RNA id: XM_036957547.1


Basic Information

Item Value
RNA id XM_036957547.1
length 4020
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110500185
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28379822 ~ 28390596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattgGATGTGCGTTGATTCGGAACTAGAGACTGACAATGAGCTATATTCAAGAAGCCAACGTTTCAAATAGTTTTTTTCTGTAGAAAGAGCTGCAAATAAGCACGTAAAATACTGTGGAATTTTGAACGCACTCCAAAAGAACGGAAGAATAATTTATGTACACTCGTATTATACCTAAATGGATGTACATCATTGGATGATGCCCCTATGCAAAAGGACCAGGCTATGATACACAAATTAGATAGCTTGTGTTTCAACGGAATCAATCAATTTAACATTTGCAATTACTCAAGTCCGGGGTCGTCGATAGCTGAGCCGCAATGGTGGAGAAGTCCGACCGGGCACCGCTACTGGACTGGGAGGAGGTTCCTCCGGCGGAGAAGCCTGTTCCCACACCAGTACAGGAGAAGGACGTCAAGGGGCCGAGCCCCGCCAATAGTCGGGCGTCGGGATGCACTGCGCCGGGGATAGGGTGGAGCACCAGTCCGGGGGGTCCTGAGTTTTTAACATCAGCAGTCTCTAGCATAGACACATCTCTCTCATCCAGGAGCACGATCCCCACCCCTGCGGAATGGGATGCTCAGTGTCCCGACAAGGATGACCATACCCCGGCCTCAGGACAAGGAGAGGTGCCGCACGACATCATGGTGAAATGGGAAGAAAAGGATCCGATCGTGGCCGTGTTTGTGGTTACATTTGATACAAGATCAGGTAACATGTTAGAGTGGTGTCTGCCAGGGGACATGAACCTGGAGGGAGTAGAGTTCAAGGCTATGGCCAGCGGCTCCCACAGAGTCTCCAGCGACTTCATATACTTCCGTAAGGGCGGGTACTTTGGCCTGGCGTGCTTTGCCAACATGGCGGTGGATAGTGTGGTGGAGAGGGGGGCAAGAATGAAGTCTGTGGGTATCCTGTCAACATCTTACACCCTGCTGTACCGATACATGAGCTTCCTGGAACACCAAGTCAGGCTCCAGTTGAAAACCCCTGGCCAGTACTCTCCTCTGGAGGCGTTCTTTGAGGATAAGAGATCAGTGCTGCCCCCCGATGGGGAGAGTGTGGTTACTGCATGTCCTGGCAGTGCCTGGGGAGCAGCACTCAACCACTGTATGCACCCTGAGATGAAGatCACCCACCCAGCTGGCTGCATGTCTCAGTTCATCCAGTTCTTTGGGGAGCAGATCATGGTCCTGTGGAAGTTAGCTCTGCTGAGGAGACGtatcctcatcttctctcctccacctgtAGGGGTGGTCTGTTATAGAGTGTACTGCTGCTGTTGCCTGGCCAATGTGTCCATCCCGGGGGTGGGCGTGGCCGTACCAGAGTTCCGCCCCTTCTTCTATGTCAACGTGGCAGACATTGATACCCTGGATACGGAACTGTCCTACGTAGCGTgcaCCACAGAGAAGATCTTTGAGGAGAAGCGGGACCTGTACGACGTCTATGTGGATAACCAGAATGTGAGGACGACTAGAGAGAGTCTGAAGCCTTTACTGCGGCTCAGCGCTGCAGACCGAGAGAAGTACCGCAAACTCACTGAACAGAGGCAGATGCTGTTATATTCTCAGGAGGAGAATGGAGACTGTGTGTCCAGTGAAGAGGACCACTTCATTCTGTCAGTATATTACACCAGGATCCAGTCTACAACTGGCGTTTATAATAAAGAAGCCttcaaaattattattattattacatttttttttacacttaaGCAGTTTATTTCTATATACAAACAAAATAAAATGTCCATGAaaacattgtttaaaaaaataagtacTTGTCATTTTTTCTCTACCGTTGTAGGTTTTTCCTGGAGCAGAATAACCGTATCTTCCAGACGCTCAGTGAGGTGGCAGGGAGACCTGAGCCCATCCTAACCCAGGAGAGTGTGAGGGCCATGGGGCTAGACCCTCACGGAGACAGGCTCTTCCTGCTCCACCTGCTGGAGACATACGGCTATGACAGCCTCCTGGTCACCGAGCACCCTTGCTGCAGCTGAGGCCCGGGTGGCACACTGACTGACCTACAGGATCCTGCACACTCAAGACACACAGACTCAATGCAGACAGTCTGGACTATGAGAGGTCAGAATATGTTGGCAAGGCTGAGACAaaggcctgtattcataaagcgtctcagtaGTGCTGATCTCAGATCCGTTTAGCCTTTTAGAGCTCATTGAATAAGacttacatggacaggggggggacctgatcctagattagcaTTCCTACTCagatgctttatgaataaggGAGACCCTCAGGCCAAAAAAAGCAAATGAATGGAGAGAGTCACGGAACAAGAAAAGTTCTTGGTTCTTGGTACTGTCCTATGACATTCATGGGTGCTCAATCTGGACTGTTAACCATCGCCTTCCTGCCTGTCAATAAAATGTTCAGTACAGAGGAATGTCATTCACGTCTATCCCCAACCCTCTTTTTTTCTGGAGGAGTGGAGCCAACCAGAAACATCCTGGAACTCTGGAGATTCGGTGCCTGTGAGCAGAACTTACCAAGAAAGTCATGCTTACGGTTTCCTTATGTTTTCAAATGGGGAGTCAAATCTAAACTCTGTGGTAATGTCCTCAAACTGAGGGAGGATTTGTCACTTCTCTTAATAGGACAtctatttatttatgtttttgagAGAAGAAATCACAAAATGTTGTCTTTAAATAGAAAGGGATCTGTAGAATGTGTTTTATTATAAAATGATCCCATTAAGTCACTGCTAAGCCCAAAACCACTGTGGTCAGCATTGTATAGAAATGGCCACCAACACCATCCATAATCATGATACTACAGACCTGATACTAAGGGCCCGATTCAATCCGTAGCGCTGAAGGTCCACGCTACAGTGTGATATACATTTAAAGGCCATGTTTTACACGTTCACGGAGACTGCATTCCCGGTAAACACCGGGAATATGTCAACTCATTCGGAAATGACCTTCACATTTCAGTCATGCAGCTTCCGTGATATGGACTGAATCGAGCCCTTAAGTACACAATACTAGTTCACATGTGGATTTGGTTTCCGGTGAAAGAGGGGTCAGGACTCACCAGCACACTTTCTTATGATGTCCAACATAGAAATGTAACAACTTTATATGACTTTAAAAATGTACTTGTGGTGTTTCCTCAATTCTCTGTCAAATATACAAAGAGTGAAAAATGTGAATGAGCTCGTGGCTCAATGGTTATATCCTATCCTTCAGACCAAGAGGTCGTAGGTTCAAACTTCATTTCTTATACTGTTGTGTACGTTTCAGCGACTCTCGATGTCAAACATACAAAGAGTGTGGCATAAAATGTGATGGAGATGGTGGTGCAGTGGTTCAATTACTGCCTTGTAGACCAAGAGGTTCCAGCTTCGAACCTCATCTATTCAGCCATTGTGTACGTTTCCGCAACTCTCGCTGTCAAACATACAACGGGAAGGGTAAacaatgatgatggtggtggttcaATCTCTACCTCAAAGCTTTGAGGTTGTGGGTTCAAAACAATGTCAAACATACGAAGGGAATGGTCAAAAGAAATACTGTGTTCATTTCTGTTGGGGTTTAAAACTGTTTTTTGGTTTGCGCCTCTGAAATTCTGACTGTCAGAAATACAAAGAAAAGCAGATGTACAGTAatggaccagtggaggctgctgaggggaggacggctcataataacgacTGGAACGGAgataatggaatggtatcaaacacatggaaacaaatgtatttgataccattccattgattctgCTCCAGACATTACCACGAGCGTGTCCTCCCCAGTTAAggttccaccaacctcctgtgatggagACACTTTACGCCAATGATGGTAAACTGTGAAtgacaagtagcctagtggttatgagcgttgggacagtaaccgaatgGTTGCTGTTTTGAAGCCCAGAGCTgaataggtgaaaaatctgttgatgtgcccgtgagcaaggcatttaaccctaaaTTACAAAGAATGTTGAAAGAAATGTAAACAAAATGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1974561 lncRNA upstream 35466 28340183 ~ 28345660 (+) False G1723600
TU1974562 lncRNA upstream 40199 28340183 ~ 28340927 (+) True G1723600
TU1974521 lncRNA upstream 104452 28276312 ~ 28276674 (+) True G1723568
TU1974519 lncRNA upstream 106492 28274371 ~ 28274634 (+) True G1723566
TU1974501 lncRNA upstream 114134 28266593 ~ 28266992 (+) True G1723558
TU1974571 lncRNA downstream 13356 28403952 ~ 28406128 (+) True G1723608
TU1974763 lncRNA downstream 89444 28480040 ~ 28480313 (+) True G1723764
TU1974765 lncRNA downstream 90025 28480621 ~ 28484397 (+) True G1723765
TU1974790 lncRNA downstream 130165 28520761 ~ 28521050 (+) True G1723790
TU1974791 lncRNA downstream 130477 28521073 ~ 28521505 (+) True G1723791
XM_036957546.1 mRNA upstream 5081 28351951 ~ 28376045 (+) True utp20
XM_021577388.2 mRNA upstream 38278 28341423 ~ 28342848 (+) False LOC110500183
XM_036957570.1 mRNA downstream 234166 28624762 ~ 28635643 (+) False LOC110500191
XM_036957561.1 mRNA downstream 234179 28624775 ~ 28784559 (+) False LOC110500191
XM_036957560.1 mRNA downstream 234179 28624775 ~ 28787436 (+) False LOC110500191
XR_005038567.1 mRNA downstream 234179 28624775 ~ 28787436 (+) False LOC110500191
XM_036957553.1 mRNA downstream 234180 28624776 ~ 28787436 (+) False LOC110500191
TU1974557 other upstream 37392 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 37917 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 37917 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 38279 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 822223 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 867664 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 868065 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 868065 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 1499690 29890286 ~ 29891957 (+) True G1725312

Expression Profile