RNA id: TU1975116


Basic Information

Item Value
RNA id TU1975116
length 364
lncRNA type sense_over
GC content 0.43
exon number 1
gene id LOC110501052
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28864009 ~ 28940590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctttcaatcTCTCCACTTTTGTGTCGGTCATTCAGGCTCTTTTTTCCCCCTCTCGCTCCTTCGCAGTTCCACAGGACCCAGGAACACTGACACACCCCACTgggcacactggttgaatcaatgttgtttccacttcgtttcaatgaaattacgttgaaccacaGTGAAATTGGTATTGAATTGACGTCTGCCCAATGGGACCCAACGCAGACCCCTCATCACAGTGTCCTTGTGCCCTTTGTCATTATTGCTTCAACCAACACAAGTGATTGTTCTTTCCTTTGTGTTATTGGTTTGGGGttttactttcttttttttcttttttttttttaacattggcCGTAAGATATTCGCTCTCAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1975117 lncRNA upstream 289 28936747 ~ 28937118 (+) False LOC110501052
TU1975146 lncRNA upstream 23128 28914061 ~ 28914279 (+) True G1724099
TU1975144 lncRNA upstream 27421 28909774 ~ 28909986 (+) True G1724097
TU1975143 lncRNA upstream 27650 28909458 ~ 28909757 (+) True G1724096
TU1975133 lncRNA upstream 43665 28893526 ~ 28893742 (+) True G1724086
TU1975118 lncRNA downstream 675 28938445 ~ 28938856 (+) True LOC110501052
TU1975115 lncRNA downstream 3411 28941181 ~ 28943191 (+) True LOC118942915
TU1975162 lncRNA downstream 7218 28944988 ~ 28945273 (+) True G1724115
TU1975166 lncRNA downstream 14492 28952262 ~ 28952549 (+) True G1724119
TU1975245 lncRNA downstream 148236 29086006 ~ 29086320 (+) True G1724180
XR_005038759.1 mRNA upstream 129458 28807820 ~ 28807949 (+) True LOC118943023
XM_036957574.1 mRNA upstream 129700 28788932 ~ 28807707 (+) False aebp2
XR_005038568.1 mRNA downstream 3424 28941194 ~ 28943195 (+) False LOC118942915
XM_036957578.1 mRNA downstream 39612 28977382 ~ 29040907 (+) False LOC110501054
XM_036957579.1 mRNA downstream 39612 28977382 ~ 29040907 (+) True LOC110501054
XM_021577402.2 mRNA downstream 142534 29080304 ~ 29168271 (+) True cog5
XM_021577407.2 mRNA downstream 235829 29173599 ~ 29183951 (+) True LOC110500199
TU1974557 other upstream 593673 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 594198 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 594198 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 594560 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 275049 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 320490 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 320891 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 320891 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 952516 29890286 ~ 29891957 (+) True G1725312

Expression Profile