RNA id: XM_036957571.1


Basic Information

Item Value
RNA id XM_036957571.1
length 6303
RNA type mRNA
GC content 0.53
exon number 29
gene id LOC110500191
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28624762 ~ 28787436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCTCCCGCCCCACAGAGGTTCCCCGCGCCCAGTTGCTAAGGTTTTCCCGAGTACGCGCCGACGGCACGGATACGCGCACTCCAGATTCCGTCCTCTGTTAGACATGGCGGCGGATCTAAACCCAGACTGGCTCTCTTGCCTGCCTTCTTCTTGGAGTTATGGGGTTACTCGGGACGGAAGGATATTCTTCATCAATGAAGAAGCCAAGAGTACGACCTGGCTGCATCCCGTCACCGGAGAGGCCGTCATAACGGGGCACAGAAAAACCCCAGATTTACCAACGGGATGGGAGGAGGGATATACGTTCGAAGGAGCCCGCTGCTTCATCAAtcacaATGAGCGGAAGGTGACCTGTAAGCATCCAGTCTCTGGTCTTCCTTCACAAGACAACTGCATCTTTGTCGTCAACGAACAgccaaAGGCTCCAGAGCAGGCTCCATCAgaggagagtgacagagtgaaGAAGGAGCGCCCGATGAGCACCATGAGCGAGGCGTCTAACTTCACAGGAGGGTCAGACTACAGCACCTACCCTGGCAGCAGCCCCGCCACACGGCCTTCGAGGTCTTACAAAAAGGTCCACAACTTTGGCAAGAGATCCAACTCTATTAAGAGGAACCCCAATGCCCCGGCGGTCAAGAGCAACTGGCTTTACAAACAGGACAGCACGGGGATGAAGCTATGGAAGAAGAGGTGGTTTGTGCTGTCTGACATGTGCCTGTTTTACTAtagagATGAGAAGGAGGAGGGCATCCTGGGTAGTATCCTGCTGCCCAGCTTCCACATCTCCATGCTGTCTGTCGACGACCACATCAGCAGGAAATACGCCTTCAAGGCGACCCACTCCAACATGAGGACCTACTACTTCTGCACAGACACGGCCAAAGACATGGAGTCCTGGATGAAAGTGATGACGGACGCAGCACTGGTCCACACAGAGCCAATCAGAAGactggATAAGTTGAAGGTGGACCGCTGCTGTCCCCAGGAGGTGAACAACATCCTGAACCACAACCGGGTCCTGACCAGGCCAGAGATCCAGAACAACGAGAGGAACCGTGAGCCGCACCAGCCCTCCCTCGCCCGCAGCATGGACCACACAGACGGGGACAGGAAGCACAACAccctccagagagagagggaacgctACACGCTGCAGAGAGACGGCGAGAGATACTCCCTTCAGAAAGACGGGGTGAGCTACACGctgcagagagacggagagaggtaCCTGTTGCAGAAAGACGGCGAGCGGTACGCCCTGCAAAAAGACGGGGAGCGGTATTCCTTGCAGAAAGACGGAGGCGAACGATGTGCTGGGCAGAAAGATGTTCAGATGGAGAAGTACGCACCTCAGAAAGACGGGGAGAAGTACTTGGtacagaaagatggagagagatatgcACTGCAAAAAGGAGAGCGATACACCCTCCAAAAAGATGGACAGAAATACAACCTCCAGAAAGGGGTAGAGAGACAAACGTCTATGACTGAGAAAGATCGGTCAGATCGTTATGGGACCCTTGATGAAAGGCAGAAGTATAAAACCCTACGGGAAGGAAGTAAGTGTGGTACCCTGAGGGATGGAGATAAGTATGGGACGCTCGATAAGTATGGTACCCTTAGGGAAGTGGATAAGTATGGAACCCTCCGTGAAGGGAACAAGTATGGATTCCAGAGGGATGGCAGTGCTGAGAGGCCTCTGACTAAAATCAACAGCATCAAACTCCAACCAGCCCAGGCAGCAGCCATCGCAGCAGCAGTTACAGCCTCCCGCCAGGTACAGGTCTCCCAGCACATGGCCCCACCACAGGTCAACGGCTCTGGGGAGCGGGCTGGGGACCACAGCCCAGGGGAGGTGGTAGGTACCCTGGGCAGAGGAGCAGGAAAGGCCCAGGACCCGCCTccgaaccagacccagaaccagcaGGCCCAGGAGCCAGAGAAAAGTCTGACCAGAACCAACTCCATGAGGCAGCTGGAGAACTGGGTTAGGACCCAGAGGACACAAGAGGATGACGATACCAGGagCATCACCTCCTACCAGACCTTACCCCGCAACATGCCCAGCCACCGTGCCCAGATCGTTCCCCGCTACCCCGAGGGCTACCGTACCCTCCCCAGGAACATGCTGTCCCGACCCGAGAGCATCTGCAGCGTGGCCGGCTCCGTCTACGACCGCGCCCTGGCTCCCACGTCCAACTCAGACAAGAGGCGCTCCATGAGGGACGACACCATGTGGCAGCTGTATGAGTGGCAGCAGAGGCAGGCCTTCTCCAGGCAGggcccaccaccaccaggccacTACGGGACCCTGCCCAGCCCCAAGACCATGGGGAACATCTCTGTGCACCAGGGGGTGGCCCACTCCATCCCCACATCCCCCTCCCATGGATCCCTGGCCCTCTACCACACCTTCTCCCCTCCGGGCCAGCACCGCAGAGACAACCCACCAGGGTCAACCAGGTCCGAGGTGTCCTCACCCGTCTTCAGAGGGGACCAGACTATGACTATAGAccgcaggcacaggactcacctcACCAAGtataacTACCCACCTGACCGCCGGTCCATGCCAGCAGGCATCCCAGTGCAGACCATTACCCCACAGTCACTACAGGGCAAGACGCCAGAGGAGCTGACCCTGCTGTTAATAAAGCTGCGTCGGCAGCAGGCTGAGCTCAACAGCATCCGGGAGCACACTGTGGCTCAGCTAATGATCCTTAGCATGGAGGGGCCCAACGCCAAGAGTGAGGTCCTGTCTCATCACCTTCAGAGGAACCTCATGTATCTGGACAGCCAGACGAAGGACAATGAGCCGTTAATCTTCATGATTCACACTATGATTGAGAACTCTGCTCCAAGGCCTCAACTGTACCAGCAAATCAGCCCCGAGGACTACAAAGACAACTCCTACAGCCACCAGAGGCCAGAGGACATAGACactaAGCTGAGCAGACTATGTGAGCAGGACCAAGTGGTGAGAACACAGGAGGAGAAACTACAGCAACTACACAGAGAGAAGCACACCCTGGAGACGGCTTTGCTGTCTGCCAGTCAGGAGATAGAGCAGAGCTCTGACAACCCAGCAGCTGTACAGAGCCTTATACAGCAGAGAGACGTACTGCAGAATGGACTGCTCAGTACCTGTAGAGAACTGGCACGAGTCAACACTGAGTTGGAGCGGTCGTGGAGGGAGTATGATAAAATGGAGTCTGGCGTCTCTCTGGCCAAAACCAACCTGTTGGAACAGCTAGAGGCCCTGGGCAGCCCACAGACGGAACCTCCCAGCCAGCAGCATGTCCACATCCAGAAGGAGCTGTGGAGGATCCAGGATGTGATGGAGGTTCTGGCCAAGAACAAACCCCAGAGGACCACTGACACTGGTTTCCTTGGTTCCAAACCCATCTCAAACCTACAGAAGAACGAGCAAGGCCCAGACTACCGTCTGTATAAGAGTGAGCCAGAGCTGACCACTGTAGCTGAGGAGGTGGACGATAACAACGGAGAGGACAATGACAAGGACAGACTACAGACAGGGCTGACCACTGACAAGGAGCCTGCGGCCACTAAAGtcCCATTAGGAGTACCAGTCTACCCAGTGGGTATCGTGCCCCCCAGGACCAAATCCCCCATGATCCCCCCAGAGTCCTGCACCATCGCCTCCTACGTCACCCTGAGGAAGAGCAAGAAGTCTGACCCCAGGACTGAGCGTCCTCACAGTGCGGTGGAGCAGACGTGCGGaccgggggagagggagagcggcaGAGCCAGGATGAGTGTAGAGGAGCAGCTGGAGAGGATCAGGAGACACCAGCAGGCCTCGCtcaaggagaagaagagaagtagcagcagtatttCCCCCTCAcgctctccatccttctccaagGAGAACCCCTTCATTACACAGGTCAGGCGAGAGGTGGTGTTCTCCACAGGCACCCAGGAGCTGGAGGCAGCACTGCAAGAcctggaggaggtcagagaccgaGTTACAGAGCAGCTGGAGAGGGACAGAACTGCAGCtgtggagctggagagagaccgAGGTGCAGAACTGGAGCTGCAGAGAGACAGGGCTGCAGCAGCTGCTGAAGAAGAAATGGAGAGGGGTCGAGCTGCAATAGAAAAACTGGAGCGAGACATGACTGAGGTGGCTGCAGTGGTGGAGCAGGAGATGGCCAGGACTGCTGTGGCTGTAGAAGAGGAGTTGGACAGGACTGCTGTGGCTGTAGaagaggagctggagagagaccgGGCCGCAGTAGCAGCAGCTGCAGAAGAATTGGAGAGGGCTAGAGCTGCAGCTGAAGAACTCGTCAGAGGGAGGACTGCAGTGTCTCCAGGAGAGGCGCTGGATATTGACACGGCTGCAGTGGTGGAGCTGGAGATGGAAATCACTGTGGTGGAGGAGATCAGCTACAGAGCTGAGGAGGTGGATGTCATCCCTGTCCCCAGGCTGAGTGAGGAGGAGCCACAGCCCCGGACGGAGAGCTCCAACATGGACACAGAGGTGTCAGAGACCCAGGTGATGGTGATATCAGATCAGGGTGTGAAGCCCTTGTATGTACAGTACCTGATCCCTGGACAACATCAacagcagggggagagggagacggagaggagaaATACCCACACTCCCAGCACCCTCATTCCCCACAACAGTTTGCCAGCTGCTGTGTCAGAAGCACTGACTCCTGAACCTGAGGAGGATGTGATGCAGAGTGAGGCGATGCGAGGGGAGGCCCCGGAGCATGAGACCCAGGGGAACAACATTGACATATCCTATGAACTACCAGCAGAGGGAGCTAAACTCAACAACCTGATGGCAGTGAAAAGCCTGCCCTGTCcgccccagtcctcctctccttctcctcctcaacTCACTGACGGATCCCACTTCATGTGTGTGTAGACGTGTCGAGGAGGTGGTTATGTGAACTCAACTACACTCACCCAGACATTGACCTTTGTGAGCAGTGACTCATAAGCGATGCCAGTCTGAAGATCCAAGATGGCATCCTACAGAGCCAAGATGGCACCAGTCAGCCTGCACAGAGCATGCCCAGTAGCTCTCTGTGTGTATACAGTAGAAACGACTgtagccagacagacagaaagagtaCATCCACAGGCCTGCTCGTATTACTTACTGCCTGCCTACACAATAACTGCGATACAAAACTCTCTCATTCACACAGAGATCTCAGAGGACAAGATAGTATTACAGGGTGATAATTGATTATTATTACAGGTATTATGATGGTCTGTTATTTTGGACATGTTCTGCGAGGATGTCTTGAGTGTCTATGAGCTGAGCACTGCTGTAACGAGGAGGGGACTGtacagttgtaaataagaacattAGAAGAGTCTCACActgggaagatctcaattgcatactcctcgcatcctgtctcctcgtctccttctcaaagggagggacctctggctttctcatccaatgggttttgagaaggagacgaggacCTGAGGACTCGAGGAGAATGCATTTGAGATCGTCACAAGCTATGGAGAGGGCCAAGCAACAAATCTACACACACGAAGGCAGTGCTTTACTTTAACCACACGGGGGCGCCAATATTCTCTTAcgggttttattttttttactggttTTACTCCCATATAAGTTTTTAACCTGAGGCCCTAAAAGTTTCATTTCCCACATATTCTACACTGCACATTCCCCCATTGTTCATACACATtgttaatatataaatatataaaacatatagAATGAACTATCTATACAATGGGTTTATACTTCAATAAGGTGCCACCATATTGCTGCTGATGGACAGagtttaaatattttattaaggTTGTGTTTATTTATGTCGGGAGGATCGGGATCTGGTCGCCGCCGACAACCACATGTGAATGTCCTGGATTAGAATTGATCTGCTtctctgtttttttatttctttctATGGCTGAGATATATTTAAAGTAAAATATAGATGAAAGATAAAATAGTTTTATGAGATTAGGGGTTGTGTGTTAGATTCTGTCTGGTTGTGTGTTAGATTCTGTCTGGTTGTGTGGAGTcctggacagagagaagagaatagCACATGTATAAGCAATAAGCAGCCATTTTGTTCCTCTAGGACTTCAAATATAATGTACATAAATGTAAAGTTTCATTGTGTAAATGATGTACACCATAGAAAGAGCAGAGCAGAAATTGTAACTGAGGTTATTATTATTAGAGTTAATATGCAAAATGTTCATATCTCATCTGTTTTAtatcatgtgaaataaatgttgATGTTCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1974933 lncRNA upstream 16976 28607554 ~ 28607802 (+) True G1723926
TU1974912 lncRNA upstream 32210 28592369 ~ 28592568 (+) True G1723905
TU1974845 lncRNA upstream 79847 28544612 ~ 28544931 (+) True G1723838
TU1974791 lncRNA upstream 103273 28521073 ~ 28521505 (+) True G1723791
TU1974790 lncRNA upstream 103728 28520761 ~ 28521050 (+) True G1723790
TU1975082 lncRNA downstream 36975 28824411 ~ 28827775 (+) False G1724040
TU1975083 lncRNA downstream 36975 28824411 ~ 28827775 (+) False G1724040
TU1975084 lncRNA downstream 36975 28824411 ~ 28825659 (+) False G1724040
TU1975087 lncRNA downstream 36975 28824411 ~ 28825659 (+) False G1724040
TU1975080 lncRNA downstream 37550 28824986 ~ 28827775 (+) False G1724040
XM_036957548.1 mRNA upstream 234182 28379822 ~ 28390596 (+) False LOC110500185
XM_021577393.2 mRNA upstream 234182 28381126 ~ 28390596 (+) False LOC110500185
XM_036957547.1 mRNA upstream 234182 28381126 ~ 28390596 (+) True LOC110500185
XM_036957546.1 mRNA upstream 248733 28351951 ~ 28376045 (+) True utp20
XM_021577391.2 mRNA upstream 281930 28341472 ~ 28342848 (+) False LOC110500183
XM_036957574.1 mRNA downstream 1496 28788932 ~ 28807707 (+) False aebp2
XM_036957572.1 mRNA downstream 1497 28788933 ~ 28807707 (+) False aebp2
XM_036957573.1 mRNA downstream 1497 28788933 ~ 28807707 (+) False aebp2
XM_036957575.1 mRNA downstream 1497 28788933 ~ 28807707 (+) True aebp2
XR_005038759.1 mRNA downstream 20384 28807820 ~ 28807949 (+) True LOC118943023
TU1974557 other upstream 281044 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 281569 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 281569 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 281931 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 425383 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 470824 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 471225 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 471225 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 1102850 29890286 ~ 29891957 (+) True G1725312

Expression Profile