RNA id: XM_036957529.1


Basic Information

Item Value
RNA id XM_036957529.1
length 2227
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110500177
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27656376 ~ 27685960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCATTACATCACTTTGCTACGACGTGATTGGCTGAAGGTCAATGCGTACTTCGCTCGCGGACTATCACAACCATATATCTCGACTCTCACTCGAGATATTATAGCTCTCATTGATTGCAAATATATTTTCGTTTAGTGCCCGTTTTGAGGATGGCCGAGAGCGAGGCAGACACGCCAAGCACCCCGATTGAGTTTGAGAGCAAATACTTCGAGTTTGATGGAGTGCGACTTCCACCCTTCTGCAGAGGAAAGATGGAGGAGATCGCCAACTTCTCCCTCAGAAGTAGCGACATATGGATTGTCACGTATCCCAAGTCAGgtACCAGTCTCCTTCAGGAAGTTGTGTATCTGGTGAGTCAGGGAGCGGAACCAGATGAGATTGGTCTAATGAACATCGATGAGCAGCTTCCTGTTCTGGAGTACCCTCAGCCTGGCCTAGACATTATACAGGAATTGACGTCTCCTCGTCTGATCAAAAGCCACCTGCCCTACCGCTTCCTGCCTACAGCCATGCACAATGGAGAGTCCAAGGTGATCTACATGGCGAGGAACCCTAAAGATCTTGTGGTGTCTTACTACCAGTTCCACCGCTCCCTCAGAACCATGAGCTACCGCGGAACCTTCCAGGAGTTCTGCAGACGTTTCATGAATGACAAGTTGGGATATGGTTCCTGGTTTGAGCACGTGCAGGAGTTCTGGGAGCATCGCATGGACTCAAACGTCCTCTTCCTGAAATATGAAGACATGTACAAGgacctGGGGACGTTGGTGGGGAAGCTGGCGAGGTTCCTGGGTGTCTCGTGTGACAAGGCCCAGCtggagaccatggtggagagctGCAACCAGCTCATAGAGCAGTGCTGCAACTCAGAGGCCCTCTCCATCTGCAGGGGTCGCGTGGGACTGTGGCAGGACATCTTCACCGTGTCTATGAACGACAAGTTTGACACGGTGTATAGACAGAAGATGGGCAAGTCTGACCTGACCTTTGACTTCGGCCTGTGAGGACCGGACCGACTGACCACAACGACACGAACACGGACTTacactcctcctcctgctgcctaAACACCGTAcactcctctgcctctcttcatcactcaataaatcagtcaatcaatgaatcaatcaaaCAATCACGTTTTAGATATACTGTATAACGCTGTATGAATGCTATGGTGGGGAATCATAAGTCCAGCCCAGAGTCAAGtatagagaccccccccccccatgacgcCCCTTTGATACAGAGCAAGTGTTCCGTTTTAGCTGTATCCAGGTCAGTTCCTATTTGACCTAGTCCTTAATTTTAGCACACGTTTTTCACTTTCAGTACATTACATAGCTTGTTTGTTATAAAAAGGCTTTCAATGGGCATTAGCTTAATCAGCACTAGACTTTTTGTATCAACCTTTCTTGCCGAGGTGAatggggaatgtgtgtgtgtgcgtgtgtgtacatgctCGTGTGTGAGCAAAATCACAAAAATGGCACATCACAACTGCCTTTTATATCAGTTCTGTTTGTTTATGCTGCTAAAGTGATGCCTTTCTCTGTCCTCAGACCCATAGCCACCTATAGAGTTACTGTACCACACTGAAACAACAGAGTATCCCTCCATGTTACCAGCATTCTCTGTGTGCTCTCCCCCAAGTACATGTAGCCCCTTTTCTCTTCCATTGCttgcatctctttctctcctcctcctcctccccctcctccctgctgtaaATGCCCCCAGAGAGACCAGTAGACCCCCCAACCCCCATCCCCTCTGCTCTGCTGGACACTTGTGAATGTCTTCATTGATGTGGATGTAACAACCTCAACCCCTCCCACAGGCTCAGTTCTGTGCTTTAGGACatccctctttcattctctctctctctgtatctctctctctctctctctctctctgtttctctcactctgtctgtatctctctatcgATTCAATTCAATTGGCTTTAGatacatgtgtttacattgccaaagcaagtggaatagaCAATAAACCAAAAGGGAAATAAACTCTCTTGTCAgctttttctctcattctctctgtttaCAACCGTTGGCAATCCTGCTGCAGCCCATCTCTACAAGGGTAATGGTGTGTACTTTTGTTTGGTTTTTATATGCCTGTAGGGTTGTCCTAACCTGAGCATAATGCATCGTACTTTACATGCTTGCTTGCTGGTTTATTAATAAAGTTATGTCTTCAGGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K11823 SULT4A1; sulfotransferase 4A1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1973439 lncRNA upstream 7888 27647402 ~ 27648488 (+) True G1722581
TU1973437 lncRNA upstream 9095 27644345 ~ 27647281 (+) True G1722579
TU1973423 lncRNA upstream 30156 27625020 ~ 27626220 (+) True G1722565
TU1973413 lncRNA upstream 31559 27603379 ~ 27624817 (+) True G1722555
TU1973382 lncRNA upstream 85606 27565879 ~ 27570770 (+) True G1722524
TU1973474 lncRNA downstream 4770 27690730 ~ 27690957 (+) True G1722612
TU1973481 lncRNA downstream 17799 27703759 ~ 27704087 (+) True G1722619
TU1973484 lncRNA downstream 20626 27706586 ~ 27706808 (+) True G1722622
TU1973488 lncRNA downstream 26433 27712393 ~ 27712634 (+) True G1722626
TU1973466 lncRNA downstream 29469 27715429 ~ 27719033 (+) True G1722607
XM_021577361.2 mRNA upstream 344767 27309199 ~ 27311609 (+) True LOC110500167
XM_036957507.1 mRNA upstream 445527 27170703 ~ 27210849 (+) False stab2
XM_036957508.1 mRNA upstream 445527 27170703 ~ 27210849 (+) True stab2
XM_036957506.1 mRNA upstream 495339 27152601 ~ 27161037 (+) True LOC110500163
XM_036957503.1 mRNA upstream 505997 27066938 ~ 27150379 (+) True cped1
XM_021577383.2 mRNA downstream 204505 27890465 ~ 27902897 (+) True LOC110500180
XM_021577384.2 mRNA downstream 219121 27905081 ~ 27923178 (+) True LOC110500181
XM_021577385.2 mRNA downstream 251859 27937819 ~ 27954437 (+) True LOC110500182
XR_005038564.1 mRNA downstream 568665 28254625 ~ 28257603 (+) False LOC118942914
XR_005038563.1 mRNA downstream 569022 28254982 ~ 28257603 (+) False LOC118942914
TU1972909 other upstream 834441 26821647 ~ 26821935 (+) True G1722079
TU1971907 other upstream 1325283 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 1614533 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 2019787 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 2044108 25611816 ~ 25612268 (+) True G1720836
TU1974515 other downstream 636560 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 655541 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 655541 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 655541 28341501 ~ 28342847 (+) False LOC110500183
TU1974553 other downstream 655541 28341501 ~ 28343209 (+) False LOC110500183

Expression Profile