RNA id: TCONS_00004798


Basic Information

Item Value
RNA id TCONS_00004798
length 1831
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_002580
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7738540 ~ 7756876 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGAGCAATAGGAGGTCGCACTGAGATCTCACCTTTCCGTTATTAACTGGAACGTCGGCAAGTAGAAGAACTGGACAAGCCAATTTAGCTTAAAATGAGTATGAGTTTAATTGACACCTTCATTTACGCATTTGCGCACGTGTGTTTATTAAGTTGCATAGCACAAACTGGTCAAACTCAGCGCCAGGGCAACACTGGAGCAGCAGCTCTCAGACAAACCATACAATGGCAGCACAATGGCAAACTCTTTAGTATATTAAGTCAAGGTTCGGAATATCAGCCGCCGTTAAAACGAGACGGAAACAAAGAGCAGGCGCAAGCCAGACCGGTAGCCATCGTCCGCAATGATGATGCAGCAACGAGAACCGACAGCTCAGCGCCTTCACGAGCCTCCCAGAGCCGCGGGTCTGTGCGCGTGCCGTCAGGTACCGGTGCGCGCGGAGGCGCGTCGCGCTGGCTGTCAGGTGACGGAGCGCGCACCAGAGGAGTTCACGGGCGCAGAAACCACACAGACCCGCTGCGGTCAATCAACGGCACCGACAGACCCGCGGGCGATGATGAAGTGATGGTTGGTGATGATCCTTACAACCCCTACAAGTCTACTGACCCGGACAAcccatattataattattacgaCACGTATGAGAGACCTCGTCCCGCACAACGCCCGGGATATGGCACTGGATACTTCCAAAATgGTTTGCCTGATCTTGTGGGAGACCCATACTACATCCAAGCATCCACCTACGTGCAGCGAGTCCCGATGTACAACCTCAGATGTGCCGCTGAGGAAAACTGCTTGGCAAGCTCTGCATACAGGTCCAGCGTGAGAGACTACGACATGCGTATGTTGCTGAGGTTTCCACAGCGAGTCAAGAACCAAGGGACCTCAGACTTTCTTCCCAGTAGGCCTCGCTACACCTGGGAATGGCACAGCTGCCATCAGCACTACCACAGCATGGACGAGTTCAGTCATTATGACCTGCTGGACGCAACCACTCACAGAAGAGTAGCAGAGGGACACAAGGCCAGTTTCTGCCTGGAGGACACGTCCTGTGACTATGGTTACTACCGACGATACGCCTGCACCTCCCACACTCAGGGTTTGAGTCCAGGTTGTTATGACACGTACAATGCTGACATTGACTGCCAATGGATAGATATTACTGATGTGAAACCAGGAAACTACATCCTCAAAGTTAGTGTTAATCCCAGTTACCAGGTGCCGGAGTCGGACTACAGTAACAATGTTGTGCGATGTGATGTACGTTACACCGGAAACTACGCGTATGTTTCTGGATGCCATATATCGCAATATTAAGTATGTAGTGAAGGATCCAATAGAAAGATCAACAGACAAGAGGTGATTTAAGATGAAAAAATAGCAAAAACCGAGACAAAGTGAACAGATGACTGGACTGTTTGAGAGAGCCAATGATCAGCAGGGCATTCTAATGTTGACTATACCACACAATATGAAATCCTGAAGCCTAAATACAGTCTGTAAATTGcattattcatgtttttgtttttgctatggAAGTTCTAAGCAAAATGTAGTTATTATTGCCAGTTTGCAGGGATACCACACATTCCAAATCATTCGGCATCATTCTCTGtgactaaaaaaaattatgttaacaaAATGAAACCTTCAGATGTTGATTCACACTATAGggatttttccttaaaacatgctTTAGTGTGCTAGAGCGTTGCTTTAGTTGTGTATTCTAAGTAGATATTTATATACAGATGCTCATATTACTGCAACACATTTTATATATGAAATGAAAATTACTTGAATAAATAACTTCACACTCAGCCTTA

Function

GO:

id name namespace
GO:0007517 muscle organ development biological_process
GO:0051216 cartilage development biological_process
GO:0030199 collagen fibril organization biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0022008 neurogenesis biological_process
GO:0018057 peptidyl-lysine oxidation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function
GO:0004720 protein-lysine 6-oxidase activity molecular_function

KEGG:

id description
ko00590 Arachidonic acid metabolism

ZFIN:

id description
ZDB-GENE-040426-2398 Predicted to enable protein-lysine 6-oxidase activity. Acts upstream of or within cartilage development; muscle organ development; and neurogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; head; muscle; notochord; and pectoral fin. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome; Menkes disease; hypertension; and thoracic aortic aneurysm. Orthologous to human LOX (lysyl oxidase).

Ensembl:

ensembl_id ENSDART00000016317

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004792 lncRNA downstream 102217 7624088 ~ 7636323 (-) True XLOC_002576
TCONS_00005996 lncRNA downstream 484642 7238244 ~ 7253898 (-) True XLOC_002572
TCONS_00005995 lncRNA downstream 677003 7050325 ~ 7061537 (-) True XLOC_002571
TCONS_00004778 lncRNA downstream 907258 6786508 ~ 6831282 (-) True XLOC_002568
TCONS_00005994 lncRNA downstream 1043208 6693514 ~ 6695332 (-) False XLOC_002565
TCONS_00004803 lncRNA upstream 22762 7779638 ~ 7782022 (-) True XLOC_002582
TCONS_00004805 lncRNA upstream 53788 7810664 ~ 7811388 (-) False XLOC_002583
TCONS_00004806 lncRNA upstream 53788 7810664 ~ 7811754 (-) False XLOC_002583
TCONS_00004808 lncRNA upstream 57768 7814644 ~ 7820475 (-) False XLOC_002583
TCONS_00004807 lncRNA upstream 57768 7814644 ~ 7821542 (-) True XLOC_002583
TCONS_00004796 mRNA downstream 3601 7727281 ~ 7734939 (-) True XLOC_002579
TCONS_00004795 mRNA downstream 36511 7673446 ~ 7702029 (-) True XLOC_002578
TCONS_00004793 mRNA downstream 67321 7653184 ~ 7671219 (-) False XLOC_002577
TCONS_00004794 mRNA downstream 71730 7653303 ~ 7666810 (-) True XLOC_002577
TCONS_00004791 mRNA downstream 102200 7623698 ~ 7636340 (-) False XLOC_002576
TCONS_00004800 mRNA upstream 12938 7769814 ~ 7772434 (-) True XLOC_002581
TCONS_00004801 mRNA upstream 21994 7778870 ~ 7785930 (-) False XLOC_002582
TCONS_00004802 mRNA upstream 21994 7778870 ~ 7785945 (-) False XLOC_002582
TCONS_00004804 mRNA upstream 53579 7810455 ~ 7821686 (-) False XLOC_002583
TCONS_00004809 mRNA upstream 74563 7831439 ~ 7858553 (-) False XLOC_002584
TCONS_00004790 other downstream 226417 7512008 ~ 7512123 (-) True XLOC_002575
TCONS_00004786 other downstream 386430 7290947 ~ 7352110 (-) True XLOC_002573
TCONS_00004780 other downstream 729050 7009374 ~ 7009490 (-) True XLOC_002570
TCONS_00004776 other downstream 921774 6786333 ~ 6816766 (-) False XLOC_002568
TCONS_00004811 other upstream 113751 7870627 ~ 7892684 (-) False XLOC_002585
TCONS_00004813 other upstream 124453 7881329 ~ 7891866 (-) True XLOC_002585
TCONS_00004819 other upstream 172895 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004848 other upstream 919014 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004855 other upstream 1259845 9016721 ~ 9016837 (-) True XLOC_002609

Expression Profile

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