RNA id: TU1975117


Basic Information

Item Value
RNA id TU1975117
length 372
lncRNA type sense_over
GC content 0.53
exon number 1
gene id LOC110501052
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28864009 ~ 28940590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGAGTAACATGTGCCTAAAGAAAacaaggtggagggagggagcggaAGCTGAGGAGGATGTGGGATTTATTGTTTTACTACTATATTGGATCAGGTTTCCATTTCAGAATCCCTCTCCCTGACGAGGTGCCCGCAACGCAATACGGGCCCACAGAACACTGACCCCACTGCCAGCCTCAAGACACAGCCGGCCATACAAGTGGTCCGCATCCACCTGACCGCCCTCACAGAACCAGGGTGTACAACGTGGACTGTACTGAATAGACAGTACAAACACTAGCTCCCGAGGACAATGAGATGAAAGGGCGGGAAAAAGCTGTGTCCGCTCTGTGTTGGTTctcaggagaggactggggactAGGGAGAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1975146 lncRNA upstream 22468 28914061 ~ 28914279 (+) True G1724099
TU1975144 lncRNA upstream 26761 28909774 ~ 28909986 (+) True G1724097
TU1975143 lncRNA upstream 26990 28909458 ~ 28909757 (+) True G1724096
TU1975133 lncRNA upstream 43005 28893526 ~ 28893742 (+) True G1724086
TU1975086 lncRNA upstream 108972 28827001 ~ 28827775 (+) True G1724040
TU1975116 lncRNA downstream 289 28937407 ~ 28937770 (+) False LOC110501052
TU1975118 lncRNA downstream 1327 28938445 ~ 28938856 (+) True LOC110501052
TU1975115 lncRNA downstream 4063 28941181 ~ 28943191 (+) True LOC118942915
TU1975162 lncRNA downstream 7870 28944988 ~ 28945273 (+) True G1724115
TU1975166 lncRNA downstream 15144 28952262 ~ 28952549 (+) True G1724119
XR_005038759.1 mRNA upstream 128798 28807820 ~ 28807949 (+) True LOC118943023
XM_036957574.1 mRNA upstream 129040 28788932 ~ 28807707 (+) False aebp2
XR_005038568.1 mRNA downstream 4076 28941194 ~ 28943195 (+) False LOC118942915
XM_036957578.1 mRNA downstream 40264 28977382 ~ 29040907 (+) False LOC110501054
XM_036957579.1 mRNA downstream 40264 28977382 ~ 29040907 (+) True LOC110501054
XM_021577402.2 mRNA downstream 143186 29080304 ~ 29168271 (+) True cog5
XM_021577407.2 mRNA downstream 236481 29173599 ~ 29183951 (+) True LOC110500199
TU1974557 other upstream 593013 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 593538 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 593538 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 593900 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 275701 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 321142 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 321543 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 321543 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 953168 29890286 ~ 29891957 (+) True G1725312

Expression Profile