RNA id: XM_021577384.2


Basic Information

Item Value
RNA id XM_021577384.2
length 3987
RNA type mRNA
GC content 0.51
exon number 23
gene id LOC110500181
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27905081 ~ 27923178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTGTCGGTTGTGAGCTGGCTGTGGCTAGCTCGAACCGCTGTCATTGcgaggcaggtgtgtgtgtcatCAGGAGCTCATACACGTCCCCAGAACACGTTGGACTAATTCTGTTGTTTTTAAATTTGTGTTAATTAATACAGCCATCATGTTGTGGACAGCGAACAGAATCATTAGGAAATTCTCTACCAGCTCTaaTTATTACCAAAATAAGCTGAGACTGGCTCTGATTGGCCAGAGCCTGTTTGGACAGGAAGTGTACACCAACCTACGGAAGCAGGGCCATAGGGTGGTGGGCGTGTTCACTGTGCCAGATAGGGATGGCAAGGCAGACCCTCTGGCGGTAGTGGCGGAGAAGGACGGGACGCCAGTCTTTAAGTTCCCGCGGTGGCGTGTCAAAGGGGAGCCCATCCCGGAAGTAGTGGAGGCCTACAAGGCGGTGGGGGCTGAGCTCAACGTCATGCCCTTCTGCTCCCAGTTCATCCCCATGAACGTGATCGACCACCCGGCCCACGGTTCCATCATCTACCACCCCTCCATCCTGCCCCTGCACCGCGGGGCCTCCGCCATCAactgGACTCTGATCCAAGGGGATAAGAAGGCTGGGTTCTCCATCTTCTGGGCTGATGATGGTCTGGACACCGGTCCCATCCTGCTCCAGAGAGAGTGTCCTGTGGAACCCAACGACACGGTGGACTCCCTCTACAATCGCTTCCTCTTTCCAGAGGGCATCAAGGCCATGGTGGAGTCAGTGCAGCTGATCGCTGATGGGAAGGCCCCACGAGTCCCTCAGACAGAGGAGGGGGCCAGCTACGAGGGTATCCAGAAGAAGTCCAACTCCAAGgttaACCTCGCCCAGCCGGCAGAGGCTATCCACAACTGGATCCGTGGCCACGACAAAGTCCCCGGGGCGTGGGCGGTCATTGATGGTCAGACTGTGACTCTGTACGGGTCGTCCATGCTGGGGGAGTCGGTGCCAGCCGGACAGCCCCTGGAGATAGAGGGGGCGTCCCAGCCTGGTGTCGTCACCAAGAACGGCCTGGTTCTGTACGGGTCAGATAGCAAAGCGCTGATGGTGAAGAACCTGCAGTTTGAGGATGGTAAGATGATCTCTGCTGCTAAGTACTTCTCTTCAGGAGACACCGCCCGCGTGGAGCTGACTGATGACGAGAAGAAGATTGCAGAGGAGATACGAGACATCTGGAAAGGCATTTTGAGCAACGTTGCTGCCATTGAGGAAACCACAGACTTCTTCAAGTCAGGAGCTGCTTCTATGGACGTGGTCAGGCTGGTGGAGGAGATCAAGCAGAGGTGTGTAGGGTTGCAGCTGCAGAATGAGGATGTGTACATGGCCACCACTTTCCAGGACTTTATCCAGATGTTTGTGAGAAGGCTGAGGGGGGAGGACCAGGAGGAGGAGATGGTCATCGACTATGCAACTAAAGACGTCAACAACATGACGGTGAAGATGCCTTGGCAGTGTTTCATCAATGGCAAGTTTGAGGACGCAGAGAACGGCAAGACCGCCAATACCATAAACCCTGCCGATGGCTCTGTGATCTGTAAGGTAGCCTATGCGTCAGTGGGAGATGTGGACCGGGCGGTAGCAGCAGCCAAAGAGGCCTTTGAGGTTGGCCCCTGGGGCAGGATGAACCCTAGAGATCGTGGAACCCTGCTGTACAAGCTGGCTGACCTGATGGAGGAGCACCAGGAGGAGTTGGCCACCATAGAGTCCATAGACTCTGGAGCTGTCTACACCCTGGCCCTGAAGACCCACGTAGGCATGTCCATCCAGACCTTCCGCTACTTCGCCGGCTGGTGCGACAAGATCCAGGGCAAGACGATACCCATCAACCAGGCCAGGCCCAATCGCAACCTGACCTTCACCAAGAAGGAACCTCTGGGTGTGTGTGCCATCGTCATTCCCTGGAACTACCCACTCATGATGCTGGCATGGAAGAGTGCCGCTTGCCTCGCTGCTGGAAACACACTGGTCCTGAAACCTGCacagGTTACTCCTCTGTCAGCCCTGAAGTTTGCTGAGCTGACTGTGAAGGCTGGCATTCCCAAGGGAGTCATCAACATCGTACCTGGCTCAGGTGGGATGGTGGGACAGCGCTTGTCTGACCACCCTGACATCCGTAAACTGGGCTTCACAGGCTCCACCCCTATCGGCAAACAGATCATGAAAAGCTGTGCGCTGAGTAACCTGAAGAAGGTTTCTCTGGAGCTAGGAGGGAAGTCTCCACTCATCATCTTCAGCGACTGTGACATGGACAAGGCTGTGCgcatgGGTATGAGTTCTGTGTTCTTCAACAAAGGAGAGAACTGCATTGCTGCTGGACGCCTGTTCGTGGAGGAGTCCATACATGACGAGTACATCAAGAGAGTGTTGGAGGAGATAAAGAAGATGAAGGTGGGTGATCCTCTGGACCGCTCCACGGAGCACGGGCCCCAGAACCACAAGGCCCACATGGATAAGCTGGTGGAGTACTGTGAGGTGGGCGTGAAGGAGGGCGCCACGCTGGTGTACGGGGGCAAACAGGTGGACAGGCCAGGGTTCTTCATGGAGCCCACACTGTTCACAGACGTGGAGGATCACATGTTCATCGCCAAAGAGGAGTCCTTTGGTCCCATAATGGTGGTGTCCAAGTTCAAAGACGGTGACATAGATGGCGTGCTAAACAGAGCCAACGACACCGAGTTCGGCCTGGCGTCCGGTGTGTTCACGCGCGACATCAACAAGGCCATGTACGTGAGCGAGAGGCTGGACGCCGGGACCGTGTTCGTCAACACTTACAACAAGACCGACGTGGCCTCGCCGTTCGGTGGTTTCAAACAGTCGGGCTTCGGTAAAGACCTTGGAGAGGATGCTCTTAACGAATACCTCAGGACCAAAGCAGTGACTGTGGAGTACTAAGGCAGCCAGCCACTCCTAATAAACTGTAACAACGACTGAACACTCAATCCACCTGATCACGACTCACCAGTCAGTCTTGATCAAGAGTCCAGCTCCGCTTTCCtaacagcaggtgtgtgtgagagaggagacCTTTAATGTGTAGCCTACCCTCTGCCACGACCTCGTCTCAAGGGGCCTACAGTTTGAGCATTCTGGTCGAAAACTTGCATTATGGACACAGGCGGTTTTCCCCAAAGTTACAAAAAGGGAAATGCACATATCAAACGCAGAGGTGGATTTCAGTATTCCAGAGCCAAGGTGGATTTGACTGGATCAACACCCCTTCACTTTGAGTTTAAGGTTTCGGTTCCTCCACTCATTATGAAAGAACGTTTTGCTTTTCAAAAGCCGAGCGCTTCAGGCAATCTCCTCCTGCTCTGTTACAGTCACACATCTTTTGCAACATTTAATTTTAACTCAAGCATGCAGGTTCAAATTCGTATGTCATTTCTGCTCAGCAATGTTAGGTGCCACACTTCTGCTGAAGATAGCCACAACTCCCTTAGTTAAATTGTTATTTGTAAATATTTTATAACAAAAGAAAACACACTGAATAATTGGATATATTTTTTTGACATTGTATTTCTGTCAGAAAATGAGCACTGTAGGTTACAACACTAGATTATGCATTTTTAAAGCACACCAACCTACCTgcccctgttttggtaaaaaactGAGGGAcgggactggagaaatgtaactactctcaaatgtatagacagagcaatggatgcaaggactgaccttCAATgacatcaacattatagttttaaacGATGATTTGAGGCTATGTAGTTTACTTTGTTCACAAAAAATGAAGTAGAAaaagcttatatttggggttatgatggggtacgacagttcaACTAAGCTCATTAAGCATTTCTAAGGTatattcaagaatcaatgagtACATATCAATTTAAGTCAAAAAATATATGTAGAAACTGCAGATTGTCCCTAAGTTTTTAGTAAATAATACATATTAATTTAAATACGATATTAAATAAACTTCCTTTGAAAGAC

Function

GO:

id name namespace
GO:0009258 10-formyltetrahydrofolate catabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016742 hydroxymethyl-, formyl- and related transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0016155 formyltetrahydrofolate dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00289 ALDH1L; formyltetrahydrofolate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1973538 lncRNA upstream 83518 27820446 ~ 27821563 (+) True G1722671
TU1973517 lncRNA upstream 137641 27763030 ~ 27767440 (+) False G1722654
TU1973519 lncRNA upstream 138489 27763030 ~ 27766592 (+) True G1722654
TU1973516 lncRNA upstream 138875 27763030 ~ 27766206 (+) False G1722654
TU1973492 lncRNA upstream 175022 27729805 ~ 27730059 (+) True G1722630
TU1973628 lncRNA downstream 79089 28002267 ~ 28023525 (+) False G1722756
TU1973629 lncRNA downstream 79089 28002267 ~ 28011387 (+) True G1722756
TU1973660 lncRNA downstream 159092 28082270 ~ 28082564 (+) True G1722784
TU1973675 lncRNA downstream 195837 28119015 ~ 28119380 (+) True G1722799
TU1973712 lncRNA downstream 264082 28187260 ~ 28187624 (+) True G1722834
XM_021577383.2 mRNA upstream 2184 27890465 ~ 27902897 (+) True LOC110500180
XM_036957529.1 mRNA upstream 219121 27656376 ~ 27685960 (+) True LOC110500177
XM_021577361.2 mRNA upstream 593472 27309199 ~ 27311609 (+) True LOC110500167
XM_036957507.1 mRNA upstream 694232 27170703 ~ 27210849 (+) False stab2
XM_036957508.1 mRNA upstream 694232 27170703 ~ 27210849 (+) True stab2
XM_021577385.2 mRNA downstream 14641 27937819 ~ 27954437 (+) True LOC110500182
XR_005038564.1 mRNA downstream 331447 28254625 ~ 28257603 (+) False LOC118942914
XR_005038563.1 mRNA downstream 331804 28254982 ~ 28257603 (+) False LOC118942914
XM_036957539.1 mRNA downstream 387840 28311018 ~ 28335924 (+) False LOC110501048
XM_036957540.1 mRNA downstream 387840 28311018 ~ 28335924 (+) False LOC110501048
TU1972909 other upstream 1083146 26821647 ~ 26821935 (+) True G1722079
TU1971907 other upstream 1573988 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 1863238 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 2268492 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 2292813 25611816 ~ 25612268 (+) True G1720836
TU1974515 other downstream 399342 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 418323 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 418323 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 418323 28341501 ~ 28342847 (+) False LOC110500183
TU1974553 other downstream 418323 28341501 ~ 28343209 (+) False LOC110500183

Expression Profile