RNA id: XM_036957546.1


Basic Information

Item Value
RNA id XM_036957546.1
length 8833
RNA type mRNA
GC content 0.54
exon number 58
gene id utp20
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28351951 ~ 28376045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCATGATGCTTCATCCAATATGGCTGCGCCCCGGCATCAGGCATGTGTGTAAACACAGTTAGTCTATACATTGTTGTTTTTATACAAATTTGAAACGTggattacatatatttttttaacattcATCAGAAAAATAGACACGTCAAAAATGAAGATCAAATCCAAGTCGTCGTATCATAAATCTGAGAACACATTCAGGTTTCTCACGTTTGCTGAAAGGCTTGCCAATGTCAATATCGATGTCATCCATCGCATTGACAGAGCTGGGAGTTATGAGGAGGAGGTAGACACTTACTTTTCAGAAGGACTGACAAAATGGAGGGACCTGAATTTGACAGAGCATTTCACCACCTTCCTGAGGGAGGTGTCCAACAAGAGCCAGTCCTTCAACCTTCTGGTGTTCCATCAGAGGTCTATAGTGGAGAGCCTGAAGACTCACCTTAGTACCAAGAACAGCCTTGCCTGCCAGCCGCTACTGGACCTGGTGGTCCAGCTGGCTAGGGACCTCCAGATGGATTTCTACCCCCACTTCCCTGACTTCTTTGTGATCATCACCTCTCTCCTGGAGACCCAAGACACCGAGATACTGGAGTGGGCCTTCACCTGCCTCTCCTACCTCTACAAGTACCTCTGGAGACTCATGGTCAAGGACATGACCAAGATGTACAGCTTGTACAGTACACTGTTGGCACACAAGAAGGAACACATACGAAAGTTTGCGGCAGAGAGTTTTTCTTTTCTGATGAGAAAGGTGCCAGATCTTGACGCCCTTCTCAACCACATGTTCCTGGACCTGGAGGAGCACCCTGGGAAGGCAGAGGGGGTGGGACAGCTGCTGTTTGAGATGTGTAAAGGAGTCCGCAACATGTTCCACTCCTGCGCTGGCACGgcccTCCCAATTGCTCTGAGGAAGCTTGGACCAAGTGCTGACCATGAAGTATCTCTACCCTGGGATGCTGTCAGAGAGGCATTGGATCAAATGGCCCAGGCAGCAGCCAATCACGTAGAGAAAGAGCACTTTCTGGTTATGTGGGAGTCTCTACAGACGTGTGTGAGTGAGGCCCTACGGAACCTGAATAAGACTGATGTTGATGAGGAGGGTCAGGCCTCCGACCACTTGGAGCGTCTGCTCTTCATCCTCCATACCCTGGTGGGACACCGCAACGGAGCCAAGATCACCAAGCCAGACGCTGTCTGTCAGGCAGTTCATGAGTTGCTCCAGACCCCAGCCCTCCCAGGACCCTGCTGTAGACTCGTGCTCCAGATCATCTCCTCACTACTGCTGGGGGAGAATGTCTCCCTgcctaacacactcacacaggacACGGTCAAAAAGGTGTTCAGCAGTGGGATGGACCAGGACCTGATACTGGAGTTCACTAAGGAGATGTTCACCATGAAACAGTTTGAACAGtTCTTCCTGCCCAGTCTGCTACAGTACCTAGAGGGTTTTTTCTCCAGTCTAGACTCTGTGTCTCGTCACTCTGCCATGGAGGTGCTGGTCAGTCTCATCCTGGCTAAAGCCCCGCCCCCTACAGACGGCTCCATGGCCTTCGAgacctaccccctggtcttcaccGGAAAGAACCCCGGTAAGGAGCCAGGTGATGGGACAGAGAAGGTGTCAGTACCAGAGTTGATCCTCTCTCTGATCAGCCTACCGCAGGACCCGAACCAGACCATCACTGACCTGTCCCTGCCCTGGGCAGCCCTGGTCCTCCTGCCCCACCTCAGACCACTGGCAGCAGGGTGTGTCGTTCCCAGTCTGACAGCCCTCCTCAATCGCCTGCTACTGAATGTGGAGAGAGAAGCGCTGGGGAAAGGCGGTCTGTTTGTGGCCAGGCAGGCCCTCAGCTCCCTGCTCAGTCTGAATGGATCTGCTGAGGTTCTCTCCCTGGTGCCAGTGGAGCGGGTCAAGCCCATCATCCAgaaGTTCCCAACAGACATGTCGGCTCTGTTGCTAGGAGACCTCTACTACACCCGGCTGTCAGTCAACGGCTGCTCCGAGCACCTATCCCACGGTGCTCTGCTCGACCTGCACCAGATGCTGCACGTCAACCTATCCTCCAACAGCTCCAAAATCCGCTTGCTGACACTGAGGATTCTGACCCACTTTGAGGCTGACCTCAAACCGTCAGAGAGTGAGGACAGTGTGGAGGTCCAGCCTGTGTTTGCAGTGTGTTTTCAGGCTGAGTTGGTCCCTGCCTCCGTGCAGGACTACAGAGAGAAGCTGCTGCACCTCAGGAAGCTCAGACATGACCTGGTAGAGAGATCACTACCCCGGGGGACACAGGGGACCTTCCAACAGGTGCCTCTACGCTATCTTATGTCCATGCTGTTCGTCAACTTCAAACCCCTGTGGGACCCAGTCATTGAACTCATCGTgacccATGCCAGAGGAATGGACAACAAAGAATTCTGGAGGGTCTACCATGAGCAGCTGGAGTTGGTGGCAGGTCTTGCTGAAAAGGAGCTGCGTGAAGGCGACGATGATGCCGATGATGAAGATGGCGGCTCGGCGCTGCAAGGGGAGCCGGGCTGTGATGTCATCGAGAGCGGGGACGTGGGGGTGCTGTTCCTGCAGCGTCTGAAGATGACCTCTGAACCCAGCGAGAGGACAGACTTCACTAACTTCAGGGGCCTGCTGTGGAGGGCCATGGCTCTGGTCCCTGACCGCGTAGAACCACGCAGTAGGGAGCTCAGTCCACTGCTGCTACGATTCATCAGGAATGAGTTCTACCAAGCTGACCTGCTGGTGGCGCCTACTCAGGACCTGAGGAAGAGGAGCAGTCCTGCTGCCATGGAGGCTAGCAcggtgggagaggaagaggagaacagggaggaggaggaggatagaccAGAGAGGAAGATGCCACCAAAAAGAGCAGCAGCCAAGCAACTCATCGCTCACCTGAAGGTGTTTGCCAAGTTCACCAACCCTCGCTCTCTGTACCTGGAGAATAgcctcaatgagctgtatactcAGTTGCTGTGCCACCAGGACCAGCAGATTCAGAGGGCAGCATTGGAGTGTGTTCTGACCTACAAAGACCCCAACGTCCTCCCCTACAAGGAGAATCTGGAGAGGCTGCTGGATGACAAACACTTCAAGGATGAGATCGTTCACTTCAACATCTCAGAGGAGCAGGCCATGGTGGACGCCTCGCACAGGGCCCAGCTTATCCCGCTGCttatgagGGTTCTGTTTGGGCGGATGCGCAGTAAGACTGGCAGTAAGTTCCAGGGCAAGTCTGGCGCCATGCAGCGTTCCTCCGTCGTGCTGAGGTTCCTGGCAGGATGCCAGTCTGAGGAGCTGGGCATGTTCATTGACCTCCTGCTGGAGCCCGTCTGCCACCACGGACAGGgtcTGTGTCTAGCTGCAGTAGACAAAGCGATATCCGAGACGGACTTCTCTGCCGTCCTTCCTCTGGGTCGGCAGCACAGCCTGCTGAACATAGTCAACACAGTCATCAGTAAACTGGGCCACCTCATCAACACACACCTGCCCAGGGTGCTGCAGATCCTACTGTGTGTCACCGCCTCTGTCTCCACCATCCTCAAccagagagaacagTTAAAGGCCGGCTGTATCGCTCCTCTGAAGAACCTGAGGCGCCTGGGGGTCCTGCGGATCCAGGACTTCTTTGATGGCTTTGACTCGTACAGCTTCACCCCAGATGAGCTCGATGCCGTCTTCCAGGCTATCGTCTGGCCCCAGGTCTGCCGTCTGCCAACAGAGAGCCCCtactcccccacccccctcctcaaACTCATCCACGTCTGGAGCAAGAATCCCAGgtACTTCCCCCTCCTGGCCAAGCAGAAGTCTGGTCACCCGGAGTGTGACATCCTCCTCAACGTGTTCGCCCTGCTCTCCGCCAAGAATGTCTCCACTCAGACCGTTGCCATGGTGATGGACATCGCCGAGTCCTTGGTGACCACGAAGGACCTTCTGGTTTCGGAGGGTGAGGAGGCGGAGCTGAGCGTCAACGGCAGTGTGTTCCCCCAGCCACCAGAGGGAGCCTACATCTCTTTGGaGCATCTGAAACAGGGTGCCAGGCTACTCCAGCcccacatctccaccctgctacagTACCTCAGTGGCATCGTACGCAACTCTGTCAGACTCAAGAAGAAGAAGTTTAGATCCCAGGTGGCCAAGGAGCTCAACATCCTCTCAAAgctcAGCAGGTTTGTGAGTGATAAGGACCAGAGCTCAGTGCTCATCCGCCTGCTGCTGCCATACCTCCAGAAGGCCCGCAACCCACAGGAGACCGAGATTGACATCCTGTCTACAGTCCAGAACCTGCTAAGACAGTGTTCTAATCCCGCCTCCTTCCTCAAGCCTATCAGTCGACTGTTCTCCATCCTCCACAACAAGCTGCCCAGGCAGGCCCTCACCTCCGTCTTCCAGACTCTGGGAGACCTGGAAAGGGGACTGAAGTACATCACAGATACAGCTGCTAAGttGAATGCGTTTGACAGTCGTCACCTGGACGAGGTGTACTTCGACGTGCGTCTCACAGCCTTCCAGGAGGCCACCAGGAGGATCAACGACATGGACACGCTGGATATGAACTTCATCTACACCATGATGCACAACTGTTTCGCCTCCTTCGAGATTGGAGACATGTCCCTGGCTGACAACGCCACCttgtgtctgtctgctgttctTACACGTCTGGCTGCAGTGGGTCGGGGAGACGAGGACTACAAGGAGATAGTACAGTACACCATACTGGACGCAGTCAGGAAAGGACTGAGGAGCAAGACTGagAGTGTGCAGCATGACTACACCACAGTGCTGGCGTGTCTGGTGAAGACCTTCCCCACCCGTAGAGACTTCAGAGATCTGGTGCAGCTCACCGACTACAACGACCCCGAGTCGGACTTCTTTGAGCACATGAAGCACATCCAGATCCACCGCAGAGGTCGCGCTCTGAGGAAGTTCGCCAAGCAGCTGACGGAGGGTACGGTTGTGATGTCATCTCGTTCCCTCCAGACCTACATCATGCCCTACGCCATGACTGCCCTCTTCGACGAGAAGATGCTCAAGAATGAGGGTATGACGTCAGCCTCAGTAGAGGTGATAGGAGCGGTGTGTAGGAGACTGACCTGGTCTAAATATCTCTACTACCTTAAACACTTTGTTCACATACTGCAGACTGGACAGGCTGAACAGAAACTGGCTGTCAGTCTGTTGGTGACTGTTCTAGAGGCGTTCCACTTTGACCATGACACtctggagagagaaatggaggcaGCTAAGACCAGGGCCAAAGACGTTGTGAGCACCGTCGTTGATGAAGAAGTTGATGAGGAAGATGTGGCAGCTGTCGAATCAGAGGAGAGTGACACTGAGGAAGCCATGGAAACTGAAACAGACACGAAAACAACCACCATAGAAACGGCCACGGTTGTTACTATGGACACGGGCGCCGCTGAGACCGTTGAGGGTGTTGCTATGGAAACAACCGCCACAGAATCTATAGAGGAGCCTAAAGCTGTTCCGGCGAGGAAGCCGACCCCCTCCACTACTGCGGCTCCCAGTGGATTACCCCAGagcaaagcagagctggaggcccTGATCACCTCTATCCATGCCACTGTTCAAAATGCTGTCCTGCCCAGGCTACACAAGTGTCTGACCGCCAAGgtgaagcGAGATGAGGAGTGCAAGGCGGTAAAGTCTAAGGacgtgaaggaggaggaggtggccaGAGTTCCTATAGCCTTCGCCATGGTTAAACTGATGCAGACACTGCCCTCGACAGTCATGGACGTCAACCTGCCTGGCATCCTGATGAAGATGTGTGTGCTGCTGAGGAATCGTTTCCAGGAGATCAGAGACGTGGCTCGTAACACCCTGATTAAGATCGTCGAGACTCTGGGGGTCAAATACCTGCAGTACCTACTGAAGGAGATGAAGTCCATTCTGGTTAAGGGCTACCAGgTCCATGTGTTGACTTTCACGGTGTACCAACTTCTGTCTCACCTCGCCCCTAAACTGAAGCCTGGAGACTTGGACCACTGCATGGGCCTACTAATAGATatCTTCAACAGCGAGCTGTTTGGTGCAGTGGCTGAGGAGAAGGAGGTGAAGGGGATCGTCTCTAAGCTGATGGAGGCCCGCCACAGTAAGAGTATGGACTCCTATGAGTTCCTGGGCCAGTACTCTGGCAAGGACAGAGTCATACAACTCATACTGCCAATGAAAGATATCCTGGAGAACACAGCCAATCTGAAGACAGCCCGTCGCGCCCATGCAGTGTTGAAGAGGATAGTGTCAGGTCTACTGGTGAACCAGGCCATGGACCATCAGGCTGTACTACTGCTCAGCCATGGCCTGGTCTCAGAGAGTCTGCCCCTCGTCACCAAGCGGAACAAGGACAAAAAGCCCCAGGCGCCCCCGGACCCTCGCCtgcctcctcccagctgtctccTCTTGCCCCCCACCCCAAAGAGAGGAGGACTTAAAGCCCCCGTCAGTAGCCGCACCAACATGCACATCCTAGTGGACACTGGACTCCGGCTGCTCCATATGAGTCTGAAGAAGTCCAAGGTGAACTCCTCTGAGGCCTCTGCTCTTGAGATGCTGGATCCCTTCTTTGCTCTGCTACTAGACTGTCTCAACTCCATGCACGTCAAgGTGATAACAGAAGCTCTCTTAGCTTTTACGTTCCTGTTGCGGTTCTCCCTGCCAGCTGTAGAGCAGAATGCAGGCCAGCTCACCAAGCAGCTGTTTGTCCTGCTCAAAGACTACTCCAAGGCTGGCGCTGCCCGCGGAGAGAACTTCCAACTCGTCCAGAACTGCTTCAAGTCCATCACCATCCTAGTAAAGAACACGAAGACACACAAGATAACTGAGACGCAGCTGCAAGTGTTGCTGGGATACGCTGAGGAGGACATCTATGACCAGTCACGTCAGGCGACAGCCTTCGGCCTGCTAAAGGCCATCCTGTCCAGGAAGCTGGTAGTGCCAGAGATGGAGGAGCTGATGAAGAAAGTGGCCAAGCTGTCTGTTACCGGGCAGAACGGCATGATCAGGGTCCAGTGCAGACATATTTACCAGAAGTATATCCTGGATTATCCTCTGGGGAAGAAACTGAgatcacacctggacttcatcgtGGCCCAGCTCAGttaTGAGTTTGACACAGGAAGAGAGGCTGCTCTGGAGTTGATGGCCTATATCTTCCAAACCTTCCCTCAGAACCTGCTGCTGCAGCACAGTGGGTTGTTCTTCGTCCCTCTGGCACTGGCCATGGTGAACGATGACTCGGCTCGCTGTAAGAAGATGGCCGCTGTTGCCATCAAATCACTGCTGAGTCAACTGGACCAGCAACACCAGAACACCCTGTTCACCCTGGTCAACACTTGGCTGTCTGGAGACAAgGTGTCTCTGCGTCGTCTGGGGGCCCAGGTGTGCGGGCTGTTTGTGGAGGTAGAGGGGGTTCAGTTTGGCCGCCGTTTAGATGCCCTGCTGCCCCTCATCGAGAAAGAGATCCACCCCAACAACTTTGAAGACatTGAGGAGGAGCAGGATGAGAAGGCAGCAGACAGGCTGCTGTTCAGTTACCTCACCCTGGTCACCAAACTCACCAAGGACTGTAGCCTACTGGAGCTCAGCAAGCCTCAAGACACTCTCACTAACATCCTGGGTCATGTTGAGACCCACCTGCGTTACCCTCACTGTTGGGTGTGGTTGACTGCCTCTCAACTGTTTGGTCAGCTGTTTGCTGCCCACCGGCCAGACCAGCTGGTTgcccactggagagaggagaccacaGAGAAGGGCAGTGCCAAAAACACCACCACACCGGAACCTGTGGCGACCACGTTCCTTACAACCAACCTAGACAAGAAGATGAGAGAGTTGGTCCTGTCATTCTGTCACCAGCTCCAGTCGAAGTACCTGGACACGTCAACAGGAGAACAGGTGATCAAGAACCTGCTGTTCGTCGCCAAGGTGATCTACCTGATCTCACCCGAGTCTGAAATCCCACCTGCCCGGGaagtagaggaggggggggaggaaGAAGAGATGGAGAACGGAGGAGAGCTGGAGAACGATGGAGAGAAAGGTGATGAagaaaaggaggaagagaagcaggaggaagaggaggatgagaaggatGATCGTCCTCCATCCTTACTGTGGATGATGAAGAAGCTGTCTCTAATGGCTAAGAGGGAAGCTGCAGACACGCCCAAGATACCCCTCAAGAGAACATGTGTGTTTAAGTTCCTGGGGGCCATAGCTGTGGACCTGGGTAAAGACAGGCTGGGTCCTTACCTCACCACCATCATCGCCCCTCTCTACAGAGAACTGGACAGCACCTATGCAGACCAAGACCCCACCCTGAAAAACCTGTCCCAGGAGCTAATAGAGCTGTTGAAAAAGCAGGTGGGGCTACAGACCTTCTCCCTGGCCTTCTCAGCCGTTCAGAAGGATGCCTCACAGAGGAGGGCCAACCGCAAGAAACACAAGGCTATGCAGGCGGTGGCTAACCCTGACATCGCAGCCAGGAAGAAGCTGAAGAAACACAAGAACAAGATCGAGGCCAAGAAGAGGAAGATTGAGTTCCTGCGGCCTGGCTACAAAGCCAAGAGACAGAGGAACTCACTCAAGGACTTGGCGATGGTGAAATGATGTTATCCATTATATAGCAAGGATGGATGAGAAGACCAGGCAACCGTGTCCTGCTTAATGCAGGAGCTGACAGTCGCAAGCCACCTCTGTATGAATTCTCAGTCAAGGATTTGATATGTTTGTGCATTTAATgtaactttttttaaattaaaaataagTGCTACTTTCTTTGAACAGTA

Function

GO: NA

KEGG:

id description
K14772 UTP20; U3 small nucleolar RNA-associated protein 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1974561 lncRNA upstream 6291 28340183 ~ 28345660 (+) False G1723600
TU1974562 lncRNA upstream 11024 28340183 ~ 28340927 (+) True G1723600
TU1974521 lncRNA upstream 75277 28276312 ~ 28276674 (+) True G1723568
TU1974519 lncRNA upstream 77317 28274371 ~ 28274634 (+) True G1723566
TU1974501 lncRNA upstream 84959 28266593 ~ 28266992 (+) True G1723558
TU1974571 lncRNA downstream 27907 28403952 ~ 28406128 (+) True G1723608
TU1974763 lncRNA downstream 103995 28480040 ~ 28480313 (+) True G1723764
TU1974765 lncRNA downstream 104576 28480621 ~ 28484397 (+) True G1723765
TU1974790 lncRNA downstream 144716 28520761 ~ 28521050 (+) True G1723790
TU1974791 lncRNA downstream 145028 28521073 ~ 28521505 (+) True G1723791
XM_021577388.2 mRNA upstream 9103 28341423 ~ 28342848 (+) False LOC110500183
XM_021577389.2 mRNA upstream 9103 28341472 ~ 28342848 (+) False LOC110500183
XM_021577390.2 mRNA upstream 9103 28341472 ~ 28342848 (+) False LOC110500183
XM_021577391.2 mRNA upstream 9103 28341472 ~ 28342848 (+) False LOC110500183
XM_036957540.1 mRNA upstream 16027 28311018 ~ 28335924 (+) False LOC110501048
XM_036957548.1 mRNA downstream 3777 28379822 ~ 28390596 (+) False LOC110500185
XM_021577393.2 mRNA downstream 5081 28381126 ~ 28390596 (+) False LOC110500185
XM_036957547.1 mRNA downstream 5081 28381126 ~ 28390596 (+) True LOC110500185
XM_036957570.1 mRNA downstream 248717 28624762 ~ 28635643 (+) False LOC110500191
XM_036957561.1 mRNA downstream 248730 28624775 ~ 28784559 (+) False LOC110500191
TU1974550 other upstream 8217 28341501 ~ 28343734 (+) False LOC110500183
TU1974557 other upstream 8217 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 8742 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 8742 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 9104 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 836774 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 882215 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 882616 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 882616 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 1514241 29890286 ~ 29891957 (+) True G1725312

Expression Profile