RNA id: XM_036957572.1


Basic Information

Item Value
RNA id XM_036957572.1
length 3553
RNA type mRNA
GC content 0.48
exon number 8
gene id aebp2
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28788932 ~ 28807707 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGAAACACGTGGAACGGTCCACAATGTGGGGGGCTACGTCATGGTTATGCCTCCTCCCCGTTGAACACCCGTGGTGAAGCAGCGCATGCTATTGGGAGGAAGAACCAACTTTGTGGGGTAGCCTACAACACAAAATAGCTTACTACGCGCTGTGAACATGGCTGCAGTTACAACCAACGGTACCGAACAAGACTCCACACCGACAAACGAGCAAAATGGAACATTGGACAAAGGAGAAACCGGGAATAAGAAGCAGGGCCCCACAGACTCGAAACAGGAACCGGGTGACAACAAGGACGGACCAGAAATGGACGTGAGCAACCGAGACAGCAAAGAGGAGAAGCATTCAGTCGCACTAGAAGTCGCAAAAGAATCGGTTTTGTCCACGGAAAATGGTAACAAAGAAGAACCGGCCTGTGAACTGTCTGAACCGGTTAAAAGTCCCGTGGAGGGAATCCCTGCGAGCAGCACCGAAACCGGGGAGAGCATCGTGGAGCTGAAACCAGAACAAAGAGAGGAGAGCGTGTCCTCGCCTCCCAGCTCGGACAAGACCAAAAGCGAGGAATCCACGGAGAAAACCGACCGCGGTATCAAAAGACGGGCCAGTGTGGAGATATCATCCTCGGATGGAGAACCTCTCAGTCGAATGGATTCGGAAGACAGtattAGCAGTACTCTGATGGACATGGAGAGCACAGCGTCCAGCGGGCGCTCCACACCTGCCATGATGAATGGGCACGGCCCTGCCACCACCACCCCGTCGGTGGGTAAGAGCGTGGCATACACCTGCTGCTGGGACCAATGCCAGCTCCTCTTTACCACCAGCCCAGACCTGGCTGAGCACATCAGGGGCGTGCACGTGGACGGACAACGAGGAGGGGTATGCAGTgtgtttgtgtgtctgtggaaGGGCTGCAAGGTGTATAACACCCCGTCCACCAGTCAGAGCTGGCTTCAGAGACACATGGTCTCACACAGTGGAGACAAACCATTCAAGTGTGTGGTGGGGGGTTGCAATGCCACTTTTGCCTCCCAGGGGGGGCTGGCACGCCACGTACCCACCCACTTCAGCTCCCAAAACTCCAACAAGCTGGCCAATCAGGGCAAGATGAAGGAGGATTCACCTTCGAAAGCGGGGCTTAACAAGAGGCGGAAACTCAAGAATAAACGCAGGAGGTCTTTACtGTGTTCTGTCCCTCCAGCACGACCTCACGACTTCTTTGATGCCCAGACCATGGATGCTATCAGACACCGGGCCATCTGCCTCAACCTGGCTACACATATAGAGAGCCTGGGCAACGGACACAGTGTGGTGTTTCACAGCACGGTAATAGCGAGGAGGAAGGAAGATTCTGGGAAGGTTAAAGTCCTCCTCCACTGGACTCCTGAGGACATACTTCCTGATGTGTGGGTGAATGAGAGTGACCGGCCGCAGCAGAAGACCAAGGTGGTCCATCTCTCCCAGTTGCCCCAGGACACACACGTACTGCTGGACCCCAacatatacagGATGTTCTTCTAGAGACTAAGAACAATCAATCAAGAGACTTCGAAGGAGCCTGCTGATATCACCTCTCATAGGAAGtctctgtcttgtcttgtctggaCAGGAGTGAAAACCAGAGATTTCAGTACCTCTTATTTCCCCCTTTTTTTCTTGGTTCAATTTCTGCTCTTTTCACTTTCTTTTCAAATTCCTCCAAATGACAGACATTTAGTATTTGTTTTTAATGGTTTCTGAAAATACACAGTAGTGTGTGGACACCCCTACAAATTAgcagatttggctatttcagccacacccattgctgacagatgtattaaattgagcacacagcaatgcaatctccatagacaaacatttgcagtggaatggccttactgaagagctcagtgactttcaacatggcaccgtcataggatgccacctttccaacaagtcagttttctgccctgctagagctgtcatGGTCAGCTGTACGTGCTTTTATTGTGAACTGGAAATGTCTAGgatcaacaacggctcagccgtgaagtggtaggccacaaaagctcacagaatgggagtgctgaagcacatattgtgtaaaaatcatctgtcctcggtttcaGCACTCACTAcggagttccaaactgcatcttgacgcaacatcagcacaataactgtttgttgggagttTCATTAGTGGGTTTCCATgacccgagcagctgcacacaagcctaagatcaccatgcgccaagccaagcattggctggtgtaaagctcgccaccattggactctggcgcagtggaaacgcgttctctggagtgatgaatcacgcttcaccatctgtcagtccgaCGGCCAAAtctaggtttggcggatgccaggaggacgctacctgcccaaacgcatagtgccaactgtaaagtttggaggaaGAATACTTTTTTCATGGTTTAGGCTagggcccttagttccagtgaagggaaatcttaaccttACAGCATACGATATTCTAGACGAtatgtgcttctaactttgtggcaacagtttggggaaggccctttcctgtttcagcatgacaatgcccgcatgcacaaagcgaggtccatacagaaatggtttgtcgagatcagtgtgaaaTAACTTGACTTGCCTGCCcagtgccctgacctcaactcaatcgaacctttgggatgaattggaacgccgactgcgagccaggcctcatCGGCCAACATCCGTGcctgcccgacctcactaatgcgcttgtggctgaatggaaacaagtccccgcagcaatgtttcaacatctagtggaaagccttcccagaagactggagtctgttatagcagcaaagggggggaccaactccatagtaaTGCCCACgatattggaatgagatgttcgacgaacaggtgtccacatacttttggtaatgtaggcCAAATGTATTATATACTAGGTGCTAAACATTTGAGCATTTAGGTGGGTGCTTTTGTAAGTTTAAGGTAGTACAACTAGACTACGAGCTTAACAGCACAGTTACTTGATGTTGTAGAGAAACTTGTCTTTGTAAATACTCCTGGAGATTGGTAATATATTTTTATACCTGGAAATTGTACTGTAGAGGATTTATTATTTCTGCtccaatgtttttaaaatgttttaaactgTAATAATTGTACATAATGCAATAGGAAAATAGTTTTGACGGACGATATCAATTCCTTATTTCTTTAAAGGCTGTTTAAGTAGACCCGGTGTTTGTCTGACACTAGCTGGGTAACTTTTACCCTCGCAGCTTCTGATGGTCACGATGACGAGGGAGTTGTAAGGTGTATGTGTTTATCTTTGTGCTGCTGGCAATAGTCAACAACAGTATTAACCCCTCTCCAGTCTTCTGTCAGACTGGCTAGCTAACCCTCTGCATGTTAGTGTCCACAGGGATTAGAGACGATCGTGTTGAACTATACAGTAGGAACTGTTCTTCGCGGTCTGTCTATGGAGGTCCATTTATAACGTGGCATCACGGGTCTtttgaaataaaatgttttcaaTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1974933 lncRNA upstream 181131 28607554 ~ 28607802 (+) True G1723926
TU1974912 lncRNA upstream 196365 28592369 ~ 28592568 (+) True G1723905
TU1974845 lncRNA upstream 244002 28544612 ~ 28544931 (+) True G1723838
TU1974791 lncRNA upstream 267428 28521073 ~ 28521505 (+) True G1723791
TU1974790 lncRNA upstream 267883 28520761 ~ 28521050 (+) True G1723790
TU1975082 lncRNA downstream 16704 28824411 ~ 28827775 (+) False G1724040
TU1975083 lncRNA downstream 16704 28824411 ~ 28827775 (+) False G1724040
TU1975084 lncRNA downstream 16704 28824411 ~ 28825659 (+) False G1724040
TU1975087 lncRNA downstream 16704 28824411 ~ 28825659 (+) False G1724040
TU1975080 lncRNA downstream 17279 28824986 ~ 28827775 (+) False G1724040
XM_036957571.1 mRNA upstream 1497 28624778 ~ 28787436 (+) False LOC110500191
XR_005038759.1 mRNA downstream 113 28807820 ~ 28807949 (+) True LOC118943023
XM_036957576.1 mRNA downstream 56302 28864009 ~ 28940590 (+) False LOC110501052
XM_036957577.1 mRNA downstream 56304 28864011 ~ 28940590 (+) False LOC110501052
XR_005038568.1 mRNA downstream 133487 28941194 ~ 28943195 (+) False LOC118942915
XM_036957578.1 mRNA downstream 169675 28977382 ~ 29040907 (+) False LOC110501054
TU1974557 other upstream 445199 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 445724 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 445724 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 446086 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 405112 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 450553 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 450954 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 450954 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 1082579 29890286 ~ 29891957 (+) True G1725312

Expression Profile