RNA id: XR_005038564.1



Basic Information


Item Value
RNA id XR_005038564.1
length 487
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC118942914
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28254592 ~ 28257603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTCCCTTCCTCTTAGTTGCCATCCATCTGCGCGCGCAATAGCGATCACGGAAAAACCTCTCCATCACTTACCGAGGTCTCGGTGATGATGGCGTCTTCCTCGTGTCTCGATATCGGGTCGATCGCTGTGTGTAGGGCGTCTCTGTGCTCCTCCAAATCCCCCGGGTTCCGCTGCTACCCACCCCAGCCAAATGACACCCCGCTGGGGCTACAGCAGAGGTCTCTCCCCGAACAGACGGCTCTACATCCACAGAGGTGTTCATGGAATGCATAGGTCtaattgggctcctgagtggcacagcggtcaaaggcactgcatctcagtgcttgaggcgtcactacagccacccaggttcgattccaggctgtatcacatctggccgtgattgggagtcctatagcaTCGTCCGGGGTAGACCTTCATTGtgaataggaatttgttcttaactgacttgcctagttaaataaaggttaaaaaaaatgcatC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1973743 lncRNA upstream 11128 28243290 ~ 28243497 (+) True G1722863
TU1973738 lncRNA upstream 18026 28236384 ~ 28236599 (+) True G1722858
TU1973731 lncRNA upstream 28945 28225460 ~ 28225680 (+) True G1722851
TU1973722 lncRNA upstream 53889 28200506 ~ 28200736 (+) True G1722842
TU1973712 lncRNA upstream 67001 28187260 ~ 28187624 (+) True G1722834
TU1974501 lncRNA downstream 8990 28266593 ~ 28266992 (+) True G1723558
TU1974519 lncRNA downstream 16768 28274371 ~ 28274634 (+) True G1723566
TU1974521 lncRNA downstream 18709 28276312 ~ 28276674 (+) True G1723568
TU1974561 lncRNA downstream 82580 28340183 ~ 28345660 (+) False G1723600
TU1974562 lncRNA downstream 82580 28340183 ~ 28340927 (+) True G1723600
XM_021577385.2 mRNA upstream 300188 27937819 ~ 27954437 (+) True LOC110500182
XM_021577384.2 mRNA upstream 331447 27905081 ~ 27923178 (+) True LOC110500181
XM_021577383.2 mRNA upstream 351728 27890465 ~ 27902897 (+) True LOC110500180
XM_036957529.1 mRNA upstream 568665 27656376 ~ 27685960 (+) True LOC110500177
XM_021577361.2 mRNA upstream 943016 27309199 ~ 27311609 (+) True LOC110500167
XM_036957539.1 mRNA downstream 53415 28311018 ~ 28335924 (+) False LOC110501048
XM_036957540.1 mRNA downstream 53415 28311018 ~ 28335924 (+) False LOC110501048
XM_036957542.1 mRNA downstream 53415 28311018 ~ 28335924 (+) False LOC110501048
XM_036957543.1 mRNA downstream 53415 28311018 ~ 28335924 (+) False LOC110501048
XM_036957541.1 mRNA downstream 53416 28311019 ~ 28335924 (+) False LOC110501048
TU1972909 other upstream 1432690 26821647 ~ 26821935 (+) True G1722079
TU1971907 other upstream 1923532 26329774 ~ 26331093 (+) True cep83
TU1971779 other upstream 2212782 26038302 ~ 26041843 (+) True G1721084
TU1971515 other upstream 2618036 25636335 ~ 25636589 (+) True G1720853
TU1971493 other upstream 2642357 25611816 ~ 25612268 (+) True G1720836
TU1974515 other downstream 64917 28322520 ~ 28324617 (+) True LOC110501048
TU1974550 other downstream 83898 28341501 ~ 28343734 (+) False LOC110500183
TU1974551 other downstream 83898 28341501 ~ 28342796 (+) False LOC110500183
TU1974552 other downstream 83898 28341501 ~ 28342847 (+) False LOC110500183
TU1974553 other downstream 83898 28341501 ~ 28343209 (+) False LOC110500183

Expression Profile