RNA id: XM_036957579.1


Basic Information

Item Value
RNA id XM_036957579.1
length 2585
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110501054
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28977382 ~ 29040907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTGCCGCGCACTCTGCGCTGTCCAAACTCTCTGCCACCGGGAATATTACGCGCGTTTTTGTCATAGGTTGTTGTATTACCACATTGGGAAATTTAGGGCGATTGTTTCATGGTCGACTTGGGTTGCATGCATCAATGCCAAGAAATTTCATTAGGGGAACTTTGCCCAAGGAAAACGAGAGCCATCTGTGTAGGATGGAGCCGGTGGCcaaggagagagggacaacagagaATGGAGGCAGCTCCTCTACGAGGGAGCAACGCTCCTCCTGCTCCAGCCTCAAGATGTTCCTTGTGGCCCTATCGTTTGCCTACTTTGCCAAGGCCTTGTCTGGCAGCTACATGAAGAGCACAATAACCCAGCTGGAGAGGCGCTTTGACATCCCCAGTTACCTAACAGGCGTCATCGACGGGAGCTTTGAGATAGGTAACCTGTTGGTGATAGCATTCGTGAGTTACTTTGGTGCAAAGCTGCATCGGCCCAAGATCATAGCCATGGGCTGTGTACTGATGGCAGTGGGAACATTCATCATCGCTCTGCCACACTTCCTCATCGGACGCTATAAGTTCGAAACGTCAATCCGATCGTCAGTGAATTCAACCAATAACCTCTCTCCATGTCCAGCGCGCCTGTTGTCACCCTCCTCGCAAGCTTCGGGTGACCCGCTTTCTGAGGCACCAAGCACAGGGACAgGTTGTGAAGGAGAGTCCAACCTCTCCATGTGGATCTATGTGTTCCTGGGGAACGTCTTACGAGGGATCGGGGAGACTCCAGTGCAGCCCCTTGGGATCTCGTATATAGATGATTTCGCCAGGGAGGAAAATGCTGCATTTTACATTGGCTGCGTTCAGACCATAGCAGTCATTGGTCCTGTGTTTGGCTATTTACTGGGATCCCTGTGTGCCAAAATATATGTGGACATTGGATTTGTCAACATGGAGAGTATCACCATAAGCCCCGGTGATGCTCGCTGGGTGGGGGCCTGGTGGTTAGGTTACCTTATTGCTGGGGTAATCACCCTGCTTTCAGCCATCCCCTTTTGGTTCCTGCCCCGTTCCCTGCCCATCCCGTCAGACCGAGGCCCAGCCCAGTGCACCCCGGAGCGTACTAGCTTCATCAAAGACCCCCCTCTACTGGAGCATAAGTACCAAGCCGACGAGCCAGCTGGCTTTCTGGAGATGGCCAAAGATTTCATACCAACGTTGAAAACCCTCCTGGGGAACCCAGTGTACTTCATCTACCTGTGTGTGACCATCGTTCAGCTGAACTCTCTCATCGGCATGGTAACCTACAAGCCCAAGTACATAGAGCAACATTACGGACAGTCCGCATCAAAAGCCAATTTCCTGATGGGTACAATCAACATCCCTGCCGTGGCGTTGGGAATTTTCACTGGCGGCCTGCTCATGAAGAGGCTGAAGCTGAGCATCATGGGAGCAGCCAAGTTTGCGTTCGGCACCTCTCTGATAGGCTACTTCCTATCCCTCTTCTTCTTCGTCATGAGCTGCGAGAACGTCAAAGTGGCTGGGATCACGCTGCCCTACAAcaggGTGGGTGGTGTATCGTATGAGGAGCGCTCAGTATTCTCAGCCTGTAACTCCGACTGTGTTTGTTCAGGCAGAGACTGGGACCCTGTCTGTGGAGAAAACGGCATCACGTACGTCTctccctgcctggctggctgccaGACCTCCACAGGATCAGGGAAGAACACGGTGTTCTCTAACTGTAGCTGTGTGGTGGCAGCAGGGCTGAGCAGTGGTAACCTGACAGCCAGTGTAGGCCACTGTCCTCACAGAGACGACTGTGACCGTGTCTTCCCTTACTTCCTGGCTCTTTCTGTCATCACTTCCTTTATCATCTCCCTGGGTGGCACGCCAGGCTACATGGTCCTCATCagGTGTATCAAGCCTCAACTGAAGTCCTTAGCTCTGGGGTTCCATACTCTGTCCACACGTACACTTGCGGGCATCCCAGCGCCCATCTACTTTGGGGCGGTCATCGACACCACGTGTCTGAAGTGGGGCCAGAAGAGATGCGGAGGGAGAGGAGCCTGTCGGATAtacaacactacagcatacaggatAGCTTACCTGGGTCTGACTATGGGCCTGAGGACAGTTTCCTTTCTGCTGTGTATACTGGGATTCGTGCTGCTCAAACAACACCTGCGGAGAGAGGAATGCAGCGCCCACCAAGTGGCCAATGGCGGAGCAGAACTGGAGGCACTCAGGAAAGAGGAGGTCCTAGCCTCCAACTCGGACCAATCGCTACAGACTTCCACAACAgactacaacaacacagagagagagacacggctGTGACAGTTTGAGACAATCTCCCCTGATCCCTCAcgtctcagacacacacaaacactagatTTGCAGGAACCAACAACGGGCTGTGCCTGACCATCTCATCTCATAGAACATAAATTATGTATTTGTACTGGACCTGTCTAGGTtatgtatatttaaaaatatacagttgaagtcggaagtttacatacaccttagccaaatacatttaaactcagtttttctacaattcctgacatttaatcctagtaaagattcactgtct

Function

GO: NA

KEGG:

id description
K08747 SLCO1C; solute carrier organic anion transporter family, member 1C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1975166 lncRNA upstream 24833 28952262 ~ 28952549 (+) True G1724119
TU1975162 lncRNA upstream 32109 28944988 ~ 28945273 (+) True G1724115
TU1975115 lncRNA upstream 34191 28941181 ~ 28943191 (+) True LOC118942915
TU1975118 lncRNA upstream 38526 28938445 ~ 28938856 (+) True LOC110501052
TU1975116 lncRNA upstream 39612 28937407 ~ 28937770 (+) False LOC110501052
TU1975245 lncRNA downstream 45099 29086006 ~ 29086320 (+) True G1724180
TU1975288 lncRNA downstream 145805 29186712 ~ 29186948 (+) True G1724222
TU1975293 lncRNA downstream 158146 29199053 ~ 29199443 (+) True G1724227
TU1975295 lncRNA downstream 159664 29200571 ~ 29200813 (+) True G1724229
TU1975297 lncRNA downstream 165955 29206862 ~ 29207187 (+) True G1724231
XR_005038568.1 mRNA upstream 34187 28941194 ~ 28943195 (+) False LOC118942915
XM_036957576.1 mRNA upstream 36792 28864009 ~ 28940590 (+) False LOC110501052
XM_036957577.1 mRNA upstream 36792 28864011 ~ 28940590 (+) False LOC110501052
XR_005038759.1 mRNA upstream 169433 28807820 ~ 28807949 (+) True LOC118943023
XM_036957575.1 mRNA upstream 169675 28788933 ~ 28807707 (+) True aebp2
XM_021577402.2 mRNA downstream 39397 29080304 ~ 29168271 (+) True cog5
XM_021577407.2 mRNA downstream 132692 29173599 ~ 29183951 (+) True LOC110500199
XM_021577409.2 mRNA downstream 148128 29189035 ~ 29194796 (+) True LOC110500200
LOC110501056 mRNA downstream 207010 29247917 ~ 29251909 (+) False LOC110501056
XR_005038433.1 mRNA downstream 583375 29624282 ~ 29630010 (+) True LOC118942782
TU1974557 other upstream 633648 28341501 ~ 28343734 (+) True LOC110500183
TU1974553 other upstream 634173 28341501 ~ 28343209 (+) False LOC110500183
TU1974555 other upstream 634173 28341501 ~ 28343209 (+) False LOC110500183
TU1974552 other upstream 634535 28341501 ~ 28342847 (+) False LOC110500183
TU1975302 other downstream 171912 29212819 ~ 29214283 (+) True G1724234
TU1975334 other downstream 217353 29258260 ~ 29259929 (+) False G1724262
TU1975332 other downstream 217754 29258661 ~ 29259865 (+) False G1724262
TU1975333 other downstream 217754 29258661 ~ 29259929 (+) True G1724262
TU1976442 other downstream 849379 29890286 ~ 29891957 (+) True G1725312

Expression Profile