RNA id: XM_036957506.1


Basic Information

Item Value
RNA id XM_036957506.1
length 2779
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110500163
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27152601 ~ 27161037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTTTTCGCGTCCGTCCAATTATCTCGTAGGACATGCGCGTCTGCTTAATATGAATCCACGGGTGCGCCAATCCGAGCCTAGGAGCGCGCCGCTGAGAGACTCTGTGTGGGTTCTCCCAGTCCAGGATAAAACAGTTTGTCTGTGTTTTGGGGAACACCGTCGGGAACTTATCACCCATCCAACTGTAGGCTACTACTAGCCACTGAGACACGTGATTTGAATCACCATTCCTCCcgcgtcctctctccctccccgcgGATGTTTTTTTACTGAATTGCTCGAGATAACCACGGATTGAGGATTAGTTCTGTTAGGGTCTTATGTTGTGGGGCTAGCATGAGACAGAGCCCAGCACCGATCCAGCGCTCCATGGACATACCCTTCCCCAGTGCCCGGGAGGCAAGTCGGCTTCTGTAAATGAGGTGGCCATGGAGAGAAGAAGCGGCTGCGGAGTACATCAGATCTGCTTTCTGTTTCTCTTACTGTTTTCACTGTATCCTGTCTGCTGTCGAGCCAGTTGGATGTGGTTGGGAATAACCTCCGTGGGAGTACCAGAGAAGCTGGGCTGCGCCAATCTCCCGCTGACGCACAAGCAGAAGGACCTGTGCAAGAGAAAGCCCCATCTCCTGTCAAGCATCAAGGCCGGCGCGCGCATCGCCATCGCGGAGTGCCAGACGCAGTTCGAGCACGAGCGGTGGAACTGTTCTACCACCAAAGAGCTCTCTGTGTTCGGCTACGAGCTAACCAGTGGGACCAAGGAGACTGCGTTTATCCACGCGGTGATGGCGGCGGGGCTGGTCCAGGCAGTGACGCGCTCCTGCAGTGCGGGCAACATGACGGAATGTGGCTGTGACACCAGCCTGCAGGGCACAGGATCGCCCAGCGAAGGGTGGCACTGGGGCGGCTGCTCAGACCATATCCAGTACGGTACATGGTTCAGCAGGAAGTTCATAGATAATGCAGTGAAGAATATGTCCTCAGCCAGGGGAGGGGAGGCACTGCTCACCATGAACCAGCACAACAGTGAAGCTGGGAGACAGGCCGTCGCCAAGACGATGGCCACCGACTGCCGTTGCCACGGCGTGTCGGGCTCGTGCGCCGTGAAGACGTGCTGGCGTACCATGGCGTCGTTCGAGCGCGTGGGCAACTTCCTGAAGGAGCGTTACGAGGGAAGCGTGCAGGTGCTGGACCGCTCCAAGAGGAaggtgaggaggaaggagaaggaccAGCGCCGCATGCCCATCGGGAAGGAAGAACTTATCTTCCTCAACAAGTCTCCTAACTACTGTCTGGAGGACCGGCGCTGGGGCGTGGCGGGCACTAGAGGGCGCCGGTGTAACCGCACTTCGGCCGGCCCCGACGGGTGTAACCTGCTCTGCTGCGGTCGAGGGTATAATACACACGTGGTTCGCCACGTAGAGAGGTGCGAGTGTAAGTTTGTGTGGTGTTGCTATGTGAGGTGTCAGAAGTGTGAGAGCATGAATGACATGCACACCTGTAaatagggagagggaggcaggcgatggcacacacacacacatacacaccgtcCCCAATGAGAGACTAAAAGACTTCCCCATCATTCCTCTCTCCCATGGACAAGAGGGGCGCAGCATCAACAACCCTCCATCTCAACCCTCAGGAAGACAGTATTTATACACCACACCAGCAGAGGTAGACAAAGACAGTGGAAAATCGTTGACTTTTGAATGGCCTATCAGGGCTCAGCCTTGTAGGAGGCTATCCAATGGGACAGGAGTTCCACAGTGTTTCAGAGGTTTGAGGATCCACACACTCTGACAACCAAACATGGACATCTTCGCAATTTACTCGGATGAGTCGAAATGAGCCCCGAAACTCAGACTCCATGATAAAAACAAACTGAACTTTGATGAAAGTTAAAACCTCACTCTTCAAGTCTTCAAATGGACTCAGTGAATGGTGTGTATAAGAGGAGCAACAAAGGGACCAAAAAGTGCTTGTAGGGGGACCCTGTCCTGCAGGGCGCGCAACAGCTTTAAAGGACTGTAGAGTAGATGCAGTCAACAGTGTCAGTACATTTCCAGATCAGAACGAAGTCTCATATAGACAACAGAAGGCTAGAGCCATAGACAGTACAGGGATTGGGCAACCGTCAGAGGTTGCCATCTTTTGTGTCATTTCTATGGCTCTCTTCCAGGCTAGGGAGCAAGAACAGACCCGGCTTCCACCCATGGATGGCTCTATGGTGATCGATGGTGGATAGATTAGGCTTATTCTCGTTGGAAAGCTTGCCGTATCAATGCATAGAAAGAAGTCTTGAAATAATCATTCCAAATTTGTATTGAATTTTTGTAATAAACTTTAAAGTAATGACTTCAAAAAGATATGGTACCGTGAcatttaaaaaacttttttttttaaaatatattttggaaagATTTCTTAAcctaaaatgtttgttttgtacTATTCAGATTGCAAATTCAGGGCAGAGTGAAGCTACAGGTGCTTTAATTGAGAATATGTCAAAATGACGTAGTATTTTTGTAAATTGTTTACATTTTGTAAATATTAAATTATGCTGTATCACACGACGAGAGTGTCCTTAAGATTCAAGCCCATCCAATGCTCTTAGACATACAGCATGTGTTTGTCAAACTGTACCATTTAATGTGTTGCTTTTCTGTTTGTCATCATTGTATTAAGGTCTTTTGTTATCCTTTTGCTGTCCGATCCACTTTTTCTCtttcctgtgtttgtgtttggagcCGAAACCAGCTATAAATGAAGGAATG

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K01558 WNT16; wingless-type MMTV integration site family, member 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1972970 lncRNA upstream 289635 26862530 ~ 26862966 (+) True kcnd2
TU1972926 lncRNA upstream 308530 26831939 ~ 26844071 (+) False G1722095
TU1972927 lncRNA upstream 311217 26831939 ~ 26841384 (+) True G1722095
TU1972907 lncRNA upstream 333002 26819365 ~ 26819599 (+) True G1722077
TU1972906 lncRNA upstream 333561 26818809 ~ 26819040 (+) True G1722076
TU1973148 lncRNA downstream 72094 27233131 ~ 27233392 (+) True G1722308
TU1973153 lncRNA downstream 77447 27238484 ~ 27239624 (+) True G1722313
TU1973164 lncRNA downstream 90117 27251154 ~ 27252736 (+) True G1722323
TU1973175 lncRNA downstream 105545 27266582 ~ 27267891 (+) True G1722328
TU1973193 lncRNA downstream 131300 27292337 ~ 27292931 (+) True G1722346
XM_036957503.1 mRNA upstream 2222 27066938 ~ 27150379 (+) True cped1
XM_021577354.2 mRNA upstream 92041 27047963 ~ 27060560 (+) True LOC110500161
XM_021577352.2 mRNA upstream 139707 26862296 ~ 27012894 (+) False kcnd2
XM_036957498.1 mRNA upstream 139707 26862296 ~ 27012894 (+) False kcnd2
XM_036957496.1 mRNA upstream 534391 26520412 ~ 26618210 (+) False LOC110500158
XM_036957507.1 mRNA downstream 9666 27170703 ~ 27210849 (+) False stab2
XM_036957508.1 mRNA downstream 9666 27170703 ~ 27210849 (+) True stab2
XM_021577361.2 mRNA downstream 148162 27309199 ~ 27311609 (+) True LOC110500167
XM_036957529.1 mRNA downstream 495339 27656376 ~ 27685960 (+) True LOC110500177
XM_021577383.2 mRNA downstream 729428 27890465 ~ 27902897 (+) True LOC110500180
TU1972909 other upstream 330666 26821647 ~ 26821935 (+) True G1722079
TU1971907 other upstream 821508 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 1110758 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 1516012 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 1540333 25611816 ~ 25612268 (+) True G1720836
TU1974515 other downstream 1161483 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 1180464 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 1180464 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 1180464 28341501 ~ 28342847 (+) False LOC110500183
TU1974553 other downstream 1180464 28341501 ~ 28343209 (+) False LOC110500183

Expression Profile