RNA id: XM_021577383.2


Basic Information

Item Value
RNA id XM_021577383.2
length 2236
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110500180
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27890465 ~ 27902897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGACCAATCACTGTGCACAGAGCAGGCTTCGCAAAGTGTCATGGCGTCTCCCTTGAAGGGGGCTTGGACCTGGAAAATCTAGCCATTGTCAGTAGTGTCTTTCTCCTCTAAATAGGCCTGTTAAAAAACATTCACTTATCAAACGGGATATTTTTCAAGACAAAGACGTCACCATGGGGACTGTCCACGCCAGGAGTATGGACCCTCTCCCGATGCACGGGCGTGACATGGGCGTTCATCCCGACGACATGATTGAGGTGCAGGAGGCAGAACATGAGACTAAACAGGAAGTCCTGGAAAACAAAGACGTTGTTGTCCAACATGTCAACATTGAGGGCTTGGGCCGAACGAAAGAGGATCTGCTGGGCTATGAAATCTCAGAGGTCTTCGAAGCTAAAAACCTTATTGATGTCATGAAGAAGTCTCATATTGCCAGACAGAAATTGCTGCGTCTGGGCATTTTCAAGGAGGTGGAGGTCGTCATTGATACATCAGATGGTGCGGATGCGTTGCCCAATGGTCTGGATGTGACGTTCGAGGTGACAGAGATGAAGAGGCTGACAGGCAGCTACAACACCATGGTCGGCAACAACGAGGGCAGCATgGTGTTGGGTGTGAAGCTTCCTAACGTGTTTGGCCGTGCTGAAAAGTTAACCTTCCAGTTCTCCTACGGGACCAAGGAGACTTCCTACGGCCTGTCCTTCTTCAAGCCCCAGCCAGGCAACTTCGAACGCAACCTCACTCTAAACCTGTACAAAGTCACAGGCCAGTTTCCATGGAGCTCCctcaaagagacagacagaggagtctCCACTGAGCTCAATTTTCCTTTGTGGAGGACCAACCACACTCTGAAGTGGGAGGGTGTGTGGCGGGAGCTGGGTTGTCTGGCACGCAGTGCCTCCTTCGCCGTGCGAGAAGAGAGCGGGCACACCCTCAAGTCTGCCCTTTCGCACACCATGTCCATTGACAACAGGAACTCTGCCATCTTCCCCAAGAAAGGTGCCTTACTGAGGATCAACCagGAGCTGGCTGGCTATACAGGCGGAGATGCAAGCTTCCTGAAGGAGGACTTTGAGCTGCAGGTCAACAGACGGCTGGTCTGGGACTCGgtcctctccgcctctctctggGGTGGGTGTCTCCTCCCAATTGGAGGTAGACCATCCTCCATCGCTGACAGGTTCTATCTGGGCGGTCCCACCAGTGTGCGAGGATTTGGAATGTACAGCATTGGCCCACAGAGCGAGGGTGACTACCTGGGGGGAGAGGCGTACTGGGCAGGCGGGCTCCACCTGTACACTCCTCTGCCCTTCCGTCCGGGCCGGGGTGGCTTCGGAGACCTCTTCAGGACACACTTCTTTCTCAACGCTGGGAACCTGTGCAACCTCAACTACGGAGAGGGTCCAAGAGCACACCTACAGAGGCTGGCGGAGTGTATCCGCTGGTCGTATGGAGCAGGCATTGTGTTGCGTCTCGGGAACATCGCCAGGCTGGAGCTCAACTACTGCATTCCCATGGGGGTTCAGAGTGGAGACAgGATATGCGACGGCGTCCAGTTTGGAGCAGGAATCCGTTTCCTGTGACGTCATCACCCTGCCGCCCGGGTCCAGCAGCAGAGAGCACGATGGGAGAAGAGCATTGTCACTTGTTATCCGTTGAATATAACGCTAGCTGTGGGAGCCTATCAGAATGCACAGTCCTGGAGTGCCCCGCCCCCTTTTTTgatattaaccaatgatatccaCTATGTTTGCTGTGTTACTTTTCCACCAACCAATTACGTTTCTGGCCAAAGAGATTTGGGTGTATATCTCCCCTGCCTTCCAGGACTGCTGAATGCCCTATCCATAGGGAAGTGACTATTGGTTTTGGTTCTAGATTTATTTTACTGTGTTAGAACTCTTGCCAACTGATTTGTCAATAGAATCCTGTACATGTCAATATGTTGATGCAACAGAAGGGATCAAATTTAATGGGAGAGCATATAACCAGCACTTTGTTTTGATGACAACTCACTTAGCCCATGGAAGGGAATTGACAACTCATGTCAAAACGGTCAGTTCTGCTATTTGACGTGTAGAATTGAGAGTTGACTCCCCCTCTCCACAGCAGCCCCTGTGAATCAGAGTTGGGAACCCCAAGTGTGACCCACCACCAGTGCTCTTACTGTTAGTCTTCTTTTTAATGTTGTCTAAGTTAAGTTACACAATAAATCACATTTGTTCCCCTTAA

Function

GO: NA

KEGG:

id description
K07277 SAM50, TOB55, bamA; outer membrane protein insertion porin family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1973538 lncRNA upstream 68902 27820446 ~ 27821563 (+) True G1722671
TU1973517 lncRNA upstream 123025 27763030 ~ 27767440 (+) False G1722654
TU1973519 lncRNA upstream 123873 27763030 ~ 27766592 (+) True G1722654
TU1973516 lncRNA upstream 124259 27763030 ~ 27766206 (+) False G1722654
TU1973492 lncRNA upstream 160406 27729805 ~ 27730059 (+) True G1722630
TU1973628 lncRNA downstream 99370 28002267 ~ 28023525 (+) False G1722756
TU1973629 lncRNA downstream 99370 28002267 ~ 28011387 (+) True G1722756
TU1973660 lncRNA downstream 179373 28082270 ~ 28082564 (+) True G1722784
TU1973675 lncRNA downstream 216118 28119015 ~ 28119380 (+) True G1722799
TU1973712 lncRNA downstream 284363 28187260 ~ 28187624 (+) True G1722834
XM_036957529.1 mRNA upstream 204505 27656376 ~ 27685960 (+) True LOC110500177
XM_021577361.2 mRNA upstream 578856 27309199 ~ 27311609 (+) True LOC110500167
XM_036957507.1 mRNA upstream 679616 27170703 ~ 27210849 (+) False stab2
XM_036957508.1 mRNA upstream 679616 27170703 ~ 27210849 (+) True stab2
XM_036957506.1 mRNA upstream 729428 27152601 ~ 27161037 (+) True LOC110500163
XM_021577384.2 mRNA downstream 2184 27905081 ~ 27923178 (+) True LOC110500181
XM_021577385.2 mRNA downstream 34922 27937819 ~ 27954437 (+) True LOC110500182
XR_005038564.1 mRNA downstream 351728 28254625 ~ 28257603 (+) False LOC118942914
XR_005038563.1 mRNA downstream 352085 28254982 ~ 28257603 (+) False LOC118942914
XM_036957539.1 mRNA downstream 408121 28311018 ~ 28335924 (+) False LOC110501048
TU1972909 other upstream 1068530 26821647 ~ 26821935 (+) True G1722079
TU1971907 other upstream 1559372 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 1848622 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 2253876 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 2278197 25611816 ~ 25612268 (+) True G1720836
TU1974515 other downstream 419623 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 438604 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 438604 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 438604 28341501 ~ 28342847 (+) False LOC110500183
TU1974553 other downstream 438604 28341501 ~ 28343209 (+) False LOC110500183

Expression Profile