGGCCTATGTTAGTATTTTCAGAGCACAAACACAGTATGCAGTCACCAACATGTGCTTTATAGTTAGTCCTCCAAAGGTATCCCCCACTGCCTGTACTGGCCTGGCCAAAATGGCTGCCTTTACATGAGGGAAGATGGCTGTGATGTCACTGTCtgggtcacagacagacagagaggagttatttacctttatttattcaGTCCTTTTATTTTCTTTGACAGAAAATGGTCTTATATTGTTTCAAAGGAGAAGGTTTCAGTCGATGTTAGAAACTATTCTCCCTCATACCGGGCCTTCCTGTGTCATTTCGGGTGTAACCATGGACACAGAGATGTGGTTGGCCAAGGATTTTGTACCCAGGAAGAGAGCACGGCATAGCAATCGGTTTATCGTGTGAATGTTTAATTAAGAAGTCCACAGAGAGATGCTACAGTGGAACAGTATCATTGAGTGACATTTTATAGTGATTTTATATGTATGAAAATGAACAGAAAAAACTCTTAATTGTTTGATATACTAACCTTCTGTTTGGTACGGATGTGCAGCCATAATAAAACGTTTAACTGCTAACTTACCACTGAAAACCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1972012 lncRNA upstream 6039 26498790 ~ 26514372 (+) False G1721289
TU1972016 lncRNA upstream 6039 26506033 ~ 26514372 (+) True G1721289
TU1972023 lncRNA upstream 66592 26452440 ~ 26453819 (+) True G1721294
TU1971959 lncRNA upstream 141320 26371832 ~ 26379091 (+) True G1721246
TU1971918 lncRNA upstream 254554 26265610 ~ 26265857 (+) True G1721207
TU1972726 lncRNA downstream 77901 26696111 ~ 26749099 (+) True G1721900
TU1972832 lncRNA downstream 153416 26771626 ~ 26771944 (+) True G1722002
TU1972860 lncRNA downstream 167973 26786183 ~ 26786536 (+) True G1722030
TU1972890 lncRNA downstream 190215 26808425 ~ 26808683 (+) True G1722060
TU1972906 lncRNA downstream 200599 26818809 ~ 26819040 (+) True G1722076
XM_036957484.1 mRNA upstream 9243 26449257 ~ 26511168 (+) False LOC110500156
XM_036957483.1 mRNA upstream 9243 26449387 ~ 26511168 (+) False LOC110500156
XM_036957486.1 mRNA upstream 9243 26449388 ~ 26511168 (+) False LOC110500156
XM_036957485.1 mRNA upstream 9243 26449673 ~ 26511168 (+) True LOC110500156
XR_005038561.1 mRNA upstream 9434 26449388 ~ 26510977 (+) False LOC110500156
XM_021577352.2 mRNA downstream 244086 26862296 ~ 27012894 (+) False kcnd2
XM_036957498.1 mRNA downstream 244086 26862296 ~ 27012894 (+) False kcnd2
XM_021577354.2 mRNA downstream 429753 27047963 ~ 27060560 (+) True LOC110500161
XM_036957503.1 mRNA downstream 448728 27066938 ~ 27150379 (+) True cped1
XM_036957506.1 mRNA downstream 534391 27152601 ~ 27161037 (+) True LOC110500163
TU1971907 other upstream 189318 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 478568 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 883822 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 908143 25611816 ~ 25612268 (+) True G1720836
TU1969980 other upstream 2202873 24316638 ~ 24317538 (+) True LOC110500097
TU1972909 other downstream 203437 26821647 ~ 26821935 (+) True G1722079
TU1974515 other downstream 1704310 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 1723291 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 1723291 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 1723291 28341501 ~ 28342847 (+) False LOC110500183