RNA id: XM_021577419.2


Basic Information

Item Value
RNA id XM_021577419.2
length 6188
RNA type mRNA
GC content 0.53
exon number 19
gene id LOC110500208
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29980884 ~ 29993056 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACATGTAGACTTGCATGGGACTCGGCTTCACACATCACGGGGAGGGGTGAATGGAATAGCAGACAGAAAGTTTTAGTACCACGGACTCAACATGAACTAAGGAGAAACTGGGACCATtgtacaaatatttacaaatgcCTAGTGACCCACCGTGTCATATTTCTGCTGGCGTGAGTGTGTTTAGGCCTACCGAGCGATAACTCGTGTTATGGAACAGCAAGTGAGCGATGAAGAAGAATCTCAACCTGTAGTCCTTAGAGAAGAGAAccggaggaggagaagaaagatgAAAGCCTTCACCTCCACCTTCTCCGTGGCCATGGATCAGATAGCCATCGAGTTCGTCCTCCCCACCACCACTAAGAGTAGCCGCAGCCCGGACACCTTGCTCCTGGAGGTGGCTGGGAACTGGACGGTGGAGCAGGTGAAAGCCCAGGTGTGGCTGAGGGTAGTAGCCACCAACCTGTGCCCCGAGTTCTATCAGAAGTACTCTCCTGACCACTGCATCCTGCTCTACCAGAAGAAGGGCAACTGGTGTGAGATCTACGATAAGCACCAGGTGTTTCAGACGCTGGACTGCATCCGCTACTGGAAAGCTCTGAAGAAAGATGTGGGGAAGATCCACCTGACGTGCCGGCCTCAGCCCTCTGAGGAATCTACACAGTACCAGAGGTACCTCAACTACCTGATTGGCTACGACGTCACCGACGTCAGCAACGTGCACGATGACGAGCTGGAGTTCACCAGGAGGAAGCTCCTCACACCCCGCAAGATAGAGCTGGCCGACCGGGACCCCAAACTCTACTCAATGGACCCTTGGATCACATCCAAGCACCTCCCAGAGTACCTGCTCACCAAGGTGACCAACAGCCACATCCTGCTGGTCATTCACAGGAACAAGGCCAGCCAGACCATCAAGGTGTCCATCGACGACACGCCCGTCCAGGTGCTCCAGACCTTCTTTACCAAGATCTCCAATAAGAGGGCTCTGCTGGGAGTTCCTGAGGATGTGTGTGAGGCAGACTATGTCCTGAGGGTGTGTGGCAGGGAAGAGTATATCTATGGGAACCACCCGGTCAGGGACTTCCACTGGGTCCGACAGTGTCTGAAGAACGGGGAGGAGATCCATCTGGTCCTGGAGTCGGCTCCTAATCCAGGTCAAGACCTGGTCCAGAAAGAGGACTGGGCACAGGTGGATGACTGTACTGGAGTGGCAGGCACCCATGAGCAGCTGACGATCGACGAGAAAGACCACGAGCGGGTCTTCACAATCTCTCTGTGGGACTGTCACAGGAAGTTCAGGGTTAAAGTCCTGGGCATAGACATCCCGGCCCTGCCGAGGAACCCTGAGCTGATTGTGTATGTGGAGGCCAGTATCTTCCATGGCCAGCAGCTCCTGGCTCAGGAGAGGACCTCCTCCAAGGCTTTCACTGAGGAGGTGCTGTGGAACACCTGGCTGGAGTTTAATATACGCATCAGAGACCTGCCCAAGGGGGCTCGCCTCAGCCTACAGGTGTCCTGTGGGAAGGCCCAGACCCAGATCTCTAAGGGCACCTCCTCCTACCAGGACAACGGAGGATCCCCAGTTGGAGGTGGCAGCGGCAGCCATGATTGTAATAAGACTAAGAGTCGTCTGCTGTACTACGTCAACCTGCTGCTGGTGGACCACCGCTCGCTGCTGCGCCAGGGAGAGTTCATCCTCCACATGTGGAAGATGCCTGAGAAGACCGAGGACAACAGCAGCGTCAATGCAGACAAGCTGACCTCAGCCACCAACCCAGACAAGGCCTCCTCCATGGCCGTAGCCATCCTGCTGGACAAGTACTGCTACCCAGTGGCCCTGCCCAAGAGCAGGGAGGGCAAGGAGGCTGGGGGGGAGGGTCGGGAggctgagggaggggagagggggcaaAGGGAGATGCCTAACCACCTGAGGAAGCAGTTTGAGGCAATTGTTGAGACCGATCCACTGCACCCTCTCAGccaagaagacaaagagctgctGTGGCACTTCAGAGAGGAGTGTATGCGTCACCCCAGGGCATACCCcaagctgctgggctctgtgcgGTGGGGTAGACAGGAGGCTGTCCTGGCCACCCATAGGCTGTTGGAGAGGAGCTCTGTATGGGACCGTAGTGTGCTGGATGTGGGCCTGGCCATGCAGCTGTTAGACTGCCACTACTCTGACGCTCACGTCCGCTCCATGGCCGTACGCAAGCTAGAGACCCTGGGGGACGACGACGTCCTCAGGTACCTGCTGCAGCTGGTCCAGGCTGTGAAGTTTGAGCCGTACCATGACAGTGCCCTGGCCAGGTTCCTGTTGAAGAGAGCTCTCAGGAGTAAGAGGATAGGTCATTTCCTTTTCTGGTTCCTGAGGAGTGAGATCGCCCAGTCCATGCACTACCAGCAGAGGTACGCTGTGCTGCTGGAAGCCTACCTCCGAGGCTGTGGAGAGGACATGCTGCAGGACTTCAGACGCCAGGTGGAGATGACAGAAGCCCTGCAGAAAGTCACCAGGGAGATCAAGGCCATGTCTGCTGAGAAATATGATGTTTCTGCACAAGTTGTGTTCCAGCTGCGTCAGAAGCTGGAGAACCTGCAGACGTCTGGGCTGCCAGAGAGCTTCAGAGTGCCCTATGACCCGGGTCTACGGGCTGGTGCTCTGGTGATAGAGCAGTGTAAGGTGATGGCCTCTAAGAAGAGACCGCTGTGGCTGCAATTTAAGAGGGCTGACCCCACCACACTGTCCAGTGACACCATCGGGGTCATCTTTAAGGACGGGGATGACCTCAGGCAGGACATGCTCATTCTACAGATTCTGCTGATCATGGAGTCCATATGGGAGGAAGAGTCTTTGGACTTGTCCTTACTGCCCTACGGCTGTATCTCTACTGGGAATAAAATAGggatGATTGAGATAGTGAAAGATGCCACCACTATTGCCAACATCCAGCAGAGCGTTGTGGGAAGCACAGGAGCGTTCAAGGACGAGATCCTCAACCAATGGCTGCGGGACAAGTGTGTGAGCGAGGAAAAGtTCCAGCAGGCGGTGGAGAGGTTTGTGTTCTCCTGTGGAGGGTACTGTGTGGCCACCTACGTGCTGggggtaggagacagacacaaCGACAACATCATGATCACTGAATCTGGTAACCTGTTCCACATAGACTTTGGCCACATACTGGGGAACTATAAGAGTTTCCTGGGTATCAGTAAGGAGAGGGTTCCCTTCGTCCTCACCCCTGACTTCCTCTATGTCATGGGCACATCAGGGAAGAAGAGCAGCCCACATTTCCAGAAGTTCCAGGATGTGTGTGTGCGGGCCTACCTGGCTCTGAGGCATCACACCAACCTGCTCGTCATCCTGTTCTCCATGATGCTGATGACGGGCATGCCTCAGCTCACCAGCAAAGAAGACATCGAGTACATCCGCGAAGCGCTGACTGTGGGCCGGCCGGAGGAGGAGGCACAACGCCACCTGCTGGACCAAATAGAGATCTGCAGGGACAAGGGCTGGACCGTGCAGTTCAACTGGTTCCTACACCTGGTGCTGGGCATCAAGCAGGGGGTGGATAAACGCTCAGCCTAGGGTGCTCCCCTTATGGTGTCAATGGCTTAGTGGGCTGGCAACACCAGAGggatgggttcaaatcccacatGGGCCACATATGTGATAATTGTAAGCCACTTTAGGTAAGATTACTATGTTGATTGAACGCCCaaataaggagagagggagatatagtcAGAGACCAAAGTCTGGATCTAAAAGTTTGTCAACCCTTCCTCAATGATGTAACCAGTTGTTCCGATGCATTGCCCATTGACTGTACCATGGACTGTATACAGTAACAGTCTTATTTTTGCACTTTCAAGATCAAAGCCTGATCTTACCATATGTTTATGAGTTATACATAAATATTGACTCCTGTTCCTCTGCTAATGCACTGCATCTGATTGTATCATCTGTTAATATAACATCCGACTTGCATGACTGATGGTGGCAATACCATAATAAACCTAATCATAGAGAAATATAGTTTTATATTATGTCCCATCGCTAGAGGTCGACATGCAAATGTTAAACTGAGTGACTCACCAACCTCGTCAGAGGAAGAGGTCTCTAGGAAACCAAAGGAAGCTTTTCCACACCCGGGTAGCCTCTCTCCATCTCAGGTCTTGGGGATGTGGATGCGGTTGCAGCTTCAGTGTCTGCTGCTGGACTCCGTACGGAGTGTCCTGGAAGCAGTGATCCGGAGGAGCTTTGGTCCTGATGGAGTACAGGTGCTGTTCACACGGGACAAACGCTGTTGACACGCCACGGAAAACGCATCCTCACAGCCGTGCAGgatggtGGTGGAGGGTGTGAGGAGACACAGCTCGGTGACAGGAGACGGCTCCCAGACCTTCGTCCTGCTGCTCGCCTCATTGCTACGGGGGATACAGAAACACACCCGAAAATCCTCCCGGGAAGGTGCCAAGCGTTTGGCTGAAGCTCTGCTGGCCTTCGGCTTGGACGAGCTCAGTGATGTTATCACTGTTGGAGTGGCTCCACCTGGCTCCTCccgttcagacacacacaccccaggaCAGACAGATACACCCACTCTGTGCCACCTACTCAGTGCTTTCCTTCACACCCGGATCAGCCCTACTCATGTGGAAATCATCAGCCAACTGAACTGTGAGCTGCTCTCCCATTGGAGTTGCCATGGCAACTTCGTAAATGAACACTTCCCTGCTCTGCACACAACAGTATCAGGCTTCCTATTGGCTGTTCCAGTCTGCTGGAGGGCCAGGTCATACATGCAGATTTATCTACACCCTTCCCATTCTGCGACCATGGACCAATCAGGACCCTTGCAGTGACGGAACGCCTGGAACCCAGCCTACAGATTGGTGGAACTGTACTGGAGCTGGGTGGGGCTAATATAGGgatagaaagtgtgtgtgtgagatcaggGCGGGGgttagacagtgtgtgtgtcaccctaCAGCATCTAGGAgtgtctctgctcctctcatcAGTCAGACAGTCGGAGGCCTTCCTGGCTGCAGTGGGgaggtacggtgtgtgtgtgttagagtgtgtgtgaaGACAACCTTACCTTGTTCTCTGTGCTCAGTGGAGCCCAGCCTGTCTCAGACTGGGCCGTGATTGGACAGGAACATGTTGCTACGGTGACCTTCTGCCGGCCGCTGGTGCTGGGAGCTCACAGgttcGTCAATGTGGGGTTTCCTAAGGCAGAGGACAGGGGCAGACCCCACAGGGCCTGGCGGAACAGAGTGTATGTGCTGTACGAGATGCTCTACACATGCTGCATACTACTACCTGGGGGCCCAAACACAGGACTAGAGCTACAGAAAGAaccgcttacacacacacagacacacacacaaacacacacacagacgtgatGGAGCCTTGTTGTGTAATTTCCGTGGGCAGGACTTTTGACTTCCTGTTACACCACACCCTCCGTcaaacacagacacgcacactccgtcaaacacagacacgcacactccgtcaaacacagacacgcacactccgtcaaacacagacacgcacactccgtcaaacacagacacgcacactccgttaaacacagacatgcacactccGTCACACTTGGACACTCCTGCCGCCTCGGGGATGTTAGCAGAGGCCCTACTGAATGTGCCCAGACAGATCTACTCCCACAATCCTCGGCGCTACCTTGAGGCTCTCGCACACACACTCAGCTGCATACGTAACCATGGTAACTCTCAGGACCCGCTGGAGACAGTGCTGTTCTGGTAGTGGATGGTTCTAATATGGTCCAGGCTGACACTAGGTCAGGGTCTATGTCTGGGTCAGGGGTAAAGGAGGTGACAGTTTGGTCAAGCTCTGGCTCTAGTTCAGGTGTGGAGTCCTTTATGTATCATCTGATCCTGGCTGTACAGTGTCTCAGGAGTCTAGTGTCTGTGGACACTGTACTACACGCTAATACCTCACACACCtgtcagagagaagaggagtaggGTGACGACTGAGAACTCATACTTGATTTTATTTCATTGTTCATCCAAAAGTATTGTATTCAATTCTTGAAAAAGTAATCTCCTTGTGTAGTATGTCTTTGCATATGCATTTCTATGTTAATAAATCCGATTGGATTAAatggttatattatgttgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1976498 lncRNA upstream 21593 29959083 ~ 29959291 (+) True G1725360
TU1976494 lncRNA upstream 25002 29955519 ~ 29955882 (+) True G1725356
TU1976483 lncRNA upstream 28325 29949562 ~ 29952559 (+) True G1725345
TU1976479 lncRNA upstream 46031 29934629 ~ 29934853 (+) True G1725341
TU1976478 lncRNA upstream 46522 29933931 ~ 29934362 (+) True G1725340
TU1976534 lncRNA downstream 80400 30073456 ~ 30075203 (+) True cin
TU1976584 lncRNA downstream 131617 30124673 ~ 30124884 (+) True G1725432
TU1976588 lncRNA downstream 135808 30128864 ~ 30129130 (+) True G1725436
TU1976590 lncRNA downstream 137697 30130753 ~ 30131062 (+) True G1725438
TU1976595 lncRNA downstream 150730 30143786 ~ 30181651 (+) True G1725440
XR_005038433.1 mRNA upstream 350874 29624282 ~ 29630010 (+) True LOC118942782
LOC110501056 mRNA upstream 728975 29247917 ~ 29251909 (+) False LOC110501056
XM_021577409.2 mRNA upstream 786088 29189035 ~ 29194796 (+) True LOC110500200
XM_021577407.2 mRNA upstream 796933 29173599 ~ 29183951 (+) True LOC110500199
XM_021577402.2 mRNA upstream 812613 29080304 ~ 29168271 (+) True cog5
XM_021577425.2 mRNA downstream 389 29993445 ~ 30002054 (+) True LOC110500209
XM_036957593.1 mRNA downstream 9348 30002404 ~ 30009586 (+) False LOC110500210
XM_036957594.1 mRNA downstream 9348 30002404 ~ 30009586 (+) True LOC110500210
NM_001160580.1 mRNA downstream 80391 30073447 ~ 30075180 (+) False cin
XM_036957596.1 mRNA downstream 106314 30099370 ~ 30113179 (+) True LOC110501059
TU1976442 other upstream 88927 29890286 ~ 29891957 (+) True G1725312
TU1975334 other upstream 720955 29258260 ~ 29259929 (+) False G1724262
TU1975333 other upstream 720955 29258661 ~ 29259929 (+) True G1724262
TU1975332 other upstream 721019 29258661 ~ 29259865 (+) False G1724262
TU1975302 other upstream 766601 29212819 ~ 29214283 (+) True G1724234
TU1977415 other downstream 588946 30582002 ~ 30590636 (+) True G1726209
TU1977430 other downstream 612244 30605300 ~ 30611361 (+) False G1726222
TU1977431 other downstream 612244 30605300 ~ 30611361 (+) True G1726222
TU1977723 other downstream 888787 30881843 ~ 30883613 (+) True LOC110500226
TU1978141 other downstream 1147541 31140597 ~ 31141090 (+) True G1726863

Expression Profile